mRNA_H-paniculata_contig48872.12029.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48872.12029.1
Unique NamemRNA_H-paniculata_contig48872.12029.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig48872.12029.1 vs. uniprot
Match: UPI0009054628 (uncharacterized protein LOC109205763 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009054628)

HSP 1 Score: 55.1 bits (131), Expect = 7.420e-7
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 VDFLEVFVPTVAASSVKTVIAVAVENNWGMWQLDVKQALIQANLDFEVFIR 153
            VDF E F P V  S+VKT+IAVAVE +W ++QLDV  A +  +LD EVF++
Sbjct:  783 VDFHETFSPVVKMSTVKTLIAVAVEQHWPLFQLDVNNAFLHGDLDEEVFMK 833          
BLAST of mRNA_H-paniculata_contig48872.12029.1 vs. uniprot
Match: A0A445FKH7_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FKH7_GLYSO)

HSP 1 Score: 52.0 bits (123), Expect = 9.190e-6
Identity = 29/78 (37.18%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    1 VDFLEVFVPTVAASSVKTVIAVAVENNWGMWQLDVKQALIQANLDFEVFIRELIARKFLRIEYKKGEDQPADILTKPL 234
            V++ EVF P     +++ ++A+A +NNW ++QLDVK A +   L+ E+F+++      LR E KKGE+     L K L
Sbjct:  820 VNYTEVFAPVARLDTIRLILALAAQNNWDVFQLDVKSAFLHGELNEEIFVQQP-----LRYE-KKGEEGKVYKLRKAL 891          
BLAST of mRNA_H-paniculata_contig48872.12029.1 vs. uniprot
Match: A0A5B6WZF5_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6WZF5_9ROSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.180e-5
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    1 VDFLEVFVPTVAASSVKTVIAVAVENNWGMWQLDVKQALIQANLDFEVFIRE 156
            VD+ EVF P     ++K VIA+A +N+W ++QLDVK A +  NL  EVF+ +
Sbjct:   45 VDYKEVFAPVARHDTIKLVIALAAQNSWPIFQLDVKSAFLHVNLKEEVFVEQ 96          
BLAST of mRNA_H-paniculata_contig48872.12029.1 vs. uniprot
Match: A0A5E4GEL9_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GEL9_PRUDU)

HSP 1 Score: 48.1 bits (113), Expect = 1.880e-5
Identity = 20/50 (40.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:    1 VDFLEVFVPTVAASSVKTVIAVAVENNWGMWQLDVKQALIQANLDFEVFI 150
            +DF E F P     +++T+IA+A +  W +WQLDVK A +   L+ EV++
Sbjct:   14 IDFNETFAPAARLDTIRTLIALAAQKGWKLWQLDVKSAFLNGVLEEEVYV 63          
BLAST of mRNA_H-paniculata_contig48872.12029.1 vs. uniprot
Match: A0A5N5G876_9ROSA (Uncharacterized protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G876_9ROSA)

HSP 1 Score: 50.4 bits (119), Expect = 3.210e-5
Identity = 20/50 (40.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    1 VDFLEVFVPTVAASSVKTVIAVAVENNWGMWQLDVKQALIQANLDFEVFI 150
            +D+ EVF P     +++ VI++A + NWG++QLDVK A +   ++ EVF+
Sbjct: 1019 IDYAEVFAPVARLDTIRVVISLAAQKNWGIYQLDVKSAFLHGEIEEEVFV 1068          
BLAST of mRNA_H-paniculata_contig48872.12029.1 vs. uniprot
Match: A0A392LYK8_9FABA (Copia-type polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392LYK8_9FABA)

HSP 1 Score: 50.1 bits (118), Expect = 4.380e-5
Identity = 25/78 (32.05%), Postives = 43/78 (55.13%), Query Frame = 1
Query:    1 VDFLEVFVPTVAASSVKTVIAVAVENNWGMWQLDVKQALIQANLDFEVFIRELIARKFLRIEYKKGEDQPADILTKPL 234
            +DF EVF P     +++TV+A+A EN+W ++QLDVK A +   L  ++++ + +        Y  G++     L K L
Sbjct:  894 IDFNEVFAPVARWETIRTVLAIAAENSWNVFQLDVKSAFLHGELTEDIYVNQPLG-------YDNGDNSMVYKLNKAL 964          
BLAST of mRNA_H-paniculata_contig48872.12029.1 vs. uniprot
Match: A0A438C7M9_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438C7M9_VITVI)

HSP 1 Score: 49.7 bits (117), Expect = 5.690e-5
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    1 VDFLEVFVPTVAASSVKTVIAVAVENNWGMWQLDVKQALIQANLDFEVFI 150
            VD+ EVF P     +++ VIA+A +N+W ++QLDVK A +  NL+ +VF+
Sbjct:  242 VDYKEVFAPVARHDTIRLVIALATQNSWPIFQLDVKSAFLHGNLEEQVFV 291          
BLAST of mRNA_H-paniculata_contig48872.12029.1 vs. uniprot
Match: A0A438F076_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438F076_VITVI)

HSP 1 Score: 49.7 bits (117), Expect = 5.820e-5
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    1 VDFLEVFVPTVAASSVKTVIAVAVENNWGMWQLDVKQALIQANLDFEVFI 150
            VD+ EVF P     +++ VIA+A +N+W ++QLDVK A +  NL+ +VF+
Sbjct:  293 VDYKEVFAPVARHDTIRLVIALAAQNSWPIFQLDVKSAFLHGNLEEQVFV 342          
BLAST of mRNA_H-paniculata_contig48872.12029.1 vs. uniprot
Match: A0A438JEB0_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JEB0_VITVI)

HSP 1 Score: 49.7 bits (117), Expect = 5.830e-5
Identity = 20/52 (38.46%), Postives = 34/52 (65.38%), Query Frame = 1
Query:    1 VDFLEVFVPTVAASSVKTVIAVAVENNWGMWQLDVKQALIQANLDFEVFIRE 156
            VDF E F P     +++T+IAVA +  W ++QLD+K A +  NL+ E+++ +
Sbjct:  340 VDFHETFAPVARLDTIRTIIAVAAQKGWLLYQLDIKSAFLNGNLEEEIYVEQ 391          
BLAST of mRNA_H-paniculata_contig48872.12029.1 vs. uniprot
Match: A0A445J314_GLYSO (tRNA(Ile)-lysidine synthetase n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445J314_GLYSO)

HSP 1 Score: 49.7 bits (117), Expect = 5.950e-5
Identity = 26/78 (33.33%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 VDFLEVFVPTVAASSVKTVIAVAVENNWGMWQLDVKQALIQANLDFEVFIRELIARKFLRIEYKKGEDQPADILTKPL 234
            V++ EVF P     +++ ++ +A +NNW ++QLDVK A +   L+ EVF+++ +  +      KKGE+     L K L
Sbjct:  336 VNYTEVFAPVARLDTIRLILDLAAQNNWDVFQLDVKSAFLHGELNEEVFVQQPLGYE------KKGEEGKVYKLRKTL 407          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48872.12029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
UPI00090546287.420e-754.90uncharacterized protein LOC109205763 n=1 Tax=Nicot... [more]
A0A445FKH7_GLYSO9.190e-637.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A5B6WZF5_9ROSI1.180e-546.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A5E4GEL9_PRUDU1.880e-540.00PREDICTED: Retrovirus-related Pol poly from (Fragm... [more]
A0A5N5G876_9ROSA3.210e-540.00Uncharacterized protein n=1 Tax=Pyrus ussuriensis ... [more]
A0A392LYK8_9FABA4.380e-532.05Copia-type polyprotein n=1 Tax=Trifolium medium Ta... [more]
A0A438C7M9_VITVI5.690e-544.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A438F076_VITVI5.820e-544.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JEB0_VITVI5.830e-538.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A445J314_GLYSO5.950e-533.33tRNA(Ile)-lysidine synthetase n=1 Tax=Glycine soja... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48872contigH-paniculata_contig48872:1130..1384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930443.838972-CDS-H-paniculata_contig48872:1129..13841622930443.838972-CDS-H-paniculata_contig48872:1129..1384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48872 1130..1384 -
1691481294.9199178-CDS-H-paniculata_contig48872:1129..13841691481294.9199178-CDS-H-paniculata_contig48872:1129..1384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48872 1130..1384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48872.12029.1prot_H-paniculata_contig48872.12029.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48872 1130..1384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48872.12029.1

>prot_H-paniculata_contig48872.12029.1 ID=prot_H-paniculata_contig48872.12029.1|Name=mRNA_H-paniculata_contig48872.12029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
VDFLEVFVPTVAASSVKTVIAVAVENNWGMWQLDVKQALIQANLDFEVFI
RELIARKFLRIEYKKGEDQPADILTKPLEHGSFER
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mRNA from alignment at H-paniculata_contig48872:1130..1384-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48872.12029.1 ID=mRNA_H-paniculata_contig48872.12029.1|Name=mRNA_H-paniculata_contig48872.12029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig48872:1130..1384- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGATTTTCTCGAAGTGTTTGTTCCTACGGTAGCCGCTTCCAGTGTGAA GACGGTAATTGCTGTTGCTGTCGAAAACAACTGGGGAATGTGGCAACTTG ATGTAAAACAGGCTCTTATTCAGGCGAATTTAGATTTCGAGGTGTTCATT CGAGAGTTGATTGCGAGGAAATTTTTAAGGATAGAATACAAGAAGGGTGA GGATCAACCGGCTGACATTCTAACCAAACCGCTCGAGCACGGGTCGTTTG AACGA
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Coding sequence (CDS) from alignment at H-paniculata_contig48872:1130..1384-

>mRNA_H-paniculata_contig48872.12029.1 ID=mRNA_H-paniculata_contig48872.12029.1|Name=mRNA_H-paniculata_contig48872.12029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig48872:1130..1384- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGATTTTCTCGAAGTGTTTGTTCCTACGGTAGCCGCTTCCAGTGTGAA
GACGGTAATTGCTGTTGCTGTCGAAAACAACTGGGGAATGTGGCAACTTG
ATGTAAAACAGGCTCTTATTCAGGCGAATTTAGATTTCGAGGTGTTCATT
CGAGAGTTGATTGCGAGGAAATTTTTAAGGATAGAATACAAGAAGGGTGA
GGATCAACCGGCTGACATTCTAACCAAACCGCTCGAGCACGGGTCGTTTG
AACGAGTTGATTTTCTCGAAGTGTTTGTTCCTACGGTAGCCGCTTCCAGT
GTGAAGACGGTAATTGCTGTTGCTGTCGAAAACAACTGGGGAATGTGGCA
ACTTGATGTAAAACAGGCTCTTATTCAGGCGAATTTAGATTTCGAGGTGT
TCATTCGAGAGTTGATTGCGAGGAAATTTTTAAGGATAGAATACAAGAAG
GGTGAGGATCAACCGGCTGACATTCTAACCAAACCGCTCGAGCACGGGTC
GTTTGAACGA
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