prot_H-paniculata_contig4868.12000.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4868.12000.1
Unique Nameprot_H-paniculata_contig4868.12000.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length411
Homology
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BLAST of mRNA_H-paniculata_contig4868.12000.1 vs. uniprot
Match: A0A6H5J9Z0_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z0_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 5.270e-29
Identity = 68/139 (48.92%), Postives = 85/139 (61.15%), Query Frame = 0 
Query:   41 AAPVGFRAIGVKVMP--WKKPDNTKCHICADKFTWLNHRHRCRNCQEYVCNPCALSRKVLRAYTPPKRVCDICIDKYWAPKKPADAAATSSNDYKDQKRGRERGLSLTLAGE--SFRVDGPITAPMSVSPSTPMLEGAF 175
            A P GFR I +++ P  WK  D TKC++C D+FTWLNHRH+CRNC + VCN CA SRKV+RA T PKRVCD CI   W P+ PA     ++      K   +R +SLT++    S  VD   TAP+S  P TP   G F
Sbjct:   33 ATPRGFREIPLQITPSTWKT-DLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKVIRARTAPKRVCDTCIQNCWTPRTPAVTKPAAAAGSVVTKADGDRRVSLTVSTSDGSCPVDATATAPLS--PGTPAAAGFF 168
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BLAST of mRNA_H-paniculata_contig4868.12000.1 vs. uniprot
Match: D7G5L4_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L4_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 5.730e-15
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 0 
Query:   41 AAPVGFRAIGVKVMP--WKKPDNTKCHICADKFTWLNHRHRCRNCQEYVCNPCALSRK 96
            A P GFR I +++ P  WK  D TKC++C D+FTWLNHRH+CRNC + VCN CA SRK
Sbjct:   25 ATPRGFREIPLQITPSTWKT-DLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRK 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4868.12000.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9Z0_9PHAE5.270e-2948.92FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G5L4_ECTSI5.730e-1560.34FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..28
NoneNo IPR availablePANTHERPTHR39490:SF6ARRESTIN DOMAIN-CONTAINING PROTEIN Dcoord: 62..123
NoneNo IPR availablePANTHERPTHR39490FAMILY NOT NAMEDcoord: 62..123
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..382
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 383..407
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 408..410
NoneNo IPR availableTMHMMTMhelixcoord: 385..407
IPR000306FYVE zinc fingerSMARTSM00064fyve_4coord: 52..117
e-value: 5.5E-4
score: 22.6
IPR000306FYVE zinc fingerPFAMPF01363FYVEcoord: 56..114
e-value: 7.5E-10
score: 38.8
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 47..130
e-value: 4.5E-13
score: 50.7
IPR017455Zinc finger, FYVE-relatedPROSITEPS50178ZF_FYVEcoord: 58..116
score: 10.602
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 13..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4868contigH-paniculata_contig4868:9484..12530 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4868.12000.1mRNA_H-paniculata_contig4868.12000.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4868 9319..13259 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4868.12000.1 ID=prot_H-paniculata_contig4868.12000.1|Name=mRNA_H-paniculata_contig4868.12000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=411bp
MSLSSIEVQQQQQQQQQQQQQQQQQQQQLGHAKASSPIAGAAPVGFRAIG
VKVMPWKKPDNTKCHICADKFTWLNHRHRCRNCQEYVCNPCALSRKVLRA
YTPPKRVCDICIDKYWAPKKPADAAATSSNDYKDQKRGRERGLSLTLAGE
SFRVDGPITAPMSVSPSTPMLEGAFFAADGEGDIARVPPPLRSSSPILSP
SLLTPTLEEEGESVSAVMPMSPPLTCGTCGTCGTSGAFFDNEDDREEAAV
DMNYDGDDEASKEKTVRGQCPPLQGSIATTNELPKEPEVQKVQKQQEDGE
HCDSQLASVVQDEAVEEGEEPSVAAAATWAVAHPAGLVDATVFLLTLAAA
ALPSVMRQAASSSDGTEDGDDKREGDGLIEGQMYSFAVGLGWGVVAASVG
FGFAMLLRKL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000306Znf_FYVE
IPR013083Znf_RING/FYVE/PHD
IPR017455Znf_FYVE-rel
IPR011011Znf_FYVE_PHD