mRNA_H-paniculata_contig48429.11957.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48429.11957.1
Unique NamemRNA_H-paniculata_contig48429.11957.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig48429.11957.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 62.8 bits (151), Expect = 5.230e-9
Identity = 31/87 (35.63%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    7 EYRKVGVTEIWICDNGATKHMTHDSDFLFNYQEC-DGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLG 264
            E   + V ++WI D+GA++HMTH S+++ N Q   D HV L DG +  + G G +++Q   D + +   L  V ++P L+ +L S+G
Sbjct:  278 EILNLEVKDVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364          
BLAST of mRNA_H-paniculata_contig48429.11957.1 vs. uniprot
Match: A0A5D3DBV2_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DBV2_CUCME)

HSP 1 Score: 54.3 bits (129), Expect = 2.470e-6
Identity = 30/99 (30.30%), Postives = 53/99 (53.54%), Query Frame = 1
Query:   25 VTEIWICDNGATKHMTHDSDFLFNYQECD-GHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHECRCSREGLRI 318
            + + WI D+  T HMTH+ DFL N+Q+ D G + L D     ++G     +Q     +++ + LT V ++P L  +L+SLG+    G   +   E +++
Sbjct:   52 IQDAWIMDSRCTFHMTHNLDFLINFQKSDRGTILLGDNGTCDVKGT--CSVQITTHDKMIRI-LTNVRYVPKLKCNLISLGELDRSGCTIKSENEVMKV 147          
BLAST of mRNA_H-paniculata_contig48429.11957.1 vs. uniprot
Match: A0A5A7U112_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7U112_CUCME)

HSP 1 Score: 54.3 bits (129), Expect = 4.020e-6
Identity = 30/87 (34.48%), Postives = 46/87 (52.87%), Query Frame = 1
Query:   25 VTEIWICDNGATKHMTHDSDFLFNYQECDGH-VRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFG 282
            +   WI D+G   HMTH+ DFL N+Q+ D   V L D +   ++G G +  Q      ++ M LT V ++P L  +L+SL +    G
Sbjct:   64 IQNAWIMDSGCMYHMTHNRDFLINFQKSDREKVLLGDNSTYDVKGTGSV--QIATHDRMIKM-LTNVRYVPELKRNLISLNELDKSG 147          
BLAST of mRNA_H-paniculata_contig48429.11957.1 vs. uniprot
Match: A0A225WMA1_9STRA (CCHC-type domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMA1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.000e-6
Identity = 32/113 (28.32%), Postives = 57/113 (50.44%), Query Frame = 1
Query:   31 EIWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEC--RCSREGLRINLKTGRVLSAERFGS 363
            +IWI DNG+++H+ +D+ +L + +ECD      +G  L I   G + L+        +++L+ V F   + H+L+S G+    G+    R  R    ++     VL+ E  GS
Sbjct:  292 DIWILDNGSSRHLVNDASYLDDVEECDDQCVQPNGEPLAISMKGSVTLRVAACGVEQVVRLSNVYFAKNVVHNLISYGQLDKVGYPLAHRAERRSKPLSEVNMAVLNEEVNGS 404          
BLAST of mRNA_H-paniculata_contig48429.11957.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM)

HSP 1 Score: 53.9 bits (128), Expect = 6.600e-6
Identity = 35/103 (33.98%), Postives = 57/103 (55.34%), Query Frame = 1
Query:   40 ICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHECRCSREGLRI-NLKTGRVL 342
            I D+GA+ HM  D   + + ++  G V +A+G+R+PIEGVG L L   FD +      +   ++P  + +LLS+ K   D G +     + +   +LKTGRV+
Sbjct:  308 IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401          
BLAST of mRNA_H-paniculata_contig48429.11957.1 vs. uniprot
Match: A0A4Y2HR51_ARAVE (Uncharacterized protein n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HR51_ARAVE)

HSP 1 Score: 52.0 bits (123), Expect = 9.850e-6
Identity = 34/108 (31.48%), Postives = 51/108 (47.22%), Query Frame = 1
Query:   37 WICDNGATKHMTHDSDFLFNYQ--ECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSL---------GKFADFGHECRCSREGLRINLK 327
            W  DNGA+ H+T+DS++  N++  E    V  A+G  LP  G G L +  +   E    +L ++  +P +S +L S           KF     EC     GL+IN K
Sbjct:   20 WFVDNGASTHITNDSNYFSNFEVFESPHGVTAANGKILPAIGKGTLKIMTKVKGEKQFKELKEIWLVPGISKNLFSTLTTHVNNKNTKFESIAEEC-----GLKINNK 122          
BLAST of mRNA_H-paniculata_contig48429.11957.1 vs. uniprot
Match: A0A6A4Z1R3_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z1R3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.070e-5
Identity = 33/110 (30.00%), Postives = 55/110 (50.00%), Query Frame = 1
Query:   22 GVTEIWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHECRCSREGLRINLKTGRVLSAE 351
            G  ++ I D+GA+ HMT   + LF+ +EC   VRLA+  R+ ++ +G   ++    S  V    T V ++P L H L+S+              +G   ++K G  +SAE
Sbjct:   92 GEEQMTIIDSGASSHMTGYYNILFDIEECQRQVRLANHQRIDVDKMGKFKIKNPNGSTCVF---TNVLYVPTLHHTLVSVPALTS-KERVTVQYKGKTCSIKVGDRVSAE 197          
BLAST of mRNA_H-paniculata_contig48429.11957.1 vs. uniprot
Match: UPI0006AB2FB3 (uncharacterized protein LOC106407804 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB2FB3)

HSP 1 Score: 52.8 bits (125), Expect = 1.670e-5
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 1
Query:   40 ICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFAD 276
            I D+GA+ HM  D   + N +   GHV +A+G+R+PI GVG L L F  DS+ +        ++P  + +LLS+ +  D
Sbjct:  419 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSVKRCTD 488          
BLAST of mRNA_H-paniculata_contig48429.11957.1 vs. uniprot
Match: A0A1J3DSB6_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DSB6_NOCCA)

HSP 1 Score: 50.1 bits (118), Expect = 2.110e-5
Identity = 27/76 (35.53%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   40 ICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGK 267
            I D+GA+ HM  D + + + +   GHV +A+G+++PI+G+G L L   FD E      +Q  ++P  + +LLS+ K
Sbjct:   33 IVDSGASHHMISDLNLIKDIKPALGHVSIANGDQIPIKGIGNLKL---FDKE------SQAFYMPSFTSNLLSVKK 99          
BLAST of mRNA_H-paniculata_contig48429.11957.1 vs. uniprot
Match: UPI00142D92C5 (uncharacterized protein LOC117131646 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D92C5)

HSP 1 Score: 52.4 bits (124), Expect = 2.190e-5
Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   40 ICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHECRCSREGLRI-NLKTGRVL 342
            I D GA+ HM  D   + + ++  G V +A+G+R+PIEGVG L L   FD +      +   ++P  + +LLS+ K   D G +     + +   +LKTGRV+
Sbjct:  264 IVDFGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 357          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48429.11957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME5.230e-935.63Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
A0A5D3DBV2_CUCME2.470e-630.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A5A7U112_CUCME4.020e-634.48Retrovirus-related Pol polyprotein from transposon... [more]
A0A225WMA1_9STRA5.000e-628.32CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A8D9D973_BRACM6.600e-633.98(field mustard) hypothetical protein (Fragment) n=... [more]
A0A4Y2HR51_ARAVE9.850e-631.48Uncharacterized protein n=2 Tax=Araneus ventricosu... [more]
A0A6A4Z1R3_9STRA1.070e-530.00Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
UPI0006AB2FB31.670e-536.71uncharacterized protein LOC106407804 n=1 Tax=Brass... [more]
A0A1J3DSB6_NOCCA2.110e-535.53Uncharacterized protein (Fragment) n=1 Tax=Noccaea... [more]
UPI00142D92C52.190e-533.98uncharacterized protein LOC117131646 n=1 Tax=Brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48429contigH-paniculata_contig48429:76..441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue3.4e-08
Seed eggNOG ortholog67593.Physo138912
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size366
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.0462358-CDS-H-paniculata_contig48429:75..4411622930434.0462358-CDS-H-paniculata_contig48429:75..441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48429 76..441 -
1691481290.4480069-CDS-H-paniculata_contig48429:75..4411691481290.4480069-CDS-H-paniculata_contig48429:75..441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48429 76..441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48429.11957.1prot_H-paniculata_contig48429.11957.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48429 76..441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48429.11957.1

>prot_H-paniculata_contig48429.11957.1 ID=prot_H-paniculata_contig48429.11957.1|Name=mRNA_H-paniculata_contig48429.11957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MLEYRKVGVTEIWICDNGATKHMTHDSDFLFNYQECDGHVRLADGNRLPI
EGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHECRCS
REGLRINLKTGRVLSAERFGSL
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mRNA from alignment at H-paniculata_contig48429:76..441-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48429.11957.1 ID=mRNA_H-paniculata_contig48429.11957.1|Name=mRNA_H-paniculata_contig48429.11957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig48429:76..441- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGAATATCGTAAGGTGGGGGTGACGGAAATCTGGATTTGTGATAA TGGTGCAACGAAACACATGACCCATGATTCAGATTTTCTTTTTAATTACC AGGAATGTGATGGGCATGTACGCCTTGCAGATGGTAATCGTCTCCCGATC GAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGGTTGT TTTGATGAAGTTAACTCAGGTTGCGTTCATTCCACTTCTCAGTCATCACC TTCTATCTCTAGGGAAATTCGCGGACTTTGGTCATGAATGTAGGTGTTCG CGCGAAGGGCTCAGAATTAACCTTAAAACAGGGAGAGTTCTGAGTGCTGA GCGATTTGGTAGCCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig48429:76..441-

>mRNA_H-paniculata_contig48429.11957.1 ID=mRNA_H-paniculata_contig48429.11957.1|Name=mRNA_H-paniculata_contig48429.11957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig48429:76..441- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGAATATCGTAAGGTGGGGGTGACGGAAATCTGGATTTGTGATAA
TGGTGCAACGAAACACATGACCCATGATTCAGATTTTCTTTTTAATTACC
AGGAATGTGATGGGCATGTACGCCTTGCAGATGGTAATCGTCTCCCGATC
GAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGGTTGT
TTTGATGAAGTTAACTCAGGTTGCGTTCATTCCACTTCTCAGTCATCACC
TTCTATCTCTAGGGAAATTCGCGGACTTTGGTCATGAATGTAGGTGTTCG
CGCGAAGGGCTCAGAATTAACCTTAAAACAGGGAGAGTTCTGAGTGCTGA
GCGATTTGGTAGCCTTATGTTAGAATATCGTAAGGTGGGGGTGACGGAAA
TCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATGATTCAGAT
TTTCTTTTTAATTACCAGGAATGTGATGGGCATGTACGCCTTGCAGATGG
TAATCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGAT
TTGACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCGTTCATTCCA
CTTCTCAGTCATCACCTTCTATCTCTAGGGAAATTCGCGGACTTTGGTCA
TGAATGTAGGTGTTCGCGCGAAGGGCTCAGAATTAACCTTAAAACAGGGA
GAGTTCTGAGTGCTGAGCGATTTGGTAGCCTT
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