mRNA_H-paniculata_contig48519.11970.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48519.11970.1
Unique NamemRNA_H-paniculata_contig48519.11970.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig48519.11970.1 vs. uniprot
Match: A0A2Z7AL20_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AL20_9LAMI)

HSP 1 Score: 213 bits (541), Expect = 1.020e-62
Identity = 117/293 (39.93%), Postives = 178/293 (60.75%), Query Frame = 1
Query:    1 LRKSLYGLKQGGRNWNKNLDDFLVGIGLDRSTIDSCLYFSRDEGGETNLLVAVYVDDLVIAG-HREKVDEFKHNINLRFRMKDLGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPELADKPSEPKSPGVV--LGMVGSLTYAWTGTRPDIAYAIHQAARRMEDPCREDFSTCKRILRYLSTVQDLGITFDGKSDDHGLEEFVDAD*AEDVEDRKSTTRYVFKLNDGAIRWCSRKQQLVTWSSTEAEYVAAGEARKDTVYLRELLESIG 870
            L+KSLYGLKQ  R W K  D +++ +G +R + D C YF R  GG   +++ +YVDD+++AG ++++V E K  +   F MKDLG  +++LG++V  DR N  I +SQ +Y+++ L R+   + + + TP+    K+S+       +E      +     VGSL +A   TRPDIA A+   +R M +P RE +ST KRILRY+    +  + F G      L  +VD+D A D + RKSTT YVF L  GA+ W S+ Q +V  S+TEAEY+AA +A K+T++++ LLE +G
Sbjct:  127 LKKSLYGLKQAPRCWYKRFDSYIMSLGYNRLSADPCTYFKRS-GGNDYIILLLYVDDMLVAGPNKDRVQELKAQLAREFDMKDLGPANKILGMQVHRDRSNRKIWLSQTNYLQKFLHRFNMQDSKPISTPLPVNFKLSSDMCPSNEAERMEMSRIPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGREHWSTVKRILRYIKGTSNAALCFGGSY--LTLRGYVDSDYAGDPDKRKSTTGYVFTLAGGAVSWVSKLQTVVALSTTEAEYMAATQACKETIWIQRLLEELG 416          
BLAST of mRNA_H-paniculata_contig48519.11970.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 203 bits (517), Expect = 9.090e-60
Identity = 121/293 (41.30%), Postives = 167/293 (57.00%), Query Frame = 1
Query:    1 LRKSLYGLKQGGRNWNKNLDDFLVGIGLDRSTIDSCLYFSRDEGGETNLLVAVYVDDLV-IAGHREKVDEFKHNINLRFRMKDLGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPELADKPSEPKSPGVVLGMVGSLTYAWTGTRPDIAYAIHQAARRMEDPCREDFSTCKRILRYLSTVQDLGITFD--GKSDDHGLEEFVDAD*AEDVEDRKSTTRYVFKLNDGAIRWCSRKQQLVTWSSTEAEYVAAGEARKDTVYLRELLESIG 870
            ++KS+YGLKQ  R WNK    F++ +G  +S+ D C++    +  E   ++AVYVDDL+ I    E +DE K  +  R++MKDLG LS +LGI V  D+    I + Q  YI  +LK+YG D+   V TP +  VK+   +  D  S P  P     MVGSL YA   TRPDIA A+   ++   +P     +  KRILRYL    +L + FD  G  D  G   F DAD A D++DR STT  +F L+ GA+ W S+KQ  V  S+ EAEYVA  +A ++  +LR LL  +G
Sbjct:    3 IKKSIYGLKQSPRCWNKEFTTFMMDLGFKQSSSDPCVFVRLSQELE---IIAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKL---KKDDGVSNPVDPSTYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGNKDLIG---FSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLG 286          
BLAST of mRNA_H-paniculata_contig48519.11970.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR)

HSP 1 Score: 213 bits (541), Expect = 8.480e-59
Identity = 131/299 (43.81%), Postives = 171/299 (57.19%), Query Frame = 1
Query:    1 LRKSLYGLKQGGRNWNKNLDDFLVGIGLDRSTIDSCLYFSRDEGGETNLLVAVYVDDLVIAG-HREKVDEFKHNINLRFRMKDLGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPE------LADKPSEPKSPGVVLGMVGSLTYAWTGTRPDIAYAIHQAARRMEDPCREDFSTCKRILRYLSTVQDLGITFDGK--SDDHGLEEFVDAD*AEDVEDRKSTTRYVFKLNDGAIRWCSRKQQLVTWSSTEAEYVAAGEARKDTVYLRELLESIG 870
            L+KSLYGLKQ GR WNK  D  L  +G  R   ++CLY  R EGG+   LV VYVDDL++A   R  +DE K  +   F+M+DLG  S VLGI++R DR    I +SQ  YI  VLKR G ++C+ V TP+  + +++A +      L +     K+      +VGSL YA  GTRPDIAYA     R   +P R  +   KR+LRYL   +DL + FDG   S D     + DAD + D E  KST+ YVF  + GAI W S++Q LV  SSTE+EYV    A +   +LR   E IG
Sbjct: 1146 LKKSLYGLKQAGRTWNKTFDSSLKDLGFTRLDAETCLYVMRGEGGKLCFLV-VYVDDLILAATSRAYMDEIKTKLAATFKMRDLGPASYVLGIQIRRDRRKRIIGLSQRQYIDTVLKRCGMEDCKPVFTPLSTQNRLTADDPINNDTLTEMTINNKTVSYAT-VVGSLMYAMMGTRPDIAYATGLLGRFSTNPKRCHWEAAKRVLRYLKGTRDLELQFDGNDVSMDMSFHGYSDADWSGDPETSKSTSGYVFLSSRGAIGWASKRQSLVALSSTESEYVGLCTAGQHLAWLRNFFEDIG 1442          
BLAST of mRNA_H-paniculata_contig48519.11970.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 211 bits (538), Expect = 2.130e-58
Identity = 127/302 (42.05%), Postives = 172/302 (56.95%), Query Frame = 1
Query:    1 LRKSLYGLKQGGRNWNKNLDDFLVGIGLDRSTIDSCLYFSRDEGGETNLLVAVYVDDLVIAG-HREKVDEFKHNINLRFRMKDLGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPELADKPS------EPKSPGVVLGMVGSLTYAWTGTRPDIAYAIHQAARRMEDPCREDFSTCKRILRYLSTVQDLGITFDGKS-----DDHGLEEFVDAD*AEDVEDRKSTTRYVFKLNDGAIRWCSRKQQLVTWSSTEAEYVAAGEARKDTVYLRELLESIG 870
            L++SLYGLKQ GR WNK LD  L G+G +R   ++CLY  RD+ G+   LV VYVDDL++A   R  +DE K  +  +F+M+DLG  S +LGI +R DRP   I +SQ  YI  VL RYG  +C+   TP+   VK SA +  D  +      E +S      ++GS+ YA  GTRPDIAY +    R   +P R  +   KR LRYL   +D+ + FDG       D HG   + DAD + D +  +ST+ +VF  N GAI W S++Q LV  SSTE+EY+    A +   +LR     IG
Sbjct: 1126 LKRSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFLV-VYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYA-SVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKRCHWEMAKRGLRYLKATRDMELRFDGSDVAGDMDFHG---YSDADWSGDRDTSRSTSGFVFISNRGAIGWSSKRQSLVALSSTESEYIGLSNAGQHLAWLRTFFSEIG 1422          
BLAST of mRNA_H-paniculata_contig48519.11970.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 209 bits (531), Expect = 1.800e-57
Identity = 120/295 (40.68%), Postives = 174/295 (58.98%), Query Frame = 1
Query:    1 LRKSLYGLKQGGRNWNKNLDDFLVGIGLDRSTIDSCLYFSRDEGGETNLLVAVYVDDLVIAGHR-EKVDEFKHNINLRFRMKDLGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISA----PELADKPSEPKSPGVVLGMVGSLTYAWTGTRPDIAYAIHQAARRMEDPCREDFSTCKRILRYLSTVQDLGITFDGKSDDHGLEEFVDAD*AEDVEDRKSTTRYVFKLNDGAIRWCSRKQQLVTWSSTEAEYVAAGEARKDTVYLRELLESIG 870
            L+KSLYGLKQ  R WNK  + F+ G    RS  DSC+Y  + EGG   LL+  YVDD++IA     ++D  K  ++  F MKD+G+ SR+LGI+++ DR  G + +SQ SY+ +V+KR+   E + V TP+ G  K+SA     E  D    P S       VGS+ YA  GTRPDIAYAI   +R M  P    +   K +LRY+    DL + F  K+ +  ++ + D+D A D++ R+ST+ YVF +    + W S  Q +VT S+TEAEYV+  EA K+ ++++ LL  +G
Sbjct:  985 LKKSLYGLKQSPRLWNKKFNQFITGEKFIRSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKYPYS-----SAVGSVMYAMIGTRPDIAYAIGLISRFMSKPGIMHWEAVKWLLRYIRGTADLNLVFT-KNKNFSVQGYCDSDFAGDLDRRRSTSGYVFTVGGNTVSWKSNLQPVVTLSTTEAEYVSLTEAVKEAIWIKGLLRDMG 1271          
BLAST of mRNA_H-paniculata_contig48519.11970.1 vs. uniprot
Match: A0A2N9HGZ8_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HGZ8_FAGSY)

HSP 1 Score: 198 bits (503), Expect = 5.800e-57
Identity = 111/292 (38.01%), Postives = 174/292 (59.59%), Query Frame = 1
Query:    1 LRKSLYGLKQGGRNWNKNLDDFLVGIGLDRSTIDSCLYFSRDEGGETNLLVAVYVDDLVIAGHRE-KVDEFKHNINLRFRMKDLGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPELADKPSEPKSPGVV--LGMVGSLTYAWTGTRPDIAYAIHQAARRMEDPCREDFSTCKRILRYLSTVQDLGITFDGKSDDHGLEEFVDAD*AEDVEDRKSTTRYVFKLNDGAIRWCSRKQQLVTWSSTEAEYVAAGEARKDTVYLRELLESI 867
            L+KSLYGLKQ  R W K  D +++ IG  R   D C+Y    E G + + + +YVDD++IA     +V+  K  ++  F MKDLG+  ++LG+E+R DR    + +SQ +YIR+VL+++   + + V TP+    ++S+ +  +   E ++   V     VG L Y    TRPD+A+A+   +R M +P RE ++  K I RYL    + GI F  +   + +  +VDAD A +V+DR+STT YVF L+ G I W S  Q +VT S+TEAEY+AA E  K+ ++L+ L++ +
Sbjct:   87 LKKSLYGLKQSPRQWYKRFDSYMIPIGYTRCEYDCCVYVRILEDG-SYIFLLLYVDDMLIAAKSMCEVNRLKSLLHKEFEMKDLGATKKILGMEIRRDREARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFRLSSSQCPNNEEEIENMSKVPYASAVGCLMYEMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVTMSTTEAEYMAAAETAKEALWLKGLVKEL 377          
BLAST of mRNA_H-paniculata_contig48519.11970.1 vs. uniprot
Match: A5BHI5_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BHI5_VITVI)

HSP 1 Score: 207 bits (526), Expect = 7.420e-57
Identity = 120/294 (40.82%), Postives = 175/294 (59.52%), Query Frame = 1
Query:    1 LRKSLYGLKQGGRNWNKNLDDFLVGIGLDRSTIDSCLYFSRDEGGETNLLVAVYVDDLVIAGHR-EKVDEFKHNINLRFRMKDLGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPELADKPSEPK---SPGVVLGMVGSLTYAWTGTRPDIAYAIHQAARRMEDPCREDFSTCKRILRYLSTVQDLGITFDGKSDDHGLEEFVDAD*AEDVEDRKSTTRYVFKLNDGAIRWCSRKQQLVTWSSTEAEYVAAGEARKDTVYLRELLESIG 870
            LRKSLYGLKQ  R W K  D+F+  IG  R   D C YF   +   + +++ +YVDD++IAG   EK++  K  ++ +F MKDLG+  ++LG+ +  ++ NGT+ +SQ  Y+++VL R+  +E + V TP+    K+S  E + K  E +   S       +GSL YA   TRPDIA+A+   +  M  P ++ +   K ILRYL    D  + F G S    L+ +VD D A D++ RKSTT +VF L   AI W S  Q++VT S+TEAEYVAA EARK+ ++L   L+ +G
Sbjct:  776 LRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYFKSFDN--SYIILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRNKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSK-EQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSIFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGAS--LKLQGYVDVDFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEARKEMIWLHGFLDELG 1064          
BLAST of mRNA_H-paniculata_contig48519.11970.1 vs. uniprot
Match: A0A1J6IUK8_NICAT (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IUK8_NICAT)

HSP 1 Score: 195 bits (495), Expect = 7.430e-57
Identity = 123/290 (42.41%), Postives = 165/290 (56.90%), Query Frame = 1
Query:    1 LRKSLYGLKQGGRNWNKNLDDFLVGIGLDRSTIDSCLYFSRDEGGETNLLVAVYVDDLVIAGHREKV-DEFKHNINLRFRMKDLGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPELADKPSEPKSPGVVLGMVGSLTYAWTGTRPDIAYAIHQAARRMEDPCREDFSTCKRILRYLSTVQDLGITFDGKSDDHGLEEFVDAD*AEDVEDRKSTTRYVFKLNDGAIRWCSRKQQLVTWSSTEAEYVAAGEARKDTVYLRELLESI 867
            L+K+LYGLKQ  R WN  +D +    G  +   +  LY    + G+  LLV +YVDDL+  G+  K+ +EFK  +   F M D+G +S  LGI+V+  R +G I ISQG Y +E+LK++  D C  V TPVE  VKIS  +  D   E  +P     +VGSL Y  T TRPDI Y +   +R ME P        KRILRY+    D GI +   S D     + D+D A D++DRKSTT +VF L + A  W S+KQ +VT S+ EAEYVAA       ++LR LLE +
Sbjct:   36 LKKALYGLKQAPRAWNSRIDKYFQANGFSKCPHEHALYVKIAKNGDI-LLVCLYVDDLIFTGNNPKMFEEFKEAMAREFEMTDIGLMSYYLGIQVQ-QRKDG-IFISQGEYAKEILKKFEMDNCNPVSTPVECGVKIS--KHGD--GENVNPTFFKSLVGSLRYL-TCTRPDILYGVGLVSRFMEAPTTSHLKVAKRILRYIKDTLDYGILY-SSSKDSKFVGYCDSDWAGDIDDRKSTTGFVFFLGNSAFTWNSKKQPIVTLSTCEAEYVAACSCVCHAIWLRSLLEEL 316          
BLAST of mRNA_H-paniculata_contig48519.11970.1 vs. uniprot
Match: A0A6A3PPW4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PPW4_9STRA)

HSP 1 Score: 200 bits (509), Expect = 7.460e-57
Identity = 119/291 (40.89%), Postives = 173/291 (59.45%), Query Frame = 1
Query:    7 KSLYGLKQGGRNWNKNLDDFLVGIGLDRSTIDSCLYFSRDEGGETNLLVAVYVDDLVIAGHREKVDE-FKHNINLRFRMKDLGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISAPELADKPSEPKSPGVVLGMVGSLTYAWTGTRPDIAYAIHQAARRMEDPCREDFSTCKRILRYLSTVQDLGITFDGK---SDDHGLEEFVDAD*AEDVEDRKSTTRYVFKLNDGAIRWCSRKQQLVTWSSTEAEYVAAGEARKDTVYLRELLESI 867
            K+LYGL+Q GR WN  L+ +L   G  RS  + CLY+  +E  ET + V VYVDD+++A + E+  E    ++N  + +KD G L++ LG+EV  ++  G ITI QG Y RE+L ++G++E   V  P+E   ++ AP   D+ +E   P      VG L Y  T TRPD+A+A+ Q +R + +P  +     KR+LRY++   D GIT+  K   + D  LE F D+D A D E RKSTT +VF L  GA+ W SR+Q ++  S+ EAEYVAA EA  + V    +L+ I
Sbjct:  169 KALYGLRQSGREWNSELNQWLTDRGYQRSLTEPCLYYRFEE--ETIVYVLVYVDDILVATNNEQYKEKLFEDLNKAYGIKDQGLLTQYLGVEV--EQTPGRITIRQGKYAREILAKFGYEEAHAVGNPMEVNARL-APIEEDEKAETSFP--YREAVGMLMYLATSTRPDLAFALGQLSRFVANPLPKHVGALKRVLRYVAGTLDYGITYSRKQTEAKDVVLEGFCDSDWANDPEQRKSTTGFVFTLAGGALAWMSRRQSIIALSTAEAEYVAACEASMEAVAESNILQEI 452          
BLAST of mRNA_H-paniculata_contig48519.11970.1 vs. uniprot
Match: A0A6D2KZJ0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KZJ0_9BRAS)

HSP 1 Score: 197 bits (501), Expect = 7.830e-57
Identity = 116/295 (39.32%), Postives = 173/295 (58.64%), Query Frame = 1
Query:    1 LRKSLYGLKQGGRNWNKNLDDFLVGIGLDRSTIDSCLYFSRDEGGETNLLVAVYVDDLVIAGHR-EKVDEFKHNINLRFRMKDLGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTPVEGKVKISA----PELADKPSEPKSPGVVLGMVGSLTYAWTGTRPDIAYAIHQAARRMEDPCREDFSTCKRILRYLSTVQDLGITFDGKSDDHGLEEFVDAD*AEDVEDRKSTTRYVFKLNDGAIRWCSRKQQLVTWSSTEAEYVAAGEARKDTVYLRELLESIG 870
            L+KSLYGLKQ  R WNK  + F++G    RS  DSC+Y  + E G   LL+  YVDD+++A     ++ + K  ++  F MKD+G  SR+LGI++R DR  G + +SQ SY+ +V++++   E + V TP+ G  K+SA     E  D    P S      +VGS+ YA  GTRPDIAYAI   +  M  P    +   K +LRY+    DL + F  K+ +  ++ + D+D A D + RKST+ YVF +    I W S  Q +VT S+ EAEY+A  EA K+ ++++ LL+++G
Sbjct:   49 LKKSLYGLKQSPRLWNKKFNQFIIGEKFVRSHQDSCVYVKKVESGYMYLLL--YVDDILMAAKDIAEIVKLKSALSSEFEMKDMGPASRILGIDIRRDREAGVLYLSQASYLEKVVQKFKMKEAKSVNTPMGGHFKLSAVTEDSECIDTEKYPYS-----SVVGSIMYAMIGTRPDIAYAIGLVSMFMSKPGMMHWEAVKWLLRYIKGSSDLEVVFT-KNKNFNIQGYCDSDFAGDRDKRKSTSGYVFTVGGNTISWRSNLQPVVTLSTIEAEYIALTEAVKEAIWIKGLLKNMG 335          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48519.11970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z7AL20_9LAMI1.020e-6239.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0S7JP25_9TELE9.090e-6041.30POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A409WVI7_9AGAR8.480e-5943.81Integrase catalytic domain-containing protein (Fra... [more]
A0A1M2VT18_TRAPU2.130e-5842.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3F7G4_NOCCA1.800e-5740.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9HGZ8_FAGSY5.800e-5738.01Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5BHI5_VITVI7.420e-5740.82Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A1J6IUK8_NICAT7.430e-5742.41Retrovirus-related pol polyprotein from transposon... [more]
A0A6A3PPW4_9STRA7.460e-5740.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2KZJ0_9BRAS7.830e-5739.32Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48519contigH-paniculata_contig48519:295..1227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue4.9e-17
Seed eggNOG ortholog164328.Phyra86207
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3Q8Z1@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size870
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48519.11970.1prot_H-paniculata_contig48519.11970.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48519 481..990 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930436.2314079-UTR-H-paniculata_contig48519:294..4801622930436.2314079-UTR-H-paniculata_contig48519:294..480Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48519 295..480 -
1691481291.479202-UTR-H-paniculata_contig48519:294..4801691481291.479202-UTR-H-paniculata_contig48519:294..480Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48519 295..480 -
1622930436.2749312-UTR-H-paniculata_contig48519:990..12271622930436.2749312-UTR-H-paniculata_contig48519:990..1227Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48519 991..1227 -
1691481291.5105376-UTR-H-paniculata_contig48519:990..12271691481291.5105376-UTR-H-paniculata_contig48519:990..1227Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48519 991..1227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930436.2445302-CDS-H-paniculata_contig48519:480..7001622930436.2445302-CDS-H-paniculata_contig48519:480..700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48519 481..700 -
1691481291.4933126-CDS-H-paniculata_contig48519:480..7001691481291.4933126-CDS-H-paniculata_contig48519:480..700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48519 481..700 -
1622930436.2585268-CDS-H-paniculata_contig48519:763..9901622930436.2585268-CDS-H-paniculata_contig48519:763..990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48519 764..990 -
1691481291.501976-CDS-H-paniculata_contig48519:763..9901691481291.501976-CDS-H-paniculata_contig48519:763..990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48519 764..990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48519.11970.1

>prot_H-paniculata_contig48519.11970.1 ID=prot_H-paniculata_contig48519.11970.1|Name=mRNA_H-paniculata_contig48519.11970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MKDLGSLSRVLGIEVRCDRPNGTITISQGSYIREVLKRYGFDECRGVPTP
VEGKVKISAPELADKPSEPKSPGVVLGMVGSLTYAWTGTRPDIAYAIHQA
ARRMEDPCREDFSTCKRILRYLSTVQDLGITFDGKSDDHGLEEFVDAD*
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mRNA from alignment at H-paniculata_contig48519:295..1227-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48519.11970.1 ID=mRNA_H-paniculata_contig48519.11970.1|Name=mRNA_H-paniculata_contig48519.11970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=933bp|location=Sequence derived from alignment at H-paniculata_contig48519:295..1227- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCGTAAAAGCCTGTACGGCCTCAAGCAGGGCGGCCGAAACTGGAATAA AAATCTTGACGATTTTCTTGTTGGGATAGGACTCGACCGTTCCACTATCG ACTCATGCCTGTACTTTTCCCGCGACGAAGGGGGAGAGACAAACCTTCTG GTGGCTGTGTATGTTGACGACCTGGTCATTGCTGGTCATCGTGAGAAAGT AGACGAGTTCAAGCATAACATAAATCTGCGTTTTAGGATGAAAGACTTGG GCTCTCTCTCGCGCGTATTGGGAATAGAAGTACGATGTGACCGCCCTAAT GGTACCATAACCATCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAAAG ATACGGTTTTGACGAGTGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAG TGAAGATTTCGGCACCGGAGTTGGCCGACAAACCCTCCGAACCGAAGTCA CCTGGAGTTGTACTGTGGGACATAGGCGCAGGAGTACAAAGCAGCAGAGG GAAAAATGGCAATTCAACTGAATACAGAGGCATGGTAGGATCACTCACGT ACGCCTGGACAGGAACTAGACCTGATATAGCGTACGCGATACACCAAGCA GCACGTCGTATGGAGGACCCATGTCGAGAAGACTTCAGTACATGCAAGCG CATTTTACGTTATCTCAGTACTGTGCAAGACCTCGGCATTACGTTCGACG GTAAGAGTGATGATCACGGTCTGGAAGAATTCGTTGATGCCGATTAGGCG GAAGATGTCGAGGACCGAAAGTCCACAACGAGATACGTTTTTAAACTAAA CGATGGTGCGATACGTTGGTGCTCCAGGAAGCAACAGTTAGTCACGTGGT CCAGTACAGAGGCAGAATACGTTGCTGCAGGAGAAGCGAGAAAGGACACG GTATACCTTAGGGAGTTACTAGAATCGATAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig48519:295..1227-

>mRNA_H-paniculata_contig48519.11970.1 ID=mRNA_H-paniculata_contig48519.11970.1|Name=mRNA_H-paniculata_contig48519.11970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig48519:295..1227- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGACTTGGGCTCTCTCTCGCGCGTATTGGGAATAGAAGTACGATG
TGACCGCCCTAATGGTACCATAACCATCTCGCAGGGTAGCTACATCCGCG
AGGTACTAAAAAGATACGGTTTTGACGAGTGTCGAGGAGTACCCACCCCT
GTAGAGGGAAAAGTGAAGATTTCGGCACCGGAGTTGGCCGACAAACCCTC
CGAACCGAAGTCACCTGGAGTTGTACTATGAAAGACTTGGGCTCTCTCTC
GCGCGTATTGGGAATAGAAGTACGATGTGACCGCCCTAATGGTACCATAA
CCATCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAAAGATACGGTTTT
GACGAGTGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTGAAGATTTC
GGCACCGGAGTTGGCCGACAAACCCTCCGAACCGAAGTCACCTGGAGTTG
TACTAGGCATGGTAGGATCACTCACGTACGCCTGGACAGGAACTAGACCT
GATATAGCGTACGCGATACACCAAGCAGCACGTCGTATGGAGGACCCATG
TCGAGAAGACTTCAGTACATGCAAGCGCATTTTACGTTATCTCAGTACTG
TGCAAGACCTCGGCATTACGTTCGACGGTAAGAGTGATGATCACGGTCTG
GAAGAATTCGTTGATGCCGATTAGAGGCATGGTAGGATCACTCACGTACG
CCTGGACAGGAACTAGACCTGATATAGCGTACGCGATACACCAAGCAGCA
CGTCGTATGGAGGACCCATGTCGAGAAGACTTCAGTACATGCAAGCGCAT
TTTACGTTATCTCAGTACTGTGCAAGACCTCGGCATTACGTTCGACGGTA
AGAGTGATGATCACGGTCTGGAAGAATTCGTTGATGCCGATTAG
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