mRNA_H-paniculata_contig48548.11978.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48548.11978.1
Unique NamemRNA_H-paniculata_contig48548.11978.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48548.11978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48548contigH-paniculata_contig48548:414..813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930436.9938378-CDS-H-paniculata_contig48548:413..8121622930436.9938378-CDS-H-paniculata_contig48548:413..812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48548 414..812 +
1691481291.8357587-CDS-H-paniculata_contig48548:413..8121691481291.8357587-CDS-H-paniculata_contig48548:413..812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48548 414..812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48548.11978.1prot_H-paniculata_contig48548.11978.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48548 414..812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48548.11978.1

>prot_H-paniculata_contig48548.11978.1 ID=prot_H-paniculata_contig48548.11978.1|Name=mRNA_H-paniculata_contig48548.11978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
DFVAQTAPATTPGLGTATPPAKTSAAAPLDGRAATPSVFVGASLEAPTPV
ASISGGGTPREVISSLGSTDPSAGIEGSDINVHESPVPSSSGAGIGEDVS
IPFLGGKEAHRLEWTAAGPTEIMPGRTCGDVAR
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mRNA from alignment at H-paniculata_contig48548:414..813+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48548.11978.1 ID=mRNA_H-paniculata_contig48548.11978.1|Name=mRNA_H-paniculata_contig48548.11978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=400bp|location=Sequence derived from alignment at H-paniculata_contig48548:414..813+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTTCGTGGCGCAAACGGCTCCCGCAACTACCCCTGGGCTGGGGACTGC
GACACCGCCTGCAAAGACTTCGGCAGCTGCTCCGTTGGATGGGAGGGCTG
CCACACCGAGCGTTTTCGTGGGTGCCTCGTTGGAGGCGCCCACACCCGTC
GCGTCGATAAGCGGCGGGGGTACACCCAGGGAGGTAATAAGCTCTCTGGG
CAGTACTGATCCGAGCGCCGGGATAGAAGGCTCGGACATCAATGTTCACG
AGAGTCCGGTACCGTCATCCTCTGGTGCGGGGATCGGTGAAGATGTATCC
ATCCCTTTTCTAGGTGGGAAGGAAGCGCACCGACTCGAGTGGACAGCGGC
AGGACCGACGGAGATTATGCCGGGACGTACATGTGGTGATGTGGCTAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig48548:414..813+

>mRNA_H-paniculata_contig48548.11978.1 ID=mRNA_H-paniculata_contig48548.11978.1|Name=mRNA_H-paniculata_contig48548.11978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig48548:414..813+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTTCGTGGCGCAAACGGCTCCCGCAACTACCCCTGGGCTGGGGACTGC
GACACCGCCTGCAAAGACTTCGGCAGCTGCTCCGTTGGATGGGAGGGCTG
CCACACCGAGCGTTTTCGTGGGTGCCTCGTTGGAGGCGCCCACACCCGTC
GCGTCGATAAGCGGCGGGGGTACACCCAGGGAGGTAATAAGCTCTCTGGG
CAGTACTGATCCGAGCGCCGGGATAGAAGGCTCGGACATCAATGTTCACG
AGAGTCCGGTACCGTCATCCTCTGGTGCGGGGATCGGTGAAGATGTATCC
ATCCCTTTTCTAGGTGGGAAGGAAGCGCACCGACTCGAGTGGACAGCGGC
AGGACCGACGGAGATTATGCCGGGACGTACATGTGGTGATGTGGCTAGGG
ACTTCGTGGCGCAAACGGCTCCCGCAACTACCCCTGGGCTGGGGACTGCG
ACACCGCCTGCAAAGACTTCGGCAGCTGCTCCGTTGGATGGGAGGGCTGC
CACACCGAGCGTTTTCGTGGGTGCCTCGTTGGAGGCGCCCACACCCGTCG
CGTCGATAAGCGGCGGGGGTACACCCAGGGAGGTAATAAGCTCTCTGGGC
AGTACTGATCCGAGCGCCGGGATAGAAGGCTCGGACATCAATGTTCACGA
GAGTCCGGTACCGTCATCCTCTGGTGCGGGGATCGGTGAAGATGTATCCA
TCCCTTTTCTAGGTGGGAAGGAAGCGCACCGACTCGAGTGGACAGCGGCA
GGACCGACGGAGATTATGCCGGGACGTACATGTGGTGATGTGGCTAGG
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