prot_H-paniculata_contig48782.12014.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig48782.12014.1
Unique Nameprot_H-paniculata_contig48782.12014.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length81
Homology
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 64.3 bits (155), Expect = 1.330e-10
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 0
Query:    1 LLHERLGHVR--------DLPAVARQQGIRLSEKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVD 81
            L H+R GH+         ++      +GI+   K GVC+ CE+ K +K+       ER  EPLELVHTD+ GPV+ +S GG R+AI F D
Sbjct:    3 LWHQRFGHINYEYLRQMGEIDDTGVPKGIK---KPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTD 89          
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.910e-10
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 0
Query:    1 LLHERLGHVR--------DLPAVARQQGIRLSEKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVD 81
            L H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELVHTD+ GPV+ +S GG R+AI F D
Sbjct:   23 LWHQRFGHMNYEYLRQMGEIDGTGVPKGIK---KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTD 109          
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.470e-10
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 0
Query:    1 LLHERLGHVR--------DLPAVARQQGIRLSEKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVD 81
            L H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELVHTD+ GPV+ +S GG R+AI F D
Sbjct:   23 LWHQRFGHMNYEYLRQMGEIDGTGVPKGIK---KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTD 109          
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: A0A0V1NJF3_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T8 TaxID=92180 RepID=A0A0V1NJF3_9BILA)

HSP 1 Score: 64.3 bits (155), Expect = 3.540e-10
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 0
Query:    3 HERLGHV--RDLPAVARQQ---GIRLS-EKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIIFVD 81
            H RLGH+  R L  + R +   G+++  EKL VC  C KGK ++ P  K + +R   PLEL+HTDI GP+   S GG ++ + F+D
Sbjct:  382 HRRLGHLNERSLLELTRHEKVFGMKVGKEKLPVCEICIKGKQTQSPFPKNQAKRRCRPLELIHTDICGPMRQNSIGGSKYFVTFID 467          
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.540e-10
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 0
Query:    1 LLHERLGHVR--------DLPAVARQQGIRLSEKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVD 81
            L H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELVHTD+ GPV+ +S GG R+AI F D
Sbjct:   69 LWHQRFGHINYEYLKQMGEIDDTGVPKGIK---KPGVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTD 155          
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: A0A0V0T740_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Trichinella TaxID=6333 RepID=A0A0V0T740_9BILA)

HSP 1 Score: 64.3 bits (155), Expect = 3.580e-10
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 0
Query:    3 HERLGHV--RDLPAVARQQ---GIRLS-EKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIIFVD 81
            H RLGH+  R L  + R +   G+++  EKL VC  C KGK ++ P  K + +R   PLEL+HTDI GP+   S GG ++ + F+D
Sbjct:  612 HRRLGHLNERSLLELTRHEKVFGMKVGKEKLPVCEICIKGKQTQSPFPKNQAKRRCRPLELIHTDICGPMRQNSIGGSKYFVTFID 697          
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.750e-10
Identity = 36/90 (40.00%), Postives = 51/90 (56.67%), Query Frame = 0
Query:    1 LLHERLGHVR--------DLPAVARQQGIRLSEKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVD 81
            L H+R GH+         ++      +GI+   K G+C+ CE+ K +K+       ER  EPLELVHTD+ GPV+ +S GG R+AI F D
Sbjct:   73 LWHQRFGHINYEYLRQMGEIDDTGVPKGIK---KPGICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTD 159          
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: A0A0V1GS48_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1GS48_9BILA)

HSP 1 Score: 63.5 bits (153), Expect = 6.670e-10
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 0
Query:    3 HERLGHV--RDLPAVARQQ---GIRLS-EKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIIFVD 81
            H RLGH+  R L  + + +   G+++  EKL +C  C KGK ++ P  K + +R   PLEL+HTDI GP+   S GG ++ + F+D
Sbjct:  477 HRRLGHLNERSLQELTKHEKVFGMKVGKEKLPICEICIKGKQTQSPFPKSQTKRRCRPLELIHTDICGPMRQNSIGGSKYFVTFID 562          
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: A0A0V0ZEH1_9BILA (Copia protein (Fragment) n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V0ZEH1_9BILA)

HSP 1 Score: 63.2 bits (152), Expect = 9.020e-10
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 0
Query:    3 HERLGHVRD--LPAVARQQ---GIRLS-EKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIIFVD 81
            H RLGH+ +  L  + R +   G+++  EKL VC  C KGK ++ P  K + +R   PLEL+HTDI GP+   S GG ++ + F+D
Sbjct:  297 HRRLGHLNEKSLLELTRHEKVFGMKVGKEKLPVCEICIKGKQTQSPFPKSQTKRRCRPLELIHTDICGPMRQNSIGGSKYFVAFID 382          
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: A0A0V0RKA4_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella nelsoni TaxID=6336 RepID=A0A0V0RKA4_9BILA)

HSP 1 Score: 61.6 bits (148), Expect = 3.020e-9
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 0
Query:    3 HERLGHVRDLPAVA-----RQQGIRLS-EKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIIFVD 81
            H RLGH+ +   +      +  G+++  EKL VC  C KGK ++ P  K + +R   PLEL+HTDI GP+   S GG ++ + F+D
Sbjct:    4 HRRLGHLNERSLLELTWHEKVFGMKVGKEKLPVCEICIKGKQTQSPFPKSQTKRRCRPLELIHTDICGPMRQNSIGGSKYFVTFID 89          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K8YS61_NANGC1.330e-1041.11Retrovirus-related pol polyprotein from transposon... [more]
W7TGQ6_9STRA2.910e-1041.11Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
W7TIQ5_9STRA3.470e-1041.11Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A0V1NJF3_9BILA3.540e-1041.86Retrovirus-related Pol polyprotein from transposon... [more]
W7T174_9STRA3.540e-1041.11Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A0V0T740_9BILA3.580e-1041.86Retrovirus-related Pol polyprotein from transposon... [more]
W7T9I7_9STRA4.750e-1040.00Copia-like retrotransposable element n=1 Tax=Nanno... [more]
A0A0V1GS48_9BILA6.670e-1039.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0ZEH1_9BILA9.020e-1040.70Copia protein (Fragment) n=3 Tax=Trichinella TaxID... [more]
A0A0V0RKA4_9BILA3.020e-938.37Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48782contigH-paniculata_contig48782:1144..1386 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48782.12014.1mRNA_H-paniculata_contig48782.12014.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig48782 1144..1386 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig48782.12014.1 ID=prot_H-paniculata_contig48782.12014.1|Name=mRNA_H-paniculata_contig48782.12014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
LLHERLGHVRDLPAVARQQGIRLSEKLGVCSACEKGKASKQPVKKYREER
TTEPLELVHTDIAGPVDKSFGGCRFAIIFVD
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