mRNA_H-paniculata_contig4875.12010.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4875.12010.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE) HSP 1 Score: 174 bits (440), Expect = 1.680e-49 Identity = 107/252 (42.46%), Postives = 143/252 (56.75%), Query Frame = 3
Query: 69 CPCSFSRSYTGKEGFATIAYQATVDHSGRVLAVTEGFPGATNDKSIIRYNLTVQMVREDSMYRDRTFRLYNEDGTWTEHKGVYLLVNSGYHEWAMLMPPSKRAICGEETRWSKTLGSVRTDVECFFGVLKGRFRILKFPPLPRKRGHRQR-----------LLRILHPPQHAANS*RIGRTGGRHGLDVAGRS--SRPRSRRSRDGL*SGRDQTQLRGQRGTKRGIGLPRAEEKVIAHFSYRRQMNDITWLT 785
CP + +RSYTGKEG+ T+AYQ TVDH+ RVLAVT GF G+TNDKSIIRY+ V +RED +Y ++ F +Y DGT + KG YLLV++GYH+W L+PPSK I + +SK L SVR DVECFFG++KG FRILK +P H+Q L +LH + + G GL A S S G + + ++ T+R +++IA F YR+ NDI WL+
Sbjct: 2 CPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLS-IPY---HKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRR--------KQLIASFVYRKSKNDIAWLS 241
BLAST of mRNA_H-paniculata_contig4875.12010.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 178 bits (452), Expect = 1.050e-48 Identity = 110/256 (42.97%), Postives = 146/256 (57.03%), Query Frame = 3
Query: 63 PW--CPCSFSRSYTGKEGFATIAYQATVDHSGRVLAVTEGFPGATNDKSIIRYNLTVQMVREDSMYRDRTFRLYNEDGTWTEHKGVYLLVNSGYHEWAMLMPPSKRAICGEETRWSKTLGSVRTDVECFFGVLKGRFRILKFPPLPRKRGHRQR-----------LLRILHPPQHAANS*RIGRTGGRHGLDVAGRS--SRPRSRRSRDGL*SGRDQTQLRGQRGTKRGIGLPRAEEKVIAHFSYRRQMNDITWLT 785
PW CP + +RSYTGKEG+ T+AYQ TVDH+ RVLAVT GF G+TNDKSIIRY+ V +RED +Y ++ F +Y DGT + KG YLLV++GYH+W L+PPSK I + +SK L SVR DVECFFG++KGRFRILK +P H+Q L +LH + + G GL A S S G + + ++ T+R +++IA F YR+ NDI WL+
Sbjct: 239 PWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLS-IPY---HKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRR--------KQLIASFVYRKSKNDIAWLS 482
BLAST of mRNA_H-paniculata_contig4875.12010.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI) HSP 1 Score: 169 bits (427), Expect = 6.010e-47 Identity = 77/136 (56.62%), Postives = 102/136 (75.00%), Query Frame = 3
Query: 69 CPCSFSRSYTGKEGFATIAYQATVDHSGRVLAVTEGFPGATNDKSIIRYNLTVQMVREDSMYRDRTFRLYNEDGTWTEHKGVYLLVNSGYHEWAMLMPPSKRAICGEETRWSKTLGSVRTDVECFFGVLKGRFRIL 476
CP + +RSYTGKEGF TI YQ TVDH+GR +AVTEGF G+TNDK+ + ++ V+ +R D Y ++TF +YN+DGT T KG Y+LV++GYH+W +L+ PSK + + +SK L SVR DVECFFG+LKGR RIL
Sbjct: 45 CPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRIL 180
BLAST of mRNA_H-paniculata_contig4875.12010.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE) HSP 1 Score: 169 bits (428), Expect = 1.130e-46 Identity = 79/137 (57.66%), Postives = 102/137 (74.45%), Query Frame = 3
Query: 69 CPCSFSRSYTGKEGFATIAYQATVDHSGRVLAVTEGFPGATNDKSIIRYNLTVQMVREDSMYRDRTFRLYNEDGTWTEHKGVYLLVNSGYHEWAMLMPPSKRAICGEETRWSKTLGSVRTDVECFFGVLKGRFRILK 479
CP + +RSYTGK+ F TIAYQ TVDH+ R +AVTEGF G+TNDK+I+ ++ V +R D Y ++TF LYNEDGT T KG Y L ++GYH+W +L+ PSK + ++ +SK L SVR DVECFFG+LKGRFRILK
Sbjct: 90 CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILK 226
BLAST of mRNA_H-paniculata_contig4875.12010.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE) HSP 1 Score: 163 bits (413), Expect = 2.860e-45 Identity = 106/272 (38.97%), Postives = 145/272 (53.31%), Query Frame = 3
Query: 69 CPCSFSRSYTGKEGFATIAYQATVDHSGRVLAVTEGFPGATNDKSIIRYNLTVQMVREDSMYRDRTFRLYNEDGTWTEHKGVYLLVNSGYHEWAMLMPPSKRAICGEETRWSKTLGSVRTDVECFFGVLKGRFRILKFPPLPRKRGHRQRLLR---ILHPPQHAANS*RIGRTGGRHGLDVAGR------SSRPRSRRSRDGL*SGRDQTQLRGQRGTKRGIGLPRAEEK-----------------------VIAHFSYRRQMNDITWLTR 788
CP + RS+TGKEGF TIAY+ TVDH GR LAVT GF GATNDK+IIRY+ V +R +S Y +R ++L +GT +G +L++++ YHEW L+ PSK ++T +S+ L SVR DVECFFG+LKGRFRILK KR + + ILH H + GLDV S+ D L D T + G+K + LP+ E+ +I F++R+++NDITWL+R
Sbjct: 2 CPFTLGRSFTGKEGFPTIAYEVTVDHVGRALAVTNGFTGATNDKTIIRYDSGVNNIRTESQYTEREYKLRKVNGTERTRRGCFLIMDNWYHEWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFD-----------GLDVFDENTDWTGSAGHHDAWEHDPL---TDYTSV----GSKGVLLLPKEGEEEECGEGGHVRKERHPDHAELKRQLIESFAFRKKINDITWLSR 255
BLAST of mRNA_H-paniculata_contig4875.12010.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 166 bits (420), Expect = 1.060e-44 Identity = 80/137 (58.39%), Postives = 101/137 (73.72%), Query Frame = 3
Query: 69 CPCSFSRSYTGKEGFATIAYQATVDHSGRVLAVTEGFPGATNDKSIIRYNLTVQMVREDSMYRDRTFRLYNEDGTWTEHKGVYLLVNSGYHEWAMLMPPSKRAICGEETRWSKTLGSVRTDVECFFGVLKGRFRILK 479
CP + +R YTGKEG T+A+Q TVDHSGRVLAVT GF GATNDK+IIRY+ V +R D +Y ++ ++LY +DG E KG YLLV++GYH+W L+PPSK I + +SK L S R DVEC+FG+LKGRFRI K
Sbjct: 168 CPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINK 304
BLAST of mRNA_H-paniculata_contig4875.12010.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 164 bits (415), Expect = 4.060e-44 Identity = 75/137 (54.74%), Postives = 101/137 (73.72%), Query Frame = 3
Query: 69 CPCSFSRSYTGKEGFATIAYQATVDHSGRVLAVTEGFPGATNDKSIIRYNLTVQMVREDSMYRDRTFRLYNEDGTWTEHKGVYLLVNSGYHEWAMLMPPSKRAICGEETRWSKTLGSVRTDVECFFGVLKGRFRILK 479
CP + +RSYTGKEG T+ YQ TV+H+GR +AVTEGF +TNDK+ + ++ V+ +R D+ Y ++TF +YNEDGT T KG YLLV++GYH+W +LM P+K + + +SK L SVR DVECFFG+LKG FRI K
Sbjct: 185 CPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQK 321
BLAST of mRNA_H-paniculata_contig4875.12010.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 166 bits (420), Expect = 6.140e-44 Identity = 80/137 (58.39%), Postives = 101/137 (73.72%), Query Frame = 3
Query: 69 CPCSFSRSYTGKEGFATIAYQATVDHSGRVLAVTEGFPGATNDKSIIRYNLTVQMVREDSMYRDRTFRLYNEDGTWTEHKGVYLLVNSGYHEWAMLMPPSKRAICGEETRWSKTLGSVRTDVECFFGVLKGRFRILK 479
CP + +R YTGKEG T+A+Q TVDHSGRVLAVT GF GATNDK+IIRY+ V +R D +Y ++ ++LY +DG E KG YLLV++GYH+W L+PPSK I + +SK L S R DVEC+FG+LKGRFRI K
Sbjct: 259 CPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINK 395
BLAST of mRNA_H-paniculata_contig4875.12010.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 160 bits (404), Expect = 4.400e-42 Identity = 82/165 (49.70%), Postives = 105/165 (63.64%), Query Frame = 3
Query: 69 CPCSFSRSYTGKEGFATIAYQATVDHSGRVLAVTEGFPGATNDKSIIRYNLTVQMVREDSMYR----------------------------DRTFRLYNEDGTWTEHKGVYLLVNSGYHEWAMLMPPSKRAICGEETRWSKTLGSVRTDVECFFGVLKGRFRILK 479
CP + +RSYTGKEGF TIAYQ TVDH+GR +AVTEGF G+TNDK+I+ ++ V+ + D Y ++TF +YNEDGT T KG YLLV++GYH+W +L+ PSK + + +SK L SVR DVECFFG+LKGRFRILK
Sbjct: 172 CPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILK 336
BLAST of mRNA_H-paniculata_contig4875.12010.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 157 bits (398), Expect = 4.470e-41 Identity = 76/137 (55.47%), Postives = 98/137 (71.53%), Query Frame = 3
Query: 69 CPCSFSRSYTGKEGFATIAYQATVDHSGRVLAVTEGFPGATNDKSIIRYNLTVQMVREDSMYRDRTFRLYNEDGTWTEHKGVYLLVNSGYHEWAMLMPPSKRAICGEETRWSKTLGSVRTDVECFFGVLKGRFRILK 479
CP + RSYTGKEG T+ YQ TV+H+GRVLAVTEGF G+TNDK+II + V +R D Y ++ F ++ +DGT KG YL+V++GYH+W ML+ PSK + + +SK L SVR DVECFFG+LK RFRILK
Sbjct: 214 CPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILK 350 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4875.12010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4875.12010.1 >prot_H-paniculata_contig4875.12010.1 ID=prot_H-paniculata_contig4875.12010.1|Name=mRNA_H-paniculata_contig4875.12010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp MVREDSMYRDRTFRLYNEDGTWTEHKGVYLLVNSGYHEWAMLMPPSKRAIback to top mRNA from alignment at H-paniculata_contig4875:13700..15021- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4875.12010.1 ID=mRNA_H-paniculata_contig4875.12010.1|Name=mRNA_H-paniculata_contig4875.12010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1322bp|location=Sequence derived from alignment at H-paniculata_contig4875:13700..15021- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4875:13700..15021- >mRNA_H-paniculata_contig4875.12010.1 ID=mRNA_H-paniculata_contig4875.12010.1|Name=mRNA_H-paniculata_contig4875.12010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig4875:13700..15021- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |