prot_H-paniculata_contig4872.12005.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig4872.12005.1
Unique Name	prot_H-paniculata_contig4872.12005.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	163

Homology

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BLAST of mRNA_H-paniculata_contig4872.12005.1 vs. uniprot
Match: D8LD63_ECTSI (Rhomboid-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD63_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 6.510e-39
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 0

Query:   22 QVGVGASGAIYAIMGGWLSHITCTWGEEDEFDKCGQLTQALFFTLFGMILSIAPIVDWAAHFGGLVSGLMLGWWLFHKRGQESRNMLREPIRQKAFRMQGTI 123
            +VGVGASGAIYAIMG WLSH+ CTW EEDEF K  QLTQ + +T+ GM  S+APIVDWAAH GGLV+G+++GW LFHK  ++SR MLREP+R++  R+QG I
Sbjct:  291 KVGVGASGAIYAIMGAWLSHVLCTWNEEDEFAKGAQLTQVVLYTMVGMAASLAPIVDWAAHVGGLVTGILVGWALFHKPVEDSR-MLREPLRRRLSRLQGKI 391

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BLAST of mRNA_H-paniculata_contig4872.12005.1 vs. uniprot
Match: A0A7S2R6S9_9STRA (Rhomboid-like protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6S9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.360e-11
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 0

Query:   23 VGVGASGAIYAIMGGWLSHITCTWGEEDEFDKCGQLTQALFFTLFGMIL----SIAPIVDWAAHFGGLVSGLMLGWWLF-HK 99
            +GVG+SGAI  I+G WL+ I C W    E ++ GQ +  L      +++    S+ P+VDWAAH GGL++G M+G  LF HK
Sbjct:  287 LGVGSSGAIMGILGAWLAEIVCAWSSTPE-EELGQRSANLVLVFLNILITLSFSLVPLVDWAAHIGGLLAGWMMGVVLFGHK 367

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BLAST of mRNA_H-paniculata_contig4872.12005.1 vs. uniprot
Match: A0A7S1FIW9_NOCSC (Rhomboid-like protease n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FIW9_NOCSC)

HSP 1 Score: 71.2 bits (173), Expect = 1.870e-11
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 0

Query:    9 YATVVPAQRMSQFQVGVGASGAIYAIMGGWLSHITCTWGEEDEFDKCGQLTQ--ALFFTLFGMI-LSIAPIVDWAAHFGGLVSGLMLGWWLFHKRGQ 102
            Y T+V +  M    +GVGASGAI  I+G W   I CTW +    DK  + +Q  A+ ++L  ++ LS  P+VDWAAH GG++ G+ LG +LF  R Q
Sbjct:  289 YGTMVSSVMMPN-TLGVGASGAICGIVGAWSVFIVCTWNQTLPRDKMTRNSQFMAVVWSLVALVALSFIPMVDWAAHIGGVIMGMGLGAFLFGFRLQ 384

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BLAST of mRNA_H-paniculata_contig4872.12005.1 vs. uniprot
Match: A9U4D9_PHYPA (RHOMBOID-like protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9U4D9_PHYPA)

HSP 1 Score: 63.2 bits (152), Expect = 9.760e-9
Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 0

Query:   19 SQFQVGVGASGAIYAIMGGWLSHITCTWGEEDEFDKCGQLTQALFFTLFGMILSIAPIVDWAAHFGGLVSGLMLGWWLFHK--RGQESRNMLREPIRQKAFRMQGTICMVILVL---LMMIFGYITFFVA 143
            +Q  V VGASGA++ ++GG +S +   W     +  CG L   +      + + + P+VD  AH GG ++GL+LG  L  K   G   R  L +P  ++  + +     +IL +   L++I G+I  FVA
Sbjct:  165 NQNGVSVGASGALFGLLGGTISDVIINWSLYSNY--CGVLLNLIILAAINLAIGLLPLVDNFAHIGGFLTGLLLGCVLLMKTQHGYVPRRDLLDPNMERPVKNRFNAFQIILFIISALVLIAGFIGGFVA 292

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BLAST of mRNA_H-paniculata_contig4872.12005.1 vs. uniprot
Match: UPI000644BFF5 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644BFF5)

HSP 1 Score: 61.6 bits (148), Expect = 3.790e-8
Identity = 24/80 (30.00%), Postives = 46/80 (57.50%), Query Frame = 0

Query:   21 FQVGVGASGAIYAIMGGWLSHITCTWGEEDEFDKCGQLTQALFFTLFGMILSIAPIVDWAAHFGGLVSGLMLGWWLFHKR 100
            + + VGASGA++ I+G + + +     + D   +   L   L      +I+S+AP +DW AH GG ++G+++ + +FH +
Sbjct:  247 WSISVGASGALFGILGAFTTRLILNSDQLDSAGRKNMLKSLLIILTINIIISLAPWIDWTAHLGGFITGMIVAYSIFHPK 326

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BLAST of mRNA_H-paniculata_contig4872.12005.1 vs. uniprot
Match: UPI00192A0BCD (RHOMBOID-like protein 5 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A0BCD)

HSP 1 Score: 60.8 bits (146), Expect = 7.120e-8
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 0

Query:   18 MSQFQVGVGASGAIYAIMGGWLSHITCTWGEEDEFDKCGQLTQALFFTLFGMILSIAPIVDWAAHFGGLVSGLMLGWWL 96
            +S  +  VGASGA++ ++G  LS +   W   D   KC  L+  +F     + + + P VD +AHFGG +SG +LG+ L
Sbjct:  226 LSHREDSVGASGALFGLLGAMLSELITNWTIYDH--KCAALSSLIFIIAINLAVGLLPHVDSSAHFGGFISGFLLGFVL 302

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BLAST of mRNA_H-paniculata_contig4872.12005.1 vs. uniprot
Match: A0A813K155_POLGL (Rhomboid-like protease n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813K155_POLGL)

HSP 1 Score: 60.5 bits (145), Expect = 1.020e-7
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 0

Query:   22 QVGVGASGAIYAIMGGWLSHITCTWGEEDEFDKCGQLTQALFFTLFGMILSIA----PIVDWAAHFGGLVSGLMLGWWLFHKRGQ 102
            ++GVG+SGA+  ++G WLS I  TW +    D   +  QA F   F +I+ +A    P++D+AAH GGL+ G+ L   LF  R Q
Sbjct:  269 KLGVGSSGALCGLVGAWLSFILITWNQTLPLDVKARNVQA-FSVGFSIIIIVASSFLPLMDFAAHIGGLIMGISLAMVLFAGRLQ 352

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BLAST of mRNA_H-paniculata_contig4872.12005.1 vs. uniprot
Match: A0A498IRU8_MALDO (RHOMBOID-like protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498IRU8_MALDO)

HSP 1 Score: 60.5 bits (145), Expect = 1.080e-7
Identity = 40/130 (30.77%), Postives = 64/130 (49.23%), Query Frame = 0

Query:   20 QFQVGVGASGAIYAIMGGWLSHITCTWGEEDEFDKCGQLTQALFFTLFGMILSIAPIVDWAAHFGGLVSGLMLGW---------WLFHKRGQESRNMLREPIRQKAFRMQGTICMVILVLLMMIFGYITF 140
            Q+ + VGASGA++ ++G  LS +T  W      +K   L   LF  +  + + I P VD  AH GG VSG +LG          WL  +     R  +  P++ K    Q  + ++ L+LL++ F ++ F
Sbjct:   82 QYGISVGASGALFGLLGSMLSDLTSNWTM--YVNKLAALLTLLFIIIINLAVGILPHVDNFAHIGGFVSGFLLGLLFFIHPQFKWLTQQNAPPGR--VTTPVKSKHKTYQYVLWVLSLILLIVGFIFLVF 207

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BLAST of mRNA_H-paniculata_contig4872.12005.1 vs. uniprot
Match: UPI0010AA9EA5 (RHOMBOID-like protein 1 isoform X1 n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010AA9EA5)

HSP 1 Score: 58.2 bits (139), Expect = 1.610e-7
Identity = 31/80 (38.75%), Postives = 45/80 (56.25%), Query Frame = 0

Query:   20 QFQVGVGASGAIYAIMGGWLSHITCTWGEEDEFDKCGQLTQALFFTLFGMILSIAPIVDWAAHFGGLVSGLMLGW-WLFH 98
            Q+ + VGASGA++ ++G  LS +T  W      +K   L   LF  +  + + I P VD  AH GG VSG +LG+ +L H
Sbjct:   54 QYGISVGASGALFGLLGSMLSELTSNWTM--YVNKLAALLTLLFIIIINLAVGILPHVDNFAHIGGFVSGFLLGFLFLIH 131

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BLAST of mRNA_H-paniculata_contig4872.12005.1 vs. uniprot
Match: A0A5N5FZB3_9ROSA (RHOMBOID-like protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FZB3_9ROSA)

HSP 1 Score: 58.9 bits (141), Expect = 2.480e-7
Identity = 40/133 (30.08%), Postives = 65/133 (48.87%), Query Frame = 0

Query:   20 QFQVGVGASGAIYAIMGGWLSHITCTWGEEDEFDKCGQLTQALFFTLFGMILSIAPIVDWAAHFGGLVSGLMLGW---------WLFHKRGQESRNMLREPIRQKAFRMQGTICMVILVLLMMIF--GYITFF 141
            Q+ + VGASGA++ ++G  LS +   W      +K   L   LF  +  + + I P VD  AH GG VSG +LG+         WL  +     R  +  P++ K    Q  + ++ L+LL++ +  G +T F
Sbjct:   74 QYGISVGASGALFGLLGSMLSELISNWTM--YVNKLAALLTLLFIIIINLAVGILPHVDNFAHIGGFVSGFLLGFLFLIRPQFKWLTQRNASPGR--VTTPVKSKHKTYQYVLWVLSLILLIVGYTLGLVTLF 202

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig4872.12005.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig4872.12005.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LD63_ECTSI	6.510e-39	65.69	Rhomboid-like protein n=1 Tax=Ectocarpus siliculos...	[more]
A0A7S2R6S9_9STRA	1.360e-11	43.90	Rhomboid-like protein n=1 Tax=Rhizochromulina mari...	[more]
A0A7S1FIW9_NOCSC	1.870e-11	43.30	Rhomboid-like protease n=1 Tax=Noctiluca scintilla...	[more]
A9U4D9_PHYPA	9.760e-9	31.54	RHOMBOID-like protein n=1 Tax=Physcomitrium patens...	[more]
UPI000644BFF5	3.790e-8	30.00	hypothetical protein n=1 Tax=Acytostelium subglobo...	[more]
UPI00192A0BCD	7.120e-8	36.71	RHOMBOID-like protein 5 n=1 Tax=Dioscorea cayennen...	[more]
A0A813K155_POLGL	1.020e-7	40.00	Rhomboid-like protease n=1 Tax=Polarella glacialis...	[more]
A0A498IRU8_MALDO	1.080e-7	30.77	RHOMBOID-like protein n=1 Tax=Malus domestica TaxI...	[more]
UPI0010AA9EA5	1.610e-7	38.75	RHOMBOID-like protein 1 isoform X1 n=1 Tax=Malus d...	[more]
A0A5N5FZB3_9ROSA	2.480e-7	30.08	RHOMBOID-like protein n=1 Tax=Pyrus ussuriensis x ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035952	Rhomboid-like superfamily	GENE3D	1.20.1540.10		coord: 3..109 e-value: 4.7E-11 score: 44.5
IPR022764	Peptidase S54, rhomboid domain	PFAM	PF01694	Rhomboid	coord: 6..99 e-value: 7.7E-12 score: 45.5
IPR002610	Peptidase S54, rhomboid	PANTHER	PTHR22936	RHOMBOID-RELATED	coord: 22..140
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 55..73
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 79..97
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 144..162
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 74..78
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 117..143
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 98..116
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 44..54
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..43
None	No IPR available	SUPERFAMILY	144091	Rhomboid-like	coord: 19..100
None	No IPR available	TMHMM	TMhelix		coord: 63..97
None	No IPR available	TMHMM	TMhelix		coord: 121..143
None	No IPR available	TMHMM	TMhelix		coord: 21..43

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig4872	contig	H-paniculata_contig4872:9794..12016 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig4872.12005.1	mRNA_H-paniculata_contig4872.12005.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig4872 9185..14669 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig4872.12005.1 ID=prot_H-paniculata_contig4872.12005.1|Name=mRNA_H-paniculata_contig4872.12005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp
MAMCRGLMYATVVPAQRMSQFQVGVGASGAIYAIMGGWLSHITCTWGEED
EFDKCGQLTQALFFTLFGMILSIAPIVDWAAHFGGLVSGLMLGWWLFHKR
GQESRNMLREPIRQKAFRMQGTICMVILVLLMMIFGYITFFVAECHLPVP
GRAPQRRPRNHA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035952	Rhomboid-like_sf
IPR022764	Peptidase_S54_rhomboid_dom
IPR002610	Peptidase_S54_rhomboid