mRNA_H-paniculata_contig48782.12014.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48782.12014.1
Unique NamemRNA_H-paniculata_contig48782.12014.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 64.3 bits (155), Expect = 1.330e-10
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:    1 LLHERLGHVR--------DLPAVARQQGIRLSEKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVD 243
            L H+R GH+         ++      +GI+   K GVC+ CE+ K +K+       ER  EPLELVHTD+ GPV+ +S GG R+AI F D
Sbjct:    3 LWHQRFGHINYEYLRQMGEIDDTGVPKGIK---KPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTD 89
[Close]
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.910e-10
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:    1 LLHERLGHVR--------DLPAVARQQGIRLSEKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVD 243
            L H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELVHTD+ GPV+ +S GG R+AI F D
Sbjct:   23 LWHQRFGHMNYEYLRQMGEIDGTGVPKGIK---KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTD 109
[Close]
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.470e-10
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:    1 LLHERLGHVR--------DLPAVARQQGIRLSEKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVD 243
            L H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELVHTD+ GPV+ +S GG R+AI F D
Sbjct:   23 LWHQRFGHMNYEYLRQMGEIDGTGVPKGIK---KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTD 109
[Close]
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: A0A0V1NJF3_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T8 TaxID=92180 RepID=A0A0V1NJF3_9BILA)

HSP 1 Score: 64.3 bits (155), Expect = 3.540e-10
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    7 HERLGHV--RDLPAVARQQ---GIRLS-EKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIIFVD 243
            H RLGH+  R L  + R +   G+++  EKL VC  C KGK ++ P  K + +R   PLEL+HTDI GP+   S GG ++ + F+D
Sbjct:  382 HRRLGHLNERSLLELTRHEKVFGMKVGKEKLPVCEICIKGKQTQSPFPKNQAKRRCRPLELIHTDICGPMRQNSIGGSKYFVTFID 467
[Close]
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.540e-10
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:    1 LLHERLGHVR--------DLPAVARQQGIRLSEKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVD 243
            L H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELVHTD+ GPV+ +S GG R+AI F D
Sbjct:   69 LWHQRFGHINYEYLKQMGEIDDTGVPKGIK---KPGVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTD 155
[Close]
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: A0A0V0T740_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Trichinella TaxID=6333 RepID=A0A0V0T740_9BILA)

HSP 1 Score: 64.3 bits (155), Expect = 3.580e-10
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    7 HERLGHV--RDLPAVARQQ---GIRLS-EKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIIFVD 243
            H RLGH+  R L  + R +   G+++  EKL VC  C KGK ++ P  K + +R   PLEL+HTDI GP+   S GG ++ + F+D
Sbjct:  612 HRRLGHLNERSLLELTRHEKVFGMKVGKEKLPVCEICIKGKQTQSPFPKNQAKRRCRPLELIHTDICGPMRQNSIGGSKYFVTFID 697
[Close]
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.750e-10
Identity = 36/90 (40.00%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:    1 LLHERLGHVR--------DLPAVARQQGIRLSEKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVD 243
            L H+R GH+         ++      +GI+   K G+C+ CE+ K +K+       ER  EPLELVHTD+ GPV+ +S GG R+AI F D
Sbjct:   73 LWHQRFGHINYEYLRQMGEIDDTGVPKGIK---KPGICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTD 159
[Close]
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: A0A0V1GS48_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1GS48_9BILA)

HSP 1 Score: 63.5 bits (153), Expect = 6.670e-10
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    7 HERLGHV--RDLPAVARQQ---GIRLS-EKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIIFVD 243
            H RLGH+  R L  + + +   G+++  EKL +C  C KGK ++ P  K + +R   PLEL+HTDI GP+   S GG ++ + F+D
Sbjct:  477 HRRLGHLNERSLQELTKHEKVFGMKVGKEKLPICEICIKGKQTQSPFPKSQTKRRCRPLELIHTDICGPMRQNSIGGSKYFVTFID 562
[Close]
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: A0A0V0ZEH1_9BILA (Copia protein (Fragment) n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V0ZEH1_9BILA)

HSP 1 Score: 63.2 bits (152), Expect = 9.020e-10
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    7 HERLGHVRD--LPAVARQQ---GIRLS-EKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIIFVD 243
            H RLGH+ +  L  + R +   G+++  EKL VC  C KGK ++ P  K + +R   PLEL+HTDI GP+   S GG ++ + F+D
Sbjct:  297 HRRLGHLNEKSLLELTRHEKVFGMKVGKEKLPVCEICIKGKQTQSPFPKSQTKRRCRPLELIHTDICGPMRQNSIGGSKYFVAFID 382
[Close]
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Match: A0A0V0RKA4_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella nelsoni TaxID=6336 RepID=A0A0V0RKA4_9BILA)

HSP 1 Score: 61.6 bits (148), Expect = 3.020e-9
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:    7 HERLGHVRDLPAVA-----RQQGIRLS-EKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIIFVD 243
            H RLGH+ +   +      +  G+++  EKL VC  C KGK ++ P  K + +R   PLEL+HTDI GP+   S GG ++ + F+D
Sbjct:    4 HRRLGHLNERSLLELTWHEKVFGMKVGKEKLPVCEICIKGKQTQSPFPKSQTKRRCRPLELIHTDICGPMRQNSIGGSKYFVTFID 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48782.12014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K8YS61_NANGC1.330e-1041.11Retrovirus-related pol polyprotein from transposon... [more]
W7TGQ6_9STRA2.910e-1041.11Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
W7TIQ5_9STRA3.470e-1041.11Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A0V1NJF3_9BILA3.540e-1041.86Retrovirus-related Pol polyprotein from transposon... [more]
W7T174_9STRA3.540e-1041.11Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A0V0T740_9BILA3.580e-1041.86Retrovirus-related Pol polyprotein from transposon... [more]
W7T9I7_9STRA4.750e-1040.00Copia-like retrotransposable element n=1 Tax=Nanno... [more]
A0A0V1GS48_9BILA6.670e-1039.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0ZEH1_9BILA9.020e-1040.70Copia protein (Fragment) n=3 Tax=Trichinella TaxID... [more]
A0A0V0RKA4_9BILA3.020e-938.37Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48782contigH-paniculata_contig48782:1144..1386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score62.4
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog7425.NV17383-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930442.046086-CDS-H-paniculata_contig48782:1143..13861622930442.046086-CDS-H-paniculata_contig48782:1143..1386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48782 1144..1386 +
1691481294.062173-CDS-H-paniculata_contig48782:1143..13861691481294.062173-CDS-H-paniculata_contig48782:1143..1386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48782 1144..1386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48782.12014.1prot_H-paniculata_contig48782.12014.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48782 1144..1386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48782.12014.1

>prot_H-paniculata_contig48782.12014.1 ID=prot_H-paniculata_contig48782.12014.1|Name=mRNA_H-paniculata_contig48782.12014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
LLHERLGHVRDLPAVARQQGIRLSEKLGVCSACEKGKASKQPVKKYREER
TTEPLELVHTDIAGPVDKSFGGCRFAIIFVD
back to top

mRNA from alignment at H-paniculata_contig48782:1144..1386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48782.12014.1 ID=mRNA_H-paniculata_contig48782.12014.1|Name=mRNA_H-paniculata_contig48782.12014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig48782:1144..1386+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACTACACGAGCGACTTGGGCATGTTCGAGACCTTCCCGCAGTCGCGCG
GCAACAAGGCATAAGGTTAAGCGAGAAGCTCGGTGTCTGCTCGGCGTGTG
AGAAGGGGAAAGCGTCGAAGCAGCCCGTCAAAAAGTATCGAGAAGAGCGG
ACGACCGAGCCGTTGGAGCTGGTGCACACCGACATAGCCGGACCGGTGGA
CAAGTCCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTCGAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig48782:1144..1386+

>mRNA_H-paniculata_contig48782.12014.1 ID=mRNA_H-paniculata_contig48782.12014.1|Name=mRNA_H-paniculata_contig48782.12014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig48782:1144..1386+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACTACACGAGCGACTTGGGCATGTTCGAGACCTTCCCGCAGTCGCGCG
GCAACAAGGCATAAGGTTAAGCGAGAAGCTCGGTGTCTGCTCGGCGTGTG
AGAAGGGGAAAGCGTCGAAGCAGCCCGTCAAAAAGTATCGAGAAGAGCGG
ACGACCGAGCCGTTGGAGCTGGTGCACACCGACATAGCCGGACCGGTGGA
CAAGTCCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTCGACTTACTAC
ACGAGCGACTTGGGCATGTTCGAGACCTTCCCGCAGTCGCGCGGCAACAA
GGCATAAGGTTAAGCGAGAAGCTCGGTGTCTGCTCGGCGTGTGAGAAGGG
GAAAGCGTCGAAGCAGCCCGTCAAAAAGTATCGAGAAGAGCGGACGACCG
AGCCGTTGGAGCTGGTGCACACCGACATAGCCGGACCGGTGGACAAGTCC
TTCGGAGGATGTCGCTTCGCCATCATCTTCGTCGAC
back to top