mRNA_H-paniculata_contig48520.11972.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48520.11972.1
Unique NamemRNA_H-paniculata_contig48520.11972.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48520.11972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48520contigH-paniculata_contig48520:597..1161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size197
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930436.410295-CDS-H-paniculata_contig48520:597..6881622930436.410295-CDS-H-paniculata_contig48520:597..688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48520 598..688 -
1691481291.5647235-CDS-H-paniculata_contig48520:597..6881691481291.5647235-CDS-H-paniculata_contig48520:597..688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48520 598..688 -
1622930436.4251277-CDS-H-paniculata_contig48520:1057..11611622930436.4251277-CDS-H-paniculata_contig48520:1057..1161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48520 1058..1161 -
1691481291.5765855-CDS-H-paniculata_contig48520:1057..11611691481291.5765855-CDS-H-paniculata_contig48520:1057..1161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48520 1058..1161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48520.11972.1prot_H-paniculata_contig48520.11972.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48520 598..1161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48520.11972.1

>prot_H-paniculata_contig48520.11972.1 ID=prot_H-paniculata_contig48520.11972.1|Name=mRNA_H-paniculata_contig48520.11972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
LVDDLNGNSSGPVRAALPLINDIPVESAKMDIPSRYSNKGDTVISLGAES
NQIMETALDRARKVE
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mRNA from alignment at H-paniculata_contig48520:597..1161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48520.11972.1 ID=mRNA_H-paniculata_contig48520.11972.1|Name=mRNA_H-paniculata_contig48520.11972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=565bp|location=Sequence derived from alignment at H-paniculata_contig48520:597..1161- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTGGACGATCTCAACGGCAACAGCAGCGGTCCCGTCAGAGCAGCCCT
CCCATTGATAAACGACATACCTGTGGAGAGTGCCAAGATGGATATACCAT
CCAGGTGTTGCCTGTTCCTCGTTAACAGGCGAAAATAGTTGTTACTACTT
GAGCAGGGTTGTGGTTCATGTTTGCACATTCCTCATATTAAGGCTGCATG
TTTTTCTCTTCTATGTGGTTGTTATTGGAGCGCTCTACAACCATCACGAG
CATAATAGTAAGTAACTAGAGAAGTGATGATGTTGGGGCGTCATTGTGAC
CATCTAAATAAAGTCTTGTGTTGACACGCCTTAGACACCACCACGAGGTA
CCTGCTATATGACAATGAGGTATACTGGTTAGGCCTTGGTCATGTACTTG
GCAAAAATCCCTTCGTTTTGCCAACTTATCGTCAGTACTTCTGATAATGC
CTTGTTCTTATTTGGTATGGCAGGTACTCCAACAAGGGAGATACAGTCAT
ATCGCTGGGCGCTGAGAGTAATCAAATTATGGAGACGGCGCTTGATCGTG
CGAGGAAGGTTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig48520:597..1161-

>mRNA_H-paniculata_contig48520.11972.1 ID=mRNA_H-paniculata_contig48520.11972.1|Name=mRNA_H-paniculata_contig48520.11972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig48520:597..1161- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTGGACGATCTCAACGGCAACAGCAGCGGTCCCGTCAGAGCAGCCCT
CCCATTGATAAACGACATACCTGTGGAGAGTGCCAAGATGGATATACCAT
CCAGCTGGTGGACGATCTCAACGGCAACAGCAGCGGTCCCGTCAGAGCAG
CCCTCCCATTGATAAACGACATACCTGTGGAGAGTGCCAAGATGGATATA
CCATCCAGGTACTCCAACAAGGGAGATACAGTCATATCGCTGGGCGCTGA
GAGTAATCAAATTATGGAGACGGCGCTTGATCGTGCGAGGAAGGTTGAGG
TACTCCAACAAGGGAGATACAGTCATATCGCTGGGCGCTGAGAGTAATCA
AATTATGGAGACGGCGCTTGATCGTGCGAGGAAGGTTGAG
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