mRNA_H-paniculata_contig48644.11993.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48644.11993.1
Unique NamemRNA_H-paniculata_contig48644.11993.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig48644.11993.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.880e-10
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:   16 GGPVDLLVDSGATSHFIDTELTPRLQERLQDFKLLDKSMPIETAGKHVVYGVAEGIVDGSIIDSKGQQRHVHLRFIPVPGLGHNLFSVKIAARQGVTTI 312
            G P +  + SGA+ H++D+EL P L+  L DF  +     I  AG   + G ++GI+     D +G  R V  +   VPGLG +LFS   A ++G  TI
Sbjct:  302 GLPAEYHLISGASGHYLDSELLPDLENILDDFTYITTPTKIIGAGGIELEGTSKGIISVFAKDEEGNDRRVRFKCTVVPGLGRHLFSTGTAQKKGANTI 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48644.11993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE1.880e-1036.36Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48644contigH-paniculata_contig48644:43..357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930439.6095521-CDS-H-paniculata_contig48644:42..3571622930439.6095521-CDS-H-paniculata_contig48644:42..357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48644 43..357 -
1691481292.9525545-CDS-H-paniculata_contig48644:42..3571691481292.9525545-CDS-H-paniculata_contig48644:42..357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48644 43..357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48644.11993.1prot_H-paniculata_contig48644.11993.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48644 43..357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48644.11993.1

>prot_H-paniculata_contig48644.11993.1 ID=prot_H-paniculata_contig48644.11993.1|Name=mRNA_H-paniculata_contig48644.11993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MDATTGGPVDLLVDSGATSHFIDTELTPRLQERLQDFKLLDKSMPIETAG
KHVVYGVAEGIVDGSIIDSKGQQRHVHLRFIPVPGLGHNLFSVKIAARQG
VTTIF
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mRNA from alignment at H-paniculata_contig48644:43..357-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48644.11993.1 ID=mRNA_H-paniculata_contig48644.11993.1|Name=mRNA_H-paniculata_contig48644.11993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig48644:43..357- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGCCACTACCGGCGGTCCGGTCGATCTGCTGGTCGACAGCGGAGC
GACCTCTCACTTCATCGACACCGAGCTGACACCCCGTCTACAGGAGCGGC
TGCAAGACTTCAAGCTGTTGGACAAGTCGATGCCCATCGAGACCGCTGGC
AAGCACGTTGTCTACGGAGTTGCAGAGGGCATCGTCGACGGGTCCATCAT
CGATTCGAAGGGGCAGCAGCGGCACGTTCACCTGCGGTTCATACCAGTGC
CCGGCCTAGGGCATAACCTGTTCTCCGTCAAGATAGCTGCACGACAAGGA
GTTACCACCATCTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig48644:43..357-

>mRNA_H-paniculata_contig48644.11993.1 ID=mRNA_H-paniculata_contig48644.11993.1|Name=mRNA_H-paniculata_contig48644.11993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig48644:43..357- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGCCACTACCGGCGGTCCGGTCGATCTGCTGGTCGACAGCGGAGC
GACCTCTCACTTCATCGACACCGAGCTGACACCCCGTCTACAGGAGCGGC
TGCAAGACTTCAAGCTGTTGGACAAGTCGATGCCCATCGAGACCGCTGGC
AAGCACGTTGTCTACGGAGTTGCAGAGGGCATCGTCGACGGGTCCATCAT
CGATTCGAAGGGGCAGCAGCGGCACGTTCACCTGCGGTTCATACCAGTGC
CCGGCCTAGGGCATAACCTGTTCTCCGTCAAGATAGCTGCACGACAAGGA
GTTACCACCATCTTCATGGACGCCACTACCGGCGGTCCGGTCGATCTGCT
GGTCGACAGCGGAGCGACCTCTCACTTCATCGACACCGAGCTGACACCCC
GTCTACAGGAGCGGCTGCAAGACTTCAAGCTGTTGGACAAGTCGATGCCC
ATCGAGACCGCTGGCAAGCACGTTGTCTACGGAGTTGCAGAGGGCATCGT
CGACGGGTCCATCATCGATTCGAAGGGGCAGCAGCGGCACGTTCACCTGC
GGTTCATACCAGTGCCCGGCCTAGGGCATAACCTGTTCTCCGTCAAGATA
GCTGCACGACAAGGAGTTACCACCATCTTC
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