mRNA_H-paniculata_contig11866.1196.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11866.1196.1
Unique NamemRNA_H-paniculata_contig11866.1196.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11866.1196.1 vs. uniprot
Match: UPI001475F5F5 (cadmium-translocating P-type ATPase n=1 Tax=Microbispora sp. H11081 TaxID=2729107 RepID=UPI001475F5F5)

HSP 1 Score: 62.0 bits (149), Expect = 3.970e-9
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  169 STVEESMITGESMPVRKGAGDPVFGSTVNQLGSLVMEA 282
            STV+ESMITGESMPVR+G GDP+ GST+N+ GS+VM A
Sbjct:  287 STVDESMITGESMPVRRGEGDPLIGSTINRTGSVVMRA 324
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BLAST of mRNA_H-paniculata_contig11866.1196.1 vs. uniprot
Match: A0A1V4DNV5_9ACTN (Copper-translocating P-type ATPase n=5 Tax=Microbispora TaxID=2005 RepID=A0A1V4DNV5_9ACTN)

HSP 1 Score: 62.0 bits (149), Expect = 3.970e-9
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  169 STVEESMITGESMPVRKGAGDPVFGSTVNQLGSLVMEA 282
            STV+ESMITGESMPVR+G GDP+ GST+N+ GS+VM A
Sbjct:  277 STVDESMITGESMPVRRGEGDPLIGSTINRTGSVVMRA 314
[Close]
BLAST of mRNA_H-paniculata_contig11866.1196.1 vs. uniprot
Match: A0A544Z071_9ACTN (Cadmium-translocating P-type ATPase n=4 Tax=Microbispora TaxID=2005 RepID=A0A544Z071_9ACTN)

HSP 1 Score: 62.0 bits (149), Expect = 3.970e-9
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  169 STVEESMITGESMPVRKGAGDPVFGSTVNQLGSLVMEA 282
            STV+ESMITGESMPVR+G GDP+ GST+N+ GS+VM A
Sbjct:  289 STVDESMITGESMPVRRGEGDPLIGSTINRTGSVVMRA 326
[Close]
BLAST of mRNA_H-paniculata_contig11866.1196.1 vs. uniprot
Match: D8LTL7_ECTSI (Heavy metal translocating P-type ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL7_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.010e-9
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:  169 STVEESMITGESMPVRKGAGDPVFGSTVNQLGSLVMEAQ 285
            STV+ESMITGESMPV K AGD VFGSTVNQ+GS  M AQ
Sbjct:  791 STVDESMITGESMPVTKAAGDLVFGSTVNQMGSFTMLAQ 829
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BLAST of mRNA_H-paniculata_contig11866.1196.1 vs. uniprot
Match: UPI001EEB0A01 (hypothetical protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI001EEB0A01)

HSP 1 Score: 57.4 bits (137), Expect = 5.170e-9
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  169 STVEESMITGESMPVRKGAGDPVFGSTVNQLGSLVMEAQ 285
            +TV+ESM+TGESMPV K  GDPV G T+NQ GSL++ A+
Sbjct:   20 TTVDESMVTGESMPVTKTKGDPVIGGTINQTGSLIIRAE 58
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BLAST of mRNA_H-paniculata_contig11866.1196.1 vs. uniprot
Match: A0A5D0P9D3_9ACTN (Copper-translocating P-type ATPase n=4 Tax=Microbispora TaxID=2005 RepID=A0A5D0P9D3_9ACTN)

HSP 1 Score: 61.2 bits (147), Expect = 7.410e-9
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  169 STVEESMITGESMPVRKGAGDPVFGSTVNQLGSLVMEA 282
            +TV+ESMITGESMPVR+G GDP+ GSTVN+ GS+VM A
Sbjct:  281 TTVDESMITGESMPVRRGEGDPLIGSTVNRTGSVVMRA 318
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BLAST of mRNA_H-paniculata_contig11866.1196.1 vs. uniprot
Match: A0A1D7ZXE1_LIMFE (Cation-transporting ATPase n=62 Tax=Limosilactobacillus fermentum TaxID=1613 RepID=A0A1D7ZXE1_LIMFE)

HSP 1 Score: 60.8 bits (146), Expect = 9.840e-9
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:  169 STVEESMITGESMPVRKGAGDPVFGSTVNQLGSLVMEAQ 285
            +T++ESM+TGESMPV+KG GDPV GST+NQ G+   EAQ
Sbjct:  178 TTIDESMVTGESMPVQKGVGDPVIGSTINQAGTFQFEAQ 216
[Close]
BLAST of mRNA_H-paniculata_contig11866.1196.1 vs. uniprot
Match: A0A1L3GM39_9DELT (Copper-translocating P-type ATPase n=1 Tax=Syntrophotalea acetylenivorans TaxID=1842532 RepID=A0A1L3GM39_9DELT)

HSP 1 Score: 60.1 bits (144), Expect = 1.860e-8
Identity = 26/39 (66.67%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:  169 STVEESMITGESMPVRKGAGDPVFGSTVNQLGSLVMEAQ 285
            S+++ESMITGE +PV KG+GDPV G+TVNQ GSL+M+A+
Sbjct:  299 SSIDESMITGEPLPVAKGSGDPVTGATVNQTGSLIMQAE 337
[Close]
BLAST of mRNA_H-paniculata_contig11866.1196.1 vs. uniprot
Match: UPI0013304FBA (HAD-IC family P-type ATPase n=3 Tax=Enterobacteriaceae TaxID=543 RepID=UPI0013304FBA)

HSP 1 Score: 57.4 bits (137), Expect = 2.790e-8
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  169 STVEESMITGESMPVRKGAGDPVFGSTVNQLGSLVMEAQ 285
            +TV+ESM+TGESMPV K  GDPV G T+NQ GSL++ A+
Sbjct:   23 TTVDESMVTGESMPVTKTKGDPVIGGTINQTGSLIIRAE 61
[Close]
BLAST of mRNA_H-paniculata_contig11866.1196.1 vs. uniprot
Match: UPI00117BA131 (HAD-IC family P-type ATPase n=1 Tax=Salmonella enterica TaxID=28901 RepID=UPI00117BA131)

HSP 1 Score: 57.4 bits (137), Expect = 3.290e-8
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  169 STVEESMITGESMPVRKGAGDPVFGSTVNQLGSLVMEAQ 285
            +TV+ESM+TGESMPV K  GDPV G T+NQ GSL++ A+
Sbjct:   89 TTVDESMVTGESMPVTKTEGDPVIGGTINQTGSLIIRAE 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11866.1196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001475F5F53.970e-973.68cadmium-translocating P-type ATPase n=1 Tax=Microb... [more]
A0A1V4DNV5_9ACTN3.970e-973.68Copper-translocating P-type ATPase n=5 Tax=Microbi... [more]
A0A544Z071_9ACTN3.970e-973.68Cadmium-translocating P-type ATPase n=4 Tax=Microb... [more]
D8LTL7_ECTSI4.010e-979.49Heavy metal translocating P-type ATPase n=2 Tax=Ec... [more]
UPI001EEB0A015.170e-964.10hypothetical protein n=1 Tax=Klebsiella pneumoniae... [more]
A0A5D0P9D3_9ACTN7.410e-973.68Copper-translocating P-type ATPase n=4 Tax=Microbi... [more]
A0A1D7ZXE1_LIMFE9.840e-966.67Cation-transporting ATPase n=62 Tax=Limosilactobac... [more]
A0A1L3GM39_9DELT1.860e-866.67Copper-translocating P-type ATPase n=1 Tax=Syntrop... [more]
UPI0013304FBA2.790e-864.10HAD-IC family P-type ATPase n=3 Tax=Enterobacteria... [more]
UPI00117BA1313.290e-864.10HAD-IC family P-type ATPase n=1 Tax=Salmonella ent... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11866contigH-paniculata_contig11866:616..3586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog2880.D8LTL7
KEGG rclassRC00002
KEGG koko:K17686
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cation-transporting ATPase activity
EggNOG OGsCOG2217@1,KOG0207@2759
EC3.6.3.54
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size288
Cds size285
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11866.1196.1prot_H-paniculata_contig11866.1196.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11866 616..3585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928896.686075-CDS-H-paniculata_contig11866:615..7141622928896.686075-CDS-H-paniculata_contig11866:615..714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11866 616..714 +
1691480660.4528027-CDS-H-paniculata_contig11866:615..7141691480660.4528027-CDS-H-paniculata_contig11866:615..714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11866 616..714 +
1622928896.7000248-CDS-H-paniculata_contig11866:1874..19641622928896.7000248-CDS-H-paniculata_contig11866:1874..1964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11866 1875..1964 +
1691480660.4735463-CDS-H-paniculata_contig11866:1874..19641691480660.4735463-CDS-H-paniculata_contig11866:1874..1964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11866 1875..1964 +
1622928896.711986-CDS-H-paniculata_contig11866:3489..35851622928896.711986-CDS-H-paniculata_contig11866:3489..3585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11866 3490..3585 +
1691480660.4860058-CDS-H-paniculata_contig11866:3489..35851691480660.4860058-CDS-H-paniculata_contig11866:3489..3585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11866 3490..3585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11866.1196.1

>prot_H-paniculata_contig11866.1196.1 ID=prot_H-paniculata_contig11866.1196.1|Name=mRNA_H-paniculata_contig11866.1196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
PRTALLLPPTNTGNLPVTADDMGVTEIDAGLVQVGDRLLVRPGVLLPADG
VVLSGDSTVEESMITGESMPVRKGAGDPVFGSTVNQLGSLVMEAQ
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mRNA from alignment at H-paniculata_contig11866:616..3586+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11866.1196.1 ID=mRNA_H-paniculata_contig11866.1196.1|Name=mRNA_H-paniculata_contig11866.1196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2971bp|location=Sequence derived from alignment at H-paniculata_contig11866:616..3586+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAGAACGGCGCTTTTGTTGCCGCCGACGAACACAGGCAATCTGCCCGT
CACCGCCGATGATATGGGCGTTACAGAAATCGATGCAGGGCTGGTGCAGG
TGAACAAAGTAGAGGAGAGGATATGAAAAAGATGTGATGAGTGTATTTCG
TTGCACTGTGAAATAGTACGCGAATGTGGCCATTGTTGTAGTACGTCGCC
GTCGTCGCCGTTTCCGAAAGGTCTTTCCCCCTCTACCTCATGTAACTTGT
GAAATTAAATCGTGATAGACGCTGTGCCTTGCGATGTGTTTTTCTTTCTT
TTTTTTTAACCCCCGGAAGGCTGAGGCAAAAATCTTTACCGATGCTTCCA
TACTCAAGTATTTTACCAATGTCTACATTTCCTTTAATAGAACAGAGTTA
GTTATTCCTCTGCGGGGTAGGCGCCGGCCTTGTGATGTATGTGTGTGTGT
GTGTGTGTGTGTGTGTGTACATAACGGACGGATGGGGAATAGTTGAAGGT
GAACCGATAATTCTGAATTATTATGTATGAACCGGATAGTGTTCGTGTTA
CTCATTTATGGACGTATGATGGTGAACTTACCATGGAACATGCAGGAGTA
TCGTAACACCCTTTGATATCGCACCCCTCCCCTCATGTTACTTTCCAAAC
TAAATTTTCTCGGCAACGACGGTGCTCATGTCATCGATAGCGGTATCGTT
GAAAAGATTTCGTTGAGACTTTGATGGTGGACCTGCTGTTTCGGCAGTGT
AGGCAGACTTTTGCTCGTCGAGAAGATCAGCTTTAAAAGATAAAAGCAGG
GTGTGTGATAGCAAAGGGTGTTACGGTAATAGCGTACCTCTTTGACCAGC
GCGGACCAAAGTCCGAATGTGGAGGATGACCTGTCTGTGCCTGGACAAAT
CTAGCAAACAAGTCCAGCTCAACCCCCATATCTCCTCCCCTGTGCTCGTG
ATAGTATTGGGCGCATTTAGGTCCCTCTACCTTTGAGAGGACCAATCACG
TTTAATCACGTACGTGAACTCTGCTGATCGCATGAAATGGATGGGAATTG
TCGTCGAGAGAGAAGTGGCGTATGTACGAAAGGCCGTCGGTTTCAAGTAC
CGGCAATCAGCAAGGGTTTTCACGTTGAGCTTGTACAGAAGGCAGCTACC
TCACCATTGAGCTATACGGTCAGCTCCCACCCCCACCCTCATCCCCACCT
TGGCGCTGTATTTTGTCTCTTCTGTTGATGGGAAAATTGGAACATGGCAA
CTTGTGTAGGTTGGCGACCGGCTTTTGGTGAGGCCCGGGGTTCTTCTACC
CGCCGATGGGGTTGTTTTGTCGGGCGACAGCACTGTGGAGGAGAGTATGG
TAAGGGAGTGTGTTGTAGTTGCGATAAGAATGTTTTCTAGAGCTAACCAC
GAGGGCAGCGAGTCAGCGTGTGCGTGGTTTATTCATTAGGAGTATTTCGA
TGGACAACAGCCTGCTTGTCTATTCACTTGTTTGGAGGGTAAATGGCCCC
CCGGGTGTCGTCGTTCATTTCAGTGTTTGAGCTCAAGTGACATTTGAAAC
ACGATGTGCCATGTGTAAAGGGATATGTCTGTTGTTGTTTTTTATATACT
GACATCATCTTAAGGAGCCCAAAATACAATCGGCGGATATTAGTAGGTAG
CCTATTTGCAGTGGTGGCTAGTAAAAACGAGCCAGACATTTGCCTTCTCT
TTGCTCGTCTGTATGTGTGTGGAAAGTGCAGAGGACTTTTCTGACGTCTC
TGAACCCCCATCTCATACACAGCGTCATCCTCCATCCAGCGGCAGTTTGG
CCTCATGTCGAAACATCTTCCTTGTCAACTATCTCCGACGACCTCCAGCA
GATCGCTCCTTTTGGTGAAGTCTACTTTCAAGTAGAGAGATGATGTACCC
GAACCTGGGGTCGAGACCCGAGTCCGAGCGTAACCTCCGCGAGAGCCGGT
CACACCTCAAAAGGATAAAGGTCGACGAGGATCGATGAAGACCGCTATAG
TTTTTCAATTCGATACTAGTCTTGATAGTGTACCAAATCGACTTATGAAA
GTGAATCTTGACGGAAAGTTCAGGGGGTTTATCACCGGACCACGGGGCGG
AACCGGGATTGGGACATATGGAGTTGTGTCAGGACGGGACGGGACAGGAC
GAGACGGGACGGGACGCAAGGGGTTGAAATGTCAACGGAACGAGACCCTG
TCCTCCAAATTTGCAAGTGTTCGGATCTGTCCGGGGGGTGGAGTGTTCCA
CACATACAAGGAATGACTATTCGTCTGAACCGGCTAGAATAAATGAGACC
CCTTAACCGTCATCGAAAGCGAAGCTCCCTGTTTCTGTGATCCTGTTTGC
ACTTTTTCGCTCTCAGATGGTGTGCATGCGTGAATGTTGTATGTTACAGT
CGATCCCTTCTTCAACTCGACACCTGTCGGGGGTCGGGATTTTGAGTGTC
AAGGGGGGTACCACCGCCTGGTCAATCATCTCAGACGACTCAGTGGTTGT
TGTGTGCGTGTGTGGTATGGATGCATGAATCTCCACAAATTATTCTATTT
TCTGAGCATAGAGTTTGGTCTTCAAATGGTGTCAAGTGCTATGTGCTATG
AAGGAGGCGTTTTTTAACTAGGAAACGAAATAATTTGTTGATCTGAGGTG
TGAACTATAACAAGTAGTGTTCTCATATGTTGGATGAGTTTTTTTTTCCA
TGTATAGGTTTAGAGGTCTATCTTCTTCATGTTCGCGTGACATCCTAGAG
GAGCAAGAAAATCCTCTATTTTTTACCAAAACAAGTGTTTTTGTATGTGT
AGGGGGGGATTCGAAGTTGCTTGTCACCTAATAGTGGTTGGTGAAGTAAC
ATTTTACGGCTTGTAATTTTCCAGATCACCGGAGAGAGCATGCCGGTGAG
GAAAGGAGCTGGCGATCCTGTGTTCGGGTCCACTGTCAACCAGCTGGGCT
CCCTGGTTATGGAAGCTCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11866:616..3586+

>mRNA_H-paniculata_contig11866.1196.1 ID=mRNA_H-paniculata_contig11866.1196.1|Name=mRNA_H-paniculata_contig11866.1196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig11866:616..3586+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAGAACGGCGCTTTTGTTGCCGCCGACGAACACAGGCAATCTGCCCGT
CACCGCCGATGATATGGGCGTTACAGAAATCGATGCAGGGCTGGTGCAGC
CGAGAACGGCGCTTTTGTTGCCGCCGACGAACACAGGCAATCTGCCCGTC
ACCGCCGATGATATGGGCGTTACAGAAATCGATGCAGGGCTGGTGCAGGT
TGGCGACCGGCTTTTGGTGAGGCCCGGGGTTCTTCTACCCGCCGATGGGG
TTGTTTTGTCGGGCGACAGCACTGTGGAGGAGAGTATGGTTGGCGACCGG
CTTTTGGTGAGGCCCGGGGTTCTTCTACCCGCCGATGGGGTTGTTTTGTC
GGGCGACAGCACTGTGGAGGAGAGTATGATCACCGGAGAGAGCATGCCGG
TGAGGAAAGGAGCTGGCGATCCTGTGTTCGGGTCCACTGTCAACCAGCTG
GGCTCCCTGGTTATGGAAGCTCAAATCACCGGAGAGAGCATGCCGGTGAG
GAAAGGAGCTGGCGATCCTGTGTTCGGGTCCACTGTCAACCAGCTGGGCT
CCCTGGTTATGGAAGCTCAA
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