mRNA_H-paniculata_contig4846.11963.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4846.11963.1
Unique NamemRNA_H-paniculata_contig4846.11963.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4846.11963.1 vs. uniprot
Match: D7FVT9_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVT9_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.440e-29
Identity = 74/141 (52.48%), Postives = 90/141 (63.83%), Query Frame = 1 
Query:  892 DEKEQVTQESGHSEQPETSDDKASAEVAAGEVGGXXXXXXXXXXDAAESMAMNPVTIRVDNFVRPFTHPMCTTLLEDKAGAPLLENGFWMDAIKTHCYATFAGEEAAKRAIAGLQGLQWPDRSSKRLEAKVADVSAEEVRA 1314
            DE+EQ    S       ++ + AS   AA E  G             + +  +PVTIRVDNFVRPFT      LLE+KA AP++E GFWMD IKTHCYATF G+EAA+RA+A LQGLQWP +S KRLEA + D+SAEE RA
Sbjct:  312 DEEEQAAPSSEPGRADASAPETAST-TAAAEXXGDQSAPGDGVEGEGDEVVADPVTIRVDNFVRPFTAQQAKKLLEEKAEAPVMEGGFWMDGIKTHCYATFDGKEAAERAMAALQGLQWPAQSFKRLEATLGDMSAEEARA 451
[Close]
BLAST of mRNA_H-paniculata_contig4846.11963.1 vs. uniprot
Match: A0A6H5JTQ3_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ3_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 8.040e-24
Identity = 65/131 (49.62%), Postives = 78/131 (59.54%), Query Frame = 1 
Query: 1033 ESMAMNPVTIRVDNFVRPFTH-------------------------------------PMCTTLLEDKAGAPLLENGFWMDAIKTHCYATFAGEEAAKRAIAGLQGLQWPDRSSKRLEAKVADVSAEEVRA 1314
            +++  +PVTIRVDNFVRPFT                                      P    LLE+KA AP+LE GFWMD+IKTHCYATF G+EAA+RA+A LQGLQWP +S KRLEA + D+SAEE RA
Sbjct:  357 DAVVADPVTIRVDNFVRPFTAQQAKKVGGNASTEDDPTYPSPVFFCCASCLVFVDTPTPKPQQLLEEKAEAPVLEGGFWMDSIKTHCYATFDGKEAAERAMAALQGLQWPAQSFKRLEATMGDMSAEEARA 487
[Close]
BLAST of mRNA_H-paniculata_contig4846.11963.1 vs. uniprot
Match: W2LHP1_PHYPR (SAP domain-containing protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LHP1_PHYPR)

HSP 1 Score: 83.6 bits (205), Expect = 2.610e-14
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 1 
Query: 1057 TIRVDNFVRPFTHPMCTTLLEDKAGAPLLENGFWMDAIKTHCYATFAGEEAAKRAIAGLQGLQWPDRSSKRLEAKVADVSAEEVRA 1314
            T+R+DNFVRPFT     TL+++      +E+GFWMDAIKTHC+ T+   E A++  A L G  WP  + + L  K+AD +A EVRA
Sbjct:  174 TLRIDNFVRPFTLNAVKTLVQELGN--FVEDGFWMDAIKTHCFVTYPTSEIAEKTSAALNGKVWPPENGRSLSVKLADHTAMEVRA 257
[Close]
BLAST of mRNA_H-paniculata_contig4846.11963.1 vs. uniprot
Match: D0NGE4_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NGE4_PHYIT)

HSP 1 Score: 81.3 bits (199), Expect = 1.360e-13
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 1 
Query: 1024 DAAESMAMNPVTIRVDNFVRPFTHPMCTTLLEDKAGAPLLENGFWMDAIKTHCYATFAGEEAAKRAIAGLQGLQWPDRSSKRLEAKVADVSAEEV 1308
            DA  +   +  T+R+DNF+RPFT      L+++      +E+GFWMDAIKTHC+ T+   E AK+  A L G  WP  + + L  K AD SA EV
Sbjct:  152 DAEATEEEHRTTLRIDNFIRPFTLNAVKALVQELGN--YVEDGFWMDAIKTHCFVTYPTSEIAKKTSAALNGKVWPPENGRSLRVKFADHSAMEV 244
[Close]
BLAST of mRNA_H-paniculata_contig4846.11963.1 vs. uniprot
Match: W2LJM4_PHYPR (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LJM4_PHYPR)

HSP 1 Score: 80.9 bits (198), Expect = 1.430e-13
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1 
Query: 1057 TIRVDNFVRPFTHPMCTTLLEDKAGAPLLENGFWMDAIKTHCYATFAGEEAAKRAIAGLQGLQWPDRSSKRLEAKVADVSAEEV 1308
            T+R+DNFVRPFT     TL+++      +E+GFWMDAIKTHC+ T+   E A++  A L G  WP  + + L  K+AD +A EV
Sbjct:  141 TLRIDNFVRPFTLNAVKTLVQELGN--FVEDGFWMDAIKTHCFVTYPTSEIAEKTSAALNGKVWPPENGRSLSVKLADHTAMEV 222
[Close]
BLAST of mRNA_H-paniculata_contig4846.11963.1 vs. uniprot
Match: W2XC22_PHYPR (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2XC22_PHYPR)

HSP 1 Score: 80.9 bits (198), Expect = 1.430e-13
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1 
Query: 1057 TIRVDNFVRPFTHPMCTTLLEDKAGAPLLENGFWMDAIKTHCYATFAGEEAAKRAIAGLQGLQWPDRSSKRLEAKVADVSAEEV 1308
            T+R+DNFVRPFT     TL+++      +E+GFWMDAIKTHC+ T+   E A++  A L G  WP  + + L  K+AD +A EV
Sbjct:  141 TLRIDNFVRPFTLNAVKTLVQELGN--FVEDGFWMDAIKTHCFVTYPTSEIAEKTSAALNGKVWPPENGRSLSVKLADHTAMEV 222
[Close]
BLAST of mRNA_H-paniculata_contig4846.11963.1 vs. uniprot
Match: V9FHA7_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9FHA7_PHYPR)

HSP 1 Score: 80.9 bits (198), Expect = 1.430e-13
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1 
Query: 1057 TIRVDNFVRPFTHPMCTTLLEDKAGAPLLENGFWMDAIKTHCYATFAGEEAAKRAIAGLQGLQWPDRSSKRLEAKVADVSAEEV 1308
            T+R+DNFVRPFT     TL+++      +E+GFWMDAIKTHC+ T+   E A++  A L G  WP  + + L  K+AD +A EV
Sbjct:  141 TLRIDNFVRPFTLNAVKTLVQELGN--FVEDGFWMDAIKTHCFVTYPTSEIAEKTSAALNGKVWPPENGRSLSVKLADHTAMEV 222
[Close]
BLAST of mRNA_H-paniculata_contig4846.11963.1 vs. uniprot
Match: A0A225WZM4_9STRA (SAP domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZM4_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.060e-13
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1 
Query: 1057 TIRVDNFVRPFTHPMCTTLLEDKAGAPLLENGFWMDAIKTHCYATFAGEEAAKRAIAGLQGLQWPDRSSKRLEAKVADVSAEEV 1308
            T+R+DNFVRPFT      L+++      +E+GFWMD IKTHCY T++  E AK+  + L G  WP  + + L  K AD +A EV
Sbjct:  142 TLRIDNFVRPFTLNAVKALVQELGN--FVEDGFWMDVIKTHCYVTYSSPEVAKKTSSALDGKVWPPENGRALSVKFADHTAMEV 223
[Close]
BLAST of mRNA_H-paniculata_contig4846.11963.1 vs. uniprot
Match: W2NND7_PHYPR (SAP domain-containing protein n=10 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NND7_PHYPR)

HSP 1 Score: 80.9 bits (198), Expect = 4.040e-13
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1 
Query: 1057 TIRVDNFVRPFTHPMCTTLLEDKAGAPLLENGFWMDAIKTHCYATFAGEEAAKRAIAGLQGLQWPDRSSKRLEAKVADVSAEEV 1308
            T+R+DNFVRPFT     TL+++      +E+GFWMDAIKTHC+ T+   E A++  A L G  WP  + + L  K+AD +A EV
Sbjct:  174 TLRIDNFVRPFTLNAVKTLVQELGN--FVEDGFWMDAIKTHCFVTYPTSEIAEKTSAALNGKVWPPENGRSLSVKLADHTAMEV 255
[Close]
BLAST of mRNA_H-paniculata_contig4846.11963.1 vs. uniprot
Match: V9FJ89_PHYPR (SAP domain-containing protein n=12 Tax=Phytophthora parasitica TaxID=4792 RepID=V9FJ89_PHYPR)

HSP 1 Score: 80.9 bits (198), Expect = 4.040e-13
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1 
Query: 1057 TIRVDNFVRPFTHPMCTTLLEDKAGAPLLENGFWMDAIKTHCYATFAGEEAAKRAIAGLQGLQWPDRSSKRLEAKVADVSAEEV 1308
            T+R+DNFVRPFT     TL+++      +E+GFWMDAIKTHC+ T+   E A++  A L G  WP  + + L  K+AD +A EV
Sbjct:  174 TLRIDNFVRPFTLNAVKTLVQELGN--FVEDGFWMDAIKTHCFVTYPTSEIAEKTSAALNGKVWPPENGRSLSVKLADHTAMEV 255
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4846.11963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT9_ECTSI1.440e-2952.48SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JTQ3_9PHAE8.040e-2449.62SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
W2LHP1_PHYPR2.610e-1447.67SAP domain-containing protein n=6 Tax=Phytophthora... [more]
D0NGE4_PHYIT1.360e-1343.16Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
W2LJM4_PHYPR1.430e-1346.43Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
W2XC22_PHYPR1.430e-1346.43Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
V9FHA7_PHYPR1.430e-1346.43Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A225WZM4_9STRA3.060e-1345.24SAP domain-containing protein n=1 Tax=Phytophthora... [more]
W2NND7_PHYPR4.040e-1346.43SAP domain-containing protein n=10 Tax=Phytophthor... [more]
V9FJ89_PHYPR4.040e-1346.43SAP domain-containing protein n=12 Tax=Phytophthor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4846contigH-paniculata_contig4846:146..3453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog2880.D7FVT9
Preferred nameACIN1
KEGG koko:K01278,ko:K12875,ko:K13781,ko:K15559,ko:K16519,ko:K18732
KEGG TC2.A.3.8.6
KEGG Pathwayko03013,ko03015,ko03040,ko04974,map03013,map03015,map03040,map04974
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000335,GO:0000337,GO:0000375,GO:0000377,GO:0000398,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002761,GO:0002763,GO:0003006,GO:0003674,GO:0003676,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006323,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006996,GO:0007275,GO:0007548,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0008406,GO:0009653,GO:0009887,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010528,GO:0010529,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012501,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019899,GO:0022411,GO:0022414,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030261,GO:0030262,GO:0030263,GO:0030334,GO:0031323,GO:0031324,GO:0031329,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033119,GO:0034101,GO:0034641,GO:0035262,GO:0040012,GO:0042592,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045137,GO:0045595,GO:0045597,GO:0045637,GO:0045639,GO:0045655,GO:0045657,GO:0045910,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050684,GO:0050686,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051270,GO:0051276,GO:0060255,GO:0061458,GO:0061574,GO:0065007,GO:0065008,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097194,GO:1901360,GO:1901363,GO:1902105,GO:1902107,GO:1903311,GO:1903312,GO:1903706,GO:1903708,GO:2000026,GO:2000145
EggNOG free text desc.apoptotic chromosome condensation
EggNOG OGsKOG2416@1,KOG2416@2759
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-01_002110.1
EC3.4.14.5
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03019,ko03021,ko03041,ko04090,ko04147
Exons4
Model size1314
Cds size1314
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4846.11963.1prot_H-paniculata_contig4846.11963.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4846 146..3453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.7032533-CDS-H-paniculata_contig4846:145..3491622930434.7032533-CDS-H-paniculata_contig4846:145..349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 146..349 -
1691481290.7399447-CDS-H-paniculata_contig4846:145..3491691481290.7399447-CDS-H-paniculata_contig4846:145..349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 146..349 -
1622930434.715945-CDS-H-paniculata_contig4846:1579..17041622930434.715945-CDS-H-paniculata_contig4846:1579..1704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 1580..1704 -
1691481290.7613266-CDS-H-paniculata_contig4846:1579..17041691481290.7613266-CDS-H-paniculata_contig4846:1579..1704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 1580..1704 -
1622930434.7273254-CDS-H-paniculata_contig4846:1740..25701622930434.7273254-CDS-H-paniculata_contig4846:1740..2570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 1741..2570 -
1691481290.7716508-CDS-H-paniculata_contig4846:1740..25701691481290.7716508-CDS-H-paniculata_contig4846:1740..2570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 1741..2570 -
1622930434.7389495-CDS-H-paniculata_contig4846:3298..34531622930434.7389495-CDS-H-paniculata_contig4846:3298..3453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 3299..3453 -
1691481290.78097-CDS-H-paniculata_contig4846:3298..34531691481290.78097-CDS-H-paniculata_contig4846:3298..3453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4846 3299..3453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4846.11963.1

>prot_H-paniculata_contig4846.11963.1 ID=prot_H-paniculata_contig4846.11963.1|Name=mRNA_H-paniculata_contig4846.11963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=438bp
MADYTVASDYTVEDVRGLTVPKLKAELARLNQPLAGLKLKAQFADALTVS
SLSQQQHQQREGKDVDPASSIPHAASSAETDNTPAAAEEAEAGDDATAEP
QAEVQQPTDTDQQQTPPNQVASATGEDDQEDEEFGEEAVPADAAPMEVDG
EDPPASADAEMSAQQQQQQGPEAETAPKSSSTKAKSSGRKSRKRSSKAVG
VGVGDGGDGGEHAENAVSGDGAETRTPRKSKRSRRSSSGAVTPAAVAGTG
DGDGETPQNPLVAKKDKMEEDQDDGSTQETDAAAAATAAASCSTSNGDEK
EQVTQESGHSEQPETSDDKASAEVAAGEVGGEGGGGGDGEGDAAESMAMN
PVTIRVDNFVRPFTHPMCTTLLEDKAGAPLLENGFWMDAIKTHCYATFAG
EEAAKRAIAGLQGLQWPDRSSKRLEAKVADVSAEEVRA
back to top

mRNA from alignment at H-paniculata_contig4846:146..3453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4846.11963.1 ID=mRNA_H-paniculata_contig4846.11963.1|Name=mRNA_H-paniculata_contig4846.11963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3308bp|location=Sequence derived from alignment at H-paniculata_contig4846:146..3453- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGACTATACGGTAGCCAGCGATTATACCGTGGAAGATGTGAGGGG
ACTTACTGTGCCCAAGCTTAAGGCGGAGCTAGCCAGGCTGAATCAGCCTT
TGGCTGGTCTCAAGCTTAAGGCCCAGTTTGCCGACGCCCTCACGGTGAGT
TCCTTGTCAGAGTTGGCACCGAAGGAAATACAGGCGAAAGGTGGACCAGG
CACGGCGTAGACAACGAACCAGCAGTAGCATACTGAGACCGACATACCAG
TACGATATATGTGTACACACGACCTATTAGGAAGAGCTCTTTTTGCACAT
AAGATTTTCTCCTTACTGTACCATGTTTCCCTTGCCTACTATGTGCGCCC
CACACACCCTTAGTTGTGTGGTCGATTTGCGGCAAATTCCACTCGAGCAG
GTGTCGGTGGTTGGTACACTGGCTTTCAAGGTGTACCACAAGCAAGTGCA
GTTAGTCAGCTTTTGCAACACTACAACCTCAAACAGTCGGTTCAGATAAA
ATCACTGAAGTTGTTTCACATTGCACCAAATACACCACAGAAGACAAACA
ACATATCACCCCCTACATCACTGTGTCCGTACGTTGCCACTCCAGACCCG
GCGTTATCCGCGTGCGATTGGCCAACTCAGTACTTGCACGTGGTAAATCT
TCTTGCATCGCTTCGAACCCGAGCCATAACCGTACCCATCGATCGCTGTA
ACATATTGCCTCCCCTATTTGCACATAATAACGCATCTGTCACTTTCCGC
ACGCGTTATCAAACTATTGTTGTACTGGCGGTAACTTTAAGGCCTATATC
GAGCAACAAGCCCAGCCGTCATCTTCGCCGACGAATGACGCAGCTGACGG
CGATAACGGCGACAAGAACGCCCCAAAGGCCAGATCACAGCAACAGCACC
AACAGCGAGAAGGAAAGGACGTCGACCCCGCTAGCAGCATACCCCATGCT
GCAAGCTCTGCTGAAACGGACAACACACCGGCAGCAGCAGAAGAAGCTGA
AGCTGGCGACGATGCCACGGCTGAACCGCAGGCAGAGGTGCAACAACCCA
CGGACACGGATCAGCAGCAGACACCCCCGAATCAAGTGGCCTCAGCCACT
GGTGAAGACGACCAAGAGGATGAAGAATTTGGCGAAGAGGCGGTCCCTGC
CGACGCCGCCCCTATGGAAGTTGACGGAGAAGACCCCCCTGCCTCCGCCG
ACGCGGAGATGTCTGCGCAGCAGCAGCAACAACAAGGTCCCGAGGCGGAA
ACTGCGCCGAAATCGTCATCCACCAAGGCTAAGTCATCCGGTCGCAAGAG
CCGCAAGAGATCGAGTAAGGCAGTTGGCGTTGGTGTTGGTGATGGCGGCG
ATGGCGGCGAACACGCGGAAAATGCCGTTAGTGGCGATGGTGCGGAGACC
CGGACACCGAGAAAGTCGAAACGGTCCCGCAGGTCCTCGTCGGGCGCCGT
CACCCCGGCCGCTGTCGCTGGTACTGGTGATGGTGATGGGGAAACTCCGC
AAAACCCGTTGGTGGCGAAAAAGGATAAGATGGAGGAGGACCAGGATGAC
GGTAGCACACAGGAGACCGATGCTGCTGCTGCTGCCACCGCGGCTGCTTC
TTGTTCTACTTCGAATGGTGACGAGAAAGAACAAGTTACCCAAGAATCGG
GGCACTCGGAGCAACCGGAGACCTCCGACGACAAAGCATCAGCGGAAGTC
GCAGCCGGAGAAGGTGTGGATAATGGGGCTGCTGGAGGAGTTGCAAAAGT
GGGGGGGGAGGGGGGAGGCGGGGGGGACGGGGAGGGGGATGCGGCGGAGT
CCATGGCGATGAATCCGGTGACAATTCGGGTGGATAATTTCGTGAGGCCG
TTCACGCATCCCATGTGTACGACGGTGAGAACCTAGATATGAGGAAGTAA
TTGCGCTGTTCTGATGGTTATCTTGGGCGTTGTTGTCGCTGTTGTCATCG
TTGTTACCTAAGGGTGGTGTGGTCGCCACTGCTTGGCGTTGGTTCATTTT
ACCGTATGCAGCAGACGCAGTAGCCTTTCGGGACAAAATCCACGTGACCT
GATCCAGCTTAACATCGTATCGATTGGGGAGTTCCTTTTGCTGCGTGCTT
TTTCCTTCAAGTGTCTCCTCCCGCAACAGACAGATAAACGGTCAAGCGAT
TCCACGCTATGTTTACTAAGATTATTGCCGTCACATCTACTGCCCACGTC
CCCCAAACAAAACGGCCTGAAAAGGCAAAGGCTTTCACATATGGCGTCAG
AAAAAGTTTATTTTGTCAACTTCGGTGAAATAGGAAGGAGGAGCGACTGA
CCATCGGCGATAGTGCATACCTCATTAACAAATTTTCGCCCCCTCGAGGG
CGCGTGGTCAACTCACATATTTTTCTCTTTCATGAAAAGCCGGAAGCTCT
TGCATTTGTCGTTAGATAGCATTTGGATGCTGTTACAACACACTATAATG
ATGCTCGTGATTTTGTGAGCTACAGTGCAGAGGTATGTTACAAGGTCGAA
GTTTGAACTGAGTATATCCTTTCCGCTAATTATCGTGTTCTAGTTTTGCT
GATGAGCATGTGTAGCGCATGTACACATGTATGCCATCACAGCGACAAGC
AGGTAGGATAATCATTAAGCCCCCCCCCTCTGCAAACGGGATCATGTGAC
AGGTATCCATTTTGAGGTCATGATGCTCGTTACCAAATCCTTCTCCCCTA
GTCGGTTAATACGTTTTTTTGTGGAATCAGTCACTCAGCAACATACATTG
AATTGGCCGAGCATACCTCCATTGATGGCTATTGGCATATTTCCTAATTG
TAGACTTGTCCATCAAACTGTATTGTCCATATTGTTAATTCCCCCCCCCC
CCCCTGTAGGATGTTTTTGAGACGCGTTTGATAACGTAGGAAAAGGTGAT
TGACGATCGGAGATCGTTCCGACAGGAAAAAAGCTACGGTCCGTCCTCTT
GAGCCGTTGTCAACGGTCTAGTAAGTACGGTGTGCATAAAATAAGTAGGC
ACCCCTCCCTTCTCCCGCGAGCTCTCTCCACGGCTTTCCCTCCTTTCGTC
TTGTATGAAATCTTCAATCTCACCATATACATACATGTATAACCAAACGA
GTAGCTGTTGGAGGACAAGGCCGGCGCGCCGCTGCTGGAGAACGGGTTCT
GGATGGATGCCATAAAGACGCACTGTTACGCGACCTTCGCTGGTGAGGAA
GCCGCCAAACGTGCGATCGCCGGCTTACAGGGCTTGCAGTGGCCCGACAG
GAGCTCGAAGCGGCTCGAGGCCAAGGTGGCCGACGTCTCTGCGGAGGAGG
TGAGGGCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4846:146..3453-

>mRNA_H-paniculata_contig4846.11963.1 ID=mRNA_H-paniculata_contig4846.11963.1|Name=mRNA_H-paniculata_contig4846.11963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2628bp|location=Sequence derived from alignment at H-paniculata_contig4846:146..3453- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGACTATACGGTAGCCAGCGATTATACCGTGGAAGATGTGAGGGG
ACTTACTGTGCCCAAGCTTAAGGCGGAGCTAGCCAGGCTGAATCAGCCTT
TGGCTGGTCTCAAGCTTAAGGCCCAGTTTGCCGACGCCCTCACGGTGAGT
TCCTTATGGCGGACTATACGGTAGCCAGCGATTATACCGTGGAAGATGTG
AGGGGACTTACTGTGCCCAAGCTTAAGGCGGAGCTAGCCAGGCTGAATCA
GCCTTTGGCTGGTCTCAAGCTTAAGGCCCAGTTTGCCGACGCCCTCACGG
TGAGTTCCTTATCACAGCAACAGCACCAACAGCGAGAAGGAAAGGACGTC
GACCCCGCTAGCAGCATACCCCATGCTGCAAGCTCTGCTGAAACGGACAA
CACACCGGCAGCAGCAGAAGAAGCTGAAGCTGGCGACGATGCCACGGCTG
AACCGCAGGCAGAGGTGCAACAACCCACGGACACGGATCAGCAGCAGACA
CCCCCGAATCAAGTGGCCTCAGCCACTGGTGAAGACGACCAAGAGGATGA
AGAATTTGGCGAAGAGGCGGTCCCTGCCGACGCCGCCCCTATGGAAGTTG
ACGGAGAAGACCCCCCTGCCTCCGCCGACGCGGAGATGTCTGCGCAGCAG
CAGCAACAACAAGGTCCCGAGGCGGAAACTGCGCCGAAATCGTCATCCAC
CAAGGCTAAGTCATCCGGTCGCAAGAGCCGCAAGAGATCGAGTAAGGCAG
TTGGCGTTGGTGTTGGTGATGGCGGCGATGGCGGCGAACACGCGGAAAAT
GCCGTTAGTGGCGATGGTGCGGAGACCCGGACACCGAGAAAGTCGAAACG
GTCCCGCAGGTCCTCGTCGGGCGCCGTCACCCCGGCCGCTGTCGCTGGTA
CTGGTGATGGTGATGGGGAAACTCCGCAAAACCCGTTGGTGGCGAAAAAG
GATAAGATGGAGGAGGACCAGGATGACGGTAGCACACAGGAGACCGATGC
TGCTGCTGCTGCCACCGCGGCTGCTTCTTGTTCTACTTCGAATGGTGACG
AGAAAGAACAAGTTACCCAAGAATCGGGGCACTCGGAGCAACCGGAGACC
TCCGACGACAAAGCATCAGCGGAAGTCGCAGCCGGAGAAGATCACAGCAA
CAGCACCAACAGCGAGAAGGAAAGGACGTCGACCCCGCTAGCAGCATACC
CCATGCTGCAAGCTCTGCTGAAACGGACAACACACCGGCAGCAGCAGAAG
AAGCTGAAGCTGGCGACGATGCCACGGCTGAACCGCAGGCAGAGGTGCAA
CAACCCACGGACACGGATCAGCAGCAGACACCCCCGAATCAAGTGGCCTC
AGCCACTGGTGAAGACGACCAAGAGGATGAAGAATTTGGCGAAGAGGCGG
TCCCTGCCGACGCCGCCCCTATGGAAGTTGACGGAGAAGACCCCCCTGCC
TCCGCCGACGCGGAGATGTCTGCGCAGCAGCAGCAACAACAAGGTCCCGA
GGCGGAAACTGCGCCGAAATCGTCATCCACCAAGGCTAAGTCATCCGGTC
GCAAGAGCCGCAAGAGATCGAGTAAGGCAGTTGGCGTTGGTGTTGGTGAT
GGCGGCGATGGCGGCGAACACGCGGAAAATGCCGTTAGTGGCGATGGTGC
GGAGACCCGGACACCGAGAAAGTCGAAACGGTCCCGCAGGTCCTCGTCGG
GCGCCGTCACCCCGGCCGCTGTCGCTGGTACTGGTGATGGTGATGGGGAA
ACTCCGCAAAACCCGTTGGTGGCGAAAAAGGATAAGATGGAGGAGGACCA
GGATGACGGTAGCACACAGGAGACCGATGCTGCTGCTGCTGCCACCGCGG
CTGCTTCTTGTTCTACTTCGAATGGTGACGAGAAAGAACAAGTTACCCAA
GAATCGGGGCACTCGGAGCAACCGGAGACCTCCGACGACAAAGCATCAGC
GGAAGTCGCAGCCGGAGAAGTGGGGGGGGAGGGGGGAGGCGGGGGGGACG
GGGAGGGGGATGCGGCGGAGTCCATGGCGATGAATCCGGTGACAATTCGG
GTGGATAATTTCGTGAGGCCGTTCACGCATCCCATGTGTACGACGTGGGG
GGGGAGGGGGGAGGCGGGGGGGACGGGGAGGGGGATGCGGCGGAGTCCAT
GGCGATGAATCCGGTGACAATTCGGGTGGATAATTTCGTGAGGCCGTTCA
CGCATCCCATGTGTACGACGCTGTTGGAGGACAAGGCCGGCGCGCCGCTG
CTGGAGAACGGGTTCTGGATGGATGCCATAAAGACGCACTGTTACGCGAC
CTTCGCTGGTGAGGAAGCCGCCAAACGTGCGATCGCCGGCTTACAGGGCT
TGCAGTGGCCCGACAGGAGCTCGAAGCGGCTCGAGGCCAAGGTGGCCGAC
GTCTCTGCGGAGGAGGTGAGGGCTCTGTTGGAGGACAAGGCCGGCGCGCC
GCTGCTGGAGAACGGGTTCTGGATGGATGCCATAAAGACGCACTGTTACG
CGACCTTCGCTGGTGAGGAAGCCGCCAAACGTGCGATCGCCGGCTTACAG
GGCTTGCAGTGGCCCGACAGGAGCTCGAAGCGGCTCGAGGCCAAGGTGGC
CGACGTCTCTGCGGAGGAGGTGAGGGCT
back to top