mRNA_H-paniculata_contig4843.11959.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4843.11959.1 vs. uniprot
Match: D7FPM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPM4_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 4.150e-14 Identity = 123/442 (27.83%), Postives = 161/442 (36.43%), Query Frame = 3
Query: 681 LYTLILQAAEPKDWRKASDLVNGIFEEDFGFEPG-PHHRAMAAILCWRAGASSRAARHLDDMGGIEGVL--------------------------AARYPLHLLPSSKPSTQVDTCRSLLTAMDIYGRAGRWAKVAEAFSAL-----------------------------------------------------ANSKPPADSPVGAANG----------SASAADSAVAVDLLSAHHSTPLAFAVTAYLKLGHVNVAAAALSIMRATLSSDGAAMGAMRSVVAPRRSPGVTMGTEPGKGQNGGDHEAESRAVEKQTLLDGVGGDNTEEELVYMGRHPDVAWINSTVRAFVRKERWDLAAAVLSPEICEWACIDLVV---LGEVGQPSSNCAASEDVRGEREKLRQSLGPFLEKKATVKRLANGTVEGAKACIRALEMAVG 1727
L L+L + RK S LV+ FG + P A+AA+ WR G + AARHLD+M L AA + PS P Q L A+DIYGRA RWA AEAF A A P P+ G A S + + + H + +A A+TAYLKLG V AA LS ++A++ + GA + A SPG G+E G G G RA +L G T D W+ TVR F R +WD+A VLS +I W + G+ G + AASE SL FLE K K+ A+G V G+KAC+ L++A G
Sbjct: 244 LMALVLSKVPVGNSRKISRLVSNKGSRAFGLQASTPDMLAVAAVAHWREGVVTGAARHLDEMFARIKKLNKEMVASPSSLVQEWLAADRQRIRDAAAAAAVETPPSHPPERQWPW---RLVAVDIYGRANRWAAAAEAFDAFIGDMGFPSSRNGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVSARIAKPTRLPLPEEFGXXXXXXXXXXKAGEFSSPLPLQAWLSFHPSAIAHAITAYLKLGRVEEAAEVLSFLKASVRAGGA------TPAAGGLSPGYVGGSEEGGGYGG-------RAGSDPSLS----GPPTV----------DPGWMEGTVRGFTRAGKWDMALEVLSTDIVAWFSAETGGDRRSGDGGGGARLVAASE-----------SLEAFLEAKLXAKKPASGQVAGSKACLELLKVAAG 644 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4843.11959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4843.11959.1 >prot_H-paniculata_contig4843.11959.1 ID=prot_H-paniculata_contig4843.11959.1|Name=mRNA_H-paniculata_contig4843.11959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=945bp MLRCRSKIRRATIVPGIFESLVRSRCLGTGGNALRAPTADRSITSERIGAback to top mRNA from alignment at H-paniculata_contig4843:6481..13115- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4843.11959.1 ID=mRNA_H-paniculata_contig4843.11959.1|Name=mRNA_H-paniculata_contig4843.11959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6635bp|location=Sequence derived from alignment at H-paniculata_contig4843:6481..13115- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4843:6481..13115- >mRNA_H-paniculata_contig4843.11959.1 ID=mRNA_H-paniculata_contig4843.11959.1|Name=mRNA_H-paniculata_contig4843.11959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5670bp|location=Sequence derived from alignment at H-paniculata_contig4843:6481..13115- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |