mRNA_H-paniculata_contig4843.11958.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4843.11958.1
Unique NamemRNA_H-paniculata_contig4843.11958.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4843.11958.1 vs. uniprot
Match: A0A6H5JA21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA21_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.070e-8
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 3 
Query: 1479 TKPIDVIGLGKFRPGDDADQLGQSETEEDRARRRDSQTMNLIRVALRRAPANRAWRRRSWLVMVKMRHAKTAAAMTDAAAVAAATRKSLE 1748
            T PI V+GLG     +D      +E+  + ARRRD QTM  IR+ALR APA+RAWRRRSWLVM++        A  +A A A ATRK  E
Sbjct:  443 TTPIGVVGLGHCGRDEDPTLRLPAESAAEHARRRDPQTMEAIRMALRNAPADRAWRRRSWLVMLR--------ASAEAEAAAKATRKKWE 524
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BLAST of mRNA_H-paniculata_contig4843.11958.1 vs. uniprot
Match: D7FPM3_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM3_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.790e-8
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 3 
Query: 1479 TKPIDVIGLGKFRPGDDADQLGQSETEEDRARRRDSQTMNLIRVALRRAPANRAWRRRSWLVMVKMRHAKTAAAMTDAAAVAAATRKSLE 1748
            T P+ V+GLG     +D      +E+  + ARRRD QTM  IR+ALR APA+RAWRRRSWLVM+++          +A A A ATRK  E
Sbjct:  410 TTPVGVVGLGNCGRDEDPTLRLTTESAAEHARRRDPQTMEAIRMALRNAPADRAWRRRSWLVMLRV--------SAEAEAAAKATRKKWE 491
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4843.11958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JA21_9PHAE1.070e-850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPM3_ECTSI1.790e-847.78Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4843contigH-paniculata_contig4843:3029..5490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog2880.D7FPM3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size2180
Cds size1944
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4843.11958.1prot_H-paniculata_contig4843.11958.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4843 3029..5254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.1059885-CDS-H-paniculata_contig4843:3028..41131622930434.1059885-CDS-H-paniculata_contig4843:3028..4113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4843 3029..4113 -
1691481290.458327-CDS-H-paniculata_contig4843:3028..41131691481290.458327-CDS-H-paniculata_contig4843:3028..4113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4843 3029..4113 -
1622930434.121261-CDS-H-paniculata_contig4843:4395..52541622930434.121261-CDS-H-paniculata_contig4843:4395..5254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4843 4396..5254 -
1691481290.467998-CDS-H-paniculata_contig4843:4395..52541691481290.467998-CDS-H-paniculata_contig4843:4395..5254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4843 4396..5254 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.1372516-UTR-H-paniculata_contig4843:5254..54901622930434.1372516-UTR-H-paniculata_contig4843:5254..5490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4843 5255..5490 -
1691481290.4767108-UTR-H-paniculata_contig4843:5254..54901691481290.4767108-UTR-H-paniculata_contig4843:5254..5490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4843 5255..5490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4843.11958.1

>prot_H-paniculata_contig4843.11958.1 ID=prot_H-paniculata_contig4843.11958.1|Name=mRNA_H-paniculata_contig4843.11958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=648bp
MSEQGHGSEEINTACNLMREAGERVMANLVGASAASCLPHIDWPEVMGKH
LRLAVARTRYLASADLVITDNFPDVADRVKAHPLHGAATCRDIPPAALSQ
LLSKPEPGFSCDVLDGNGMSALHWVCHEGRVDWARDLLEAGASKDLVDNR
GHSALMMAAMGGQVVTARLLCAAGADTELEANTTGAAALHLAVVDGNLEL
ARVLVHEGGAALNHRTAMRRQSALHLAAMDGRTDFVKMLCAAGADTEIRE
GGTGYMPLHSAVSEGHMEATVALMECGANPDSRSLMQLTPLMFAALLGEE
AIVRALLRGGAGAGAAGIGNLTALHFASERGFARICHILLKAGADISARM
DKPPPRSTPLHVACRNTRLSCVLTLLGAGADETLGDETPARPGRGGAALA
GAAADEATSPLLLPTKPIDVIGLGKFRPGDDADQLGQSETEEDRARRRDS
QTMNLIRVALRRAPANRAWRRRSWLVMVKMRHAKTAAAMTDAAAVAAATR
KSLEGQRAFGEPEVDGNVGIVELTGSPALTMSSAGSSAVGTAAVPPKGTL
DQSAAVASVGADQLSDGNSDTSGGVAVLEEATVIDQRCRSSIAVQEGKNS
DKETCDSGVRETMEGCSLEEKSAVAGDAMHHKRARQDPPPAEGAGAGA
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mRNA from alignment at H-paniculata_contig4843:3029..5490-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4843.11958.1 ID=mRNA_H-paniculata_contig4843.11958.1|Name=mRNA_H-paniculata_contig4843.11958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2462bp|location=Sequence derived from alignment at H-paniculata_contig4843:3029..5490- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGGCGAGTCAAACACATCCTCTACTGCTATCGTTGCTGATGCCAGGC
TGATTCGTACTAAGTGATGTGAATTGTGCTGAGTGAACTACTCTATTGTG
CAGCTTTTTCGTTGTCTCCATAACTAGTATGTTGTAGACGCCACATTGGC
GTGTAGACTAGTTTTACTTACAACACCCTTCACACTCTAAACACACTCCT
AGCAGAAGGAACACTATCCTGTAGACGGACGAGTCGATGAGTGAGCAAGG
TCATGGCTCAGAGGAAATCAACACCGCCTGCAACCTAATGCGGGAGGCCG
GCGAGCGAGTTATGGCCAATCTCGTGGGAGCTTCCGCCGCGTCTTGCCTG
CCGCATATAGACTGGCCGGAAGTCATGGGCAAGCACCTACGACTCGCGGT
GGCACGTACACGCTACTTAGCCTCAGCAGACTTGGTCATCACGGACAACT
TTCCCGACGTGGCAGATAGAGTCAAGGCTCATCCCCTTCACGGAGCAGCA
ACATGTCGTGACATTCCCCCTGCTGCGCTGTCCCAGCTCCTATCGAAGCC
TGAACCCGGATTTAGTTGCGATGTGCTGGACGGCAATGGCATGTCAGCTT
TGCATTGGGTTTGCCACGAAGGTCGCGTTGACTGGGCGAGAGATTTGCTT
GAAGCCGGGGCGAGCAAGGACCTTGTCGACAACCGGGGCCACTCAGCCCT
TATGATGGCAGCGATGGGAGGGCAGGTGGTGACGGCGAGGTTGCTTTGCG
CGGCAGGCGCGGACACGGAGCTAGAGGCAAACACAACCGGAGCAGCGGCG
CTGCACTTGGCAGTAGTCGATGGCAATCTCGAGTTAGCACGAGTGTTAGT
GCACGAAGGCGGGGCGGCCTTGAACCACAGGACCGCCATGCGAAGACAAT
CCGCGTTGCACCTGGCCGCGATGGACGGTCGCACCGATTTTGTGAAGATG
CTTTGCGCGGCTGGCGCCGACACCGAGATTCGAGAGGGGGGCACTGGCTA
CATGCCTCTTCATTCGGCCGTGTCGGAGGGACATATGGAGGCGACCGTCG
CCCTCATGGAGTGCGGAGCGAACCCGGACTCTCGCAGCCTTATGCGTGAG
TGCTGCCTTCTCGGGTATACAGTGCGGCACCGTTTTGCTGTATTTACTGC
GGCAGCTTGTACGTGGATTGCAACGCAAGATAGCGCAGCTGGGTATGACG
TGTCGGCGTCCGTACAGTGGAGTTCATATGCTTTAAACACACTATTGTAG
CCAATCTTGAATTGTGTCGAGCAAAACATGCAAAATAAGCAAAACATTTT
GTAAAATACCCCGCTGTTCTTGCTGTTGCCGCTGCCGCTGCTCTTTGCTG
ATTCCCGTCCTCCTCTCGCCCTCCCAGAGCTGACTCCTCTAATGTTCGCT
GCACTTCTGGGAGAAGAAGCTATTGTGCGAGCACTTTTACGAGGGGGAGC
GGGGGCCGGCGCCGCGGGCATCGGAAATCTCACAGCGTTGCACTTTGCGT
CCGAGAGGGGATTCGCGAGAATATGCCACATCCTCCTCAAGGCCGGCGCC
GATATTTCGGCAAGGATGGATAAACCACCACCGCGGTCCACCCCTCTGCA
CGTCGCCTGTCGCAATACTAGACTCTCGTGCGTCTTGACACTGCTGGGTG
CTGGCGCCGATGAAACCTTAGGGGACGAGACCCCTGCCCGTCCCGGGCGC
GGGGGGGCGGCACTAGCCGGGGCTGCGGCAGACGAGGCTACCTCCCCGTT
GCTGCTACCGACCAAACCCATTGACGTTATCGGGCTTGGAAAGTTTCGCC
CGGGCGACGACGCGGATCAGCTCGGCCAGTCGGAGACCGAGGAGGACCGT
GCAAGGCGACGAGACTCACAGACGATGAACCTCATTCGCGTGGCACTGCG
ACGGGCGCCGGCGAACCGAGCATGGCGTCGGCGGTCGTGGCTGGTAATGG
TCAAGATGCGCCACGCAAAAACGGCCGCGGCCATGACGGACGCGGCAGCC
GTAGCCGCGGCGACGCGCAAGAGTTTGGAAGGGCAACGCGCTTTTGGCGA
GCCAGAGGTGGATGGTAATGTTGGTATCGTGGAGTTGACAGGGTCGCCGG
CGCTGACGATGTCCTCCGCTGGCTCGTCCGCCGTTGGGACGGCAGCAGTG
CCGCCAAAGGGAACACTGGATCAGTCGGCAGCAGTTGCAAGTGTCGGCGC
TGACCAGCTGAGTGACGGAAATAGCGATACAAGTGGGGGTGTAGCAGTAC
TAGAGGAAGCGACCGTGATTGACCAGCGTTGTCGAAGTTCGATCGCAGTG
CAGGAGGGCAAAAATAGTGATAAGGAGACGTGTGACAGCGGGGTCCGGGA
AACAATGGAGGGTTGCTCATTAGAAGAGAAATCGGCTGTGGCAGGTGATG
CGATGCACCACAAACGCGCTAGGCAGGACCCACCTCCGGCAGAAGGGGCG
GGAGCGGGGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4843:3029..5490-

>mRNA_H-paniculata_contig4843.11958.1 ID=mRNA_H-paniculata_contig4843.11958.1|Name=mRNA_H-paniculata_contig4843.11958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3888bp|location=Sequence derived from alignment at H-paniculata_contig4843:3029..5490- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGAGCAAGGTCATGGCTCAGAGGAAATCAACACCGCCTGCAACCT
AATGCGGGAGGCCGGCGAGCGAGTTATGGCCAATCTCGTGGGAGCTTCCG
CCGCGTCTTGCCTGCCGCATATAGACTGGCCGGAAGTCATGGGCAAGCAC
CTACGACTCGCGGTGGCACGTACACGCTACTTAGCCTCAGCAGACTTGGT
CATCACGGACAACTTTCCCGACGTGGCAGATAGAGTCAAGGCTCATCCCC
TTCACGGAGCAGCAACATGTCGTGACATTCCCCCTGCTGCGCTGTCCCAG
CTCCTATCGAAGCCTGAACCCGGATTTAGTTGCGATGTGCTGGACGGCAA
TGGCATGTCAGCTTTGCATTGGGTTTGCCACGAAGGTCGCGTTGACTGGG
CGAGAGATTTGCTTGAAGCCGGGGCGAGCAAGGACCTTGTCGACAACCGG
GGCCACTCAGCCCTTATGATGGCAGCGATGGGAGGGCAGGTGGTGACGGC
GAGGTTGCTTTGCGCGGCAGGCGCGGACACGGAGCTAGAGGCAAACACAA
CCGGAGCAGCGGCGCTGCACTTGGCAGTAGTCGATGGCAATCTCGAGTTA
GCACGAGTGTTAGTGCACGAAGGCGGGGCGGCCTTGAACCACAGGACCGC
CATGCGAAGACAATCCGCGTTGCACCTGGCCGCGATGGACGGTCGCACCG
ATTTTGTGAAGATGCTTTGCGCGGCTGGCGCCGACACCGAGATTCGAGAG
GGGGGCACTGGCTACATGCCTCTTCATTCGGCCGTGTCGGAGGGACATAT
GGAGGCGACCGTCGCCCTCATGGAGTGCGGAGCGAACCCGGACTCTCGCA
GCCTTATGCATGAGTGAGCAAGGTCATGGCTCAGAGGAAATCAACACCGC
CTGCAACCTAATGCGGGAGGCCGGCGAGCGAGTTATGGCCAATCTCGTGG
GAGCTTCCGCCGCGTCTTGCCTGCCGCATATAGACTGGCCGGAAGTCATG
GGCAAGCACCTACGACTCGCGGTGGCACGTACACGCTACTTAGCCTCAGC
AGACTTGGTCATCACGGACAACTTTCCCGACGTGGCAGATAGAGTCAAGG
CTCATCCCCTTCACGGAGCAGCAACATGTCGTGACATTCCCCCTGCTGCG
CTGTCCCAGCTCCTATCGAAGCCTGAACCCGGATTTAGTTGCGATGTGCT
GGACGGCAATGGCATGTCAGCTTTGCATTGGGTTTGCCACGAAGGTCGCG
TTGACTGGGCGAGAGATTTGCTTGAAGCCGGGGCGAGCAAGGACCTTGTC
GACAACCGGGGCCACTCAGCCCTTATGATGGCAGCGATGGGAGGGCAGGT
GGTGACGGCGAGGTTGCTTTGCGCGGCAGGCGCGGACACGGAGCTAGAGG
CAAACACAACCGGAGCAGCGGCGCTGCACTTGGCAGTAGTCGATGGCAAT
CTCGAGTTAGCACGAGTGTTAGTGCACGAAGGCGGGGCGGCCTTGAACCA
CAGGACCGCCATGCGAAGACAATCCGCGTTGCACCTGGCCGCGATGGACG
GTCGCACCGATTTTGTGAAGATGCTTTGCGCGGCTGGCGCCGACACCGAG
ATTCGAGAGGGGGGCACTGGCTACATGCCTCTTCATTCGGCCGTGTCGGA
GGGACATATGGAGGCGACCGTCGCCCTCATGGAGTGCGGAGCGAACCCGG
ACTCTCGCAGCCTTATGCAGCTGACTCCTCTAATGTTCGCTGCACTTCTG
GGAGAAGAAGCTATTGTGCGAGCACTTTTACGAGGGGGAGCGGGGGCCGG
CGCCGCGGGCATCGGAAATCTCACAGCGTTGCACTTTGCGTCCGAGAGGG
GATTCGCGAGAATATGCCACATCCTCCTCAAGGCCGGCGCCGATATTTCG
GCAAGGATGGATAAACCACCACCGCGGTCCACCCCTCTGCACGTCGCCTG
TCGCAATACTAGACTCTCGTGCGTCTTGACACTGCTGGGTGCTGGCGCCG
ATGAAACCTTAGGGGACGAGACCCCTGCCCGTCCCGGGCGCGGGGGGGCG
GCACTAGCCGGGGCTGCGGCAGACGAGGCTACCTCCCCGTTGCTGCTACC
GACCAAACCCATTGACGTTATCGGGCTTGGAAAGTTTCGCCCGGGCGACG
ACGCGGATCAGCTCGGCCAGTCGGAGACCGAGGAGGACCGTGCAAGGCGA
CGAGACTCACAGACGATGAACCTCATTCGCGTGGCACTGCGACGGGCGCC
GGCGAACCGAGCATGGCGTCGGCGGTCGTGGCTGGTAATGGTCAAGATGC
GCCACGCAAAAACGGCCGCGGCCATGACGGACGCGGCAGCCGTAGCCGCG
GCGACGCGCAAGAGTTTGGAAGGGCAACGCGCTTTTGGCGAGCCAGAGGT
GGATGGTAATGTTGGTATCGTGGAGTTGACAGGGTCGCCGGCGCTGACGA
TGTCCTCCGCTGGCTCGTCCGCCGTTGGGACGGCAGCAGTGCCGCCAAAG
GGAACACTGGATCAGTCGGCAGCAGTTGCAAGTGTCGGCGCTGACCAGCT
GAGTGACGGAAATAGCGATACAAGTGGGGGTGTAGCAGTACTAGAGGAAG
CGACCGTGATTGACCAGCGTTGTCGAAGTTCGATCGCAGTGCAGGAGGGC
AAAAATAGTGATAAGGAGACGTGTGACAGCGGGGTCCGGGAAACAATGGA
GGGTTGCTCATTAGAAGAGAAATCGGCTGTGGCAGGTGATGCGATGCACC
ACAAACGCGCTAGGCAGGACCCACCTCCGGCAGAAGGGGCGGGAGCGGGG
GCGAGCTGACTCCTCTAATGTTCGCTGCACTTCTGGGAGAAGAAGCTATT
GTGCGAGCACTTTTACGAGGGGGAGCGGGGGCCGGCGCCGCGGGCATCGG
AAATCTCACAGCGTTGCACTTTGCGTCCGAGAGGGGATTCGCGAGAATAT
GCCACATCCTCCTCAAGGCCGGCGCCGATATTTCGGCAAGGATGGATAAA
CCACCACCGCGGTCCACCCCTCTGCACGTCGCCTGTCGCAATACTAGACT
CTCGTGCGTCTTGACACTGCTGGGTGCTGGCGCCGATGAAACCTTAGGGG
ACGAGACCCCTGCCCGTCCCGGGCGCGGGGGGGCGGCACTAGCCGGGGCT
GCGGCAGACGAGGCTACCTCCCCGTTGCTGCTACCGACCAAACCCATTGA
CGTTATCGGGCTTGGAAAGTTTCGCCCGGGCGACGACGCGGATCAGCTCG
GCCAGTCGGAGACCGAGGAGGACCGTGCAAGGCGACGAGACTCACAGACG
ATGAACCTCATTCGCGTGGCACTGCGACGGGCGCCGGCGAACCGAGCATG
GCGTCGGCGGTCGTGGCTGGTAATGGTCAAGATGCGCCACGCAAAAACGG
CCGCGGCCATGACGGACGCGGCAGCCGTAGCCGCGGCGACGCGCAAGAGT
TTGGAAGGGCAACGCGCTTTTGGCGAGCCAGAGGTGGATGGTAATGTTGG
TATCGTGGAGTTGACAGGGTCGCCGGCGCTGACGATGTCCTCCGCTGGCT
CGTCCGCCGTTGGGACGGCAGCAGTGCCGCCAAAGGGAACACTGGATCAG
TCGGCAGCAGTTGCAAGTGTCGGCGCTGACCAGCTGAGTGACGGAAATAG
CGATACAAGTGGGGGTGTAGCAGTACTAGAGGAAGCGACCGTGATTGACC
AGCGTTGTCGAAGTTCGATCGCAGTGCAGGAGGGCAAAAATAGTGATAAG
GAGACGTGTGACAGCGGGGTCCGGGAAACAATGGAGGGTTGCTCATTAGA
AGAGAAATCGGCTGTGGCAGGTGATGCGATGCACCACAAACGCGCTAGGC
AGGACCCACCTCCGGCAGAAGGGGCGGGAGCGGGGGCG
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