mRNA_H-paniculata_contig4842.11956.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4842.11956.1 vs. uniprot
Match: A0A6H5JN80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN80_9PHAE) HSP 1 Score: 320 bits (819), Expect = 1.120e-98 Identity = 159/283 (56.18%), Postives = 200/283 (70.67%), Query Frame = 3
Query: 69 RIALCFFGIARSLRWTLGSIKARVIDVLQEAGLEVDIFVHTYDLHEVNNLRAGSMRIDYDEYAHDYSALNATRSLVTNQDDLDLAYPSPLAMTHYNWNYDDRFKAEVIRNVFRAYWSMSLAWGLLAEYAKEEDITYDAVMLMRPDVWYHIDTDLLKHRFPLPDNVVFMPNFDTTVEDDKRKNDRFSYGSMSAMRIMTNRLATFVEATADQITRKETKQPIDSEFVLGHHLHNHDISVQPVRFPVTRIRLDGSIPGPDQERVENICESGEDPVACDMVKFGFNL 917
R A+CFFG+ RSLRWTL S++ R+++VL++ G+ VD+FVHTY L EVNN RAG ++ Y Y +D+ ALN TRSLVTNQDD DL + PL+MTHYNWNY + VIRNVFRAYWSMS++WGL+AE+A YDAV+L RPDVW+H D DL PLP++ VF+P+FD + RKNDRF+YGSM+ MR++ NRLAT + A Q+T + IDSE+VLGHHL +DISVQ + +TRIRL IP D VE C SGEDP+AC MV GF
Sbjct: 84 RAAVCFFGLTRSLRWTLPSVQKRLLEVLRQ-GMAVDVFVHTYSLVEVNNNRAGETKVMYGPYVNDFLALNPTRSLVTNQDDFDLIWTDPLSMTHYNWNYPEEDAPGVIRNVFRAYWSMSMSWGLMAEHAVAGGFEYDAVVLARPDVWFHYDVDLPTRTLPLPEHTVFLPSFDAELAAQVRKNDRFAYGSMTTMRVVMNRLATLLAADTGQLTGE-----IDSEYVLGHHLRKNDISVQMLDLLLTRIRLTRDIPMYDHRLVEEACLSGEDPMACRMVDAGFKF 360
BLAST of mRNA_H-paniculata_contig4842.11956.1 vs. uniprot
Match: A0A835Z6Q8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q8_9STRA) HSP 1 Score: 182 bits (462), Expect = 1.820e-47 Identity = 109/271 (40.22%), Postives = 151/271 (55.72%), Query Frame = 3
Query: 69 RIALCFFGIARSLRWTLGSIKARVIDVLQEAGLEV--DIFVHTYDLHE-VNNLRAGSMRIDYDEYAHDYSALNATRSLVTNQDDLDLAYPSPLAMTHYNWNYDDRFKAEVIRNVFRAYWSMSLAWGLLAEYAKEEDITYDAVMLMRPDVWYHIDTDLLKHRFPLPDNVVFMPNFDTTVEDDKRKNDRFSYGSMSAMRIMTNRLATFVEATADQITRKETKQPIDSEFVLGHHLHNHDISVQPVRFPVTRIRLDGSIPGPDQERVENICESG 872
R ALCFFG+ RS+ WT+ SI+ ++ LQ AG V D+FVHTY + ++N RAG + Y + D L TR L+T+QDD D YP A+T W YD+ IRN+FRA S+SL W ++A++A E I Y V+L+RPDV Y D D+++ LP+N F+P+F + NDRF+YG SAMR NRL T V E ++SE +L HL H++SV P+ R+R G +P D V + C+ G
Sbjct: 70 RYALCFFGLTRSVAWTIDSIRHHILAPLQAAGAAVRYDVFVHTYRVDTPLDNPRAGERGVAYANHFTDVQMLRPTRYLITSQDDFDQTYPDIHAITPLKWQYDED---ATIRNIFRAQNSLSLVWSIMADHASEHKIDYAGVVLLRPDVLYLNDLDIVQLG-ELPENTTFIPSF----QSYGGYNDRFAYGRPSAMRAYCNRLDTMVSRAI------EAGASVNSEKLLVRHLRAHNVSVAPIDMTFARVRTTGGVPRKDTNLVLDACKRG 326
BLAST of mRNA_H-paniculata_contig4842.11956.1 vs. uniprot
Match: A0A836CL92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL92_9STRA) HSP 1 Score: 176 bits (445), Expect = 1.170e-45 Identity = 106/266 (39.85%), Postives = 153/266 (57.52%), Query Frame = 3
Query: 69 RIALCFFGIARSLRWTLGSIKARVIDVLQE-AGLEVDIFVHTYDLHEVNNLRAGSMRIDYDEYAHDYSALNATRSLVTNQDDLDLAYPSPLAMTHYNWNYDDRFKAEVIRNVFRAYWSMSLAWGLLAEYAKEEDITYDAVMLMRPDVWYHIDTDLLKHRFPLPDNVVFMPNFDTTVEDDKRKNDRFSYGSMSAMRIMTNRLATFVEATADQITRKETKQPIDSEFVLGHHLHNHDISVQPVRFPVTRIRLDGSIPGPDQERVENIC 863
R ALCFFG+ RSL+WTL SI+ ++ LQ A + D+FVHTY ++N RAG + + + D L+ TR L+T+QDDLD+ YP ++ W Y++ I+N+FRA S+SL+W ++A YA E I Y V+++RPDV Y D D+++ LP++ VF+ NF NDRF+YG SAMR+ +RL T V +TA R ++SE +L HHL H+I+V V RIR G +P D + + C
Sbjct: 17 RYALCFFGLIRSLQWTLDSIERHILAQLQSNATVRYDVFVHTYRAARLDNPRAGETGVAHADPIADVQRLHPTRYLITSQDDLDMVYPDVHLLSPLEWLYNEN---TTIQNIFRAQNSLSLSWAVMANYAAEHHIDYAGVVILRPDVLYLRDLDIVRQGI-LPEHTVFVANFGHYGGC----NDRFAYGHASAMRVYAHRLDTMVGSTALPAKR------VNSEQLLVHHLQAHNINVTLVDMLFARIRSTGQVPRLDMKILRRAC 268
BLAST of mRNA_H-paniculata_contig4842.11956.1 vs. uniprot
Match: A0A836CLC1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC1_9STRA) HSP 1 Score: 171 bits (433), Expect = 5.350e-44 Identity = 100/280 (35.71%), Postives = 157/280 (56.07%), Query Frame = 3
Query: 69 RIALCFFGIARSLRWTLGSIKARVIDVLQEAG-LEVDIFVHTYDLHEVNNLRAGSMRIDYDEYAHDYSALNATRSLVTNQDDLDLAYPSPLAMTHYNWNYDDRFKAEVIRNVFRAYWSMSLAWGLLAEYAKEEDITYDAVMLMRPDVWYHIDTDLLKHRFPLPDNVVFMPNFDTTVEDDKRKNDRFSYGSMSAMRIMTNRLATFVEATADQITRKETKQPIDSEFVLGHHLHNHDISVQPVRFPVTRIRLDGSIPGPDQERVENICESGEDPVACDMVKF 905
R ALCFFG+ RS++WT+ +I+ + L+ + D+FVHTY + +++N RAG + Y D L TR L+T+QDD DL YP M+ W+Y D ++N+FRA S++L W ++A++A E I YDAV+ +RPDV Y D D+ R LP+ F+ +F + NDRF+YG SAMR+ NRL + + A + +++ +SE +L HL H++SV +R+R G++P D+ V + C+ P AC +++
Sbjct: 35 RYALCFFGLTRSVQWTIQNIERHIFAPLRSNDTIRYDVFVHTYRMEKLDNPRAGEVAAVYANPNSDVQKLRPTRYLITSQDDFDLTYPDVQTMSPLQWSYPDN---TTVQNIFRAQNSLALVWSIMADFAAEHSIDYDAVVALRPDVLYLRDLDI-PQRGVLPERTAFVADF----QHYGGCNDRFAYGRPSAMRVYANRLDSMLNAALRPVGDRKS---FNSEQLLQRHLEAHNVSVVLADMLFSRVRSTGALPKQDKRLVVDACKQHL-PGACKALRW 302
BLAST of mRNA_H-paniculata_contig4842.11956.1 vs. uniprot
Match: A0A6C0HSD7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HSD7_9ZZZZ) HSP 1 Score: 98.2 bits (243), Expect = 4.380e-19 Identity = 74/262 (28.24%), Postives = 126/262 (48.09%), Query Frame = 3
Query: 69 RIALCFFGIARSLRWTLGSIKARVIDVLQEAGLEVDIFVHTYDLHEVNNLRAGSMRIDYDEYAHDYSALNATRSLVTNQDDLDLAYPSPLAMTH---YNWNYDDRFKAEVIRNVFRAYWSMSLAWGLLAEYAKEEDITYDAVMLMRPDVWYHIDTDLLKHRFPLPDNVVFMPNFDTTVEDDKRKNDRFSYGSMSAMRIMTNRLATFVEATADQITRKETKQPIDSEFVLGHHLHNHDISVQPVRFPVTRIRLDGSIPGPDQE 845
+IAL FFGI RSL++T+ SIK ++ L+E+G++ DIF+HTY ++ N+R Y+ ++Y LN + Q+++ TH +N Y+ + N A +S G + + +I YD +M +RPD Y ++ R + D + +PNF + + NDRF +M + N T D++ ++ + SE VLG ++N+D+ + V F R+R +GS D+E
Sbjct: 2 KIALAFFGITRSLKYTIKSIKRNILQHLKESGIDCDIFMHTYKINNYANIRTKEKPTSYNN--NEYKLLNPKYIQIDVQEEIKKKINMSRYRTHKDPWNTGYNS------VDNFILAQYSK----GQVVKMIDNTNINYDYIMYVRPDCLYTHKLNVQYLR-DVDDTTICIPNFH--LFGPHKFNDRFCITNMKTYKFYGN--------TFDKLLNISKQKSLHSERVLGELMNNYDLKIIRVPFIFLRVRCNGSCEDKDKE 240
BLAST of mRNA_H-paniculata_contig4842.11956.1 vs. uniprot
Match: A0A6C0AMM1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AMM1_9ZZZZ) HSP 1 Score: 94.7 bits (234), Expect = 9.790e-17 Identity = 77/269 (28.62%), Postives = 120/269 (44.61%), Query Frame = 3
Query: 69 RIALCFFGIARSLRWTLGSIKARVIDVLQEAGLEVDIFVHTYDLHEV-NNLRAGSMRIDYDEYAHDYSALNATRSLVTNQDDLDLAYPSPLAMTHYN-WNYDDRFKA---EVIRNVFRAYWSMSLAWGLLAEYAKEEDITYDAVMLMRPDVWYHIDTDLLKHRFPLPDNVVFMPNFDTTVEDDKRKNDRFSYGSMSAMRIMTNRLATFVEATADQITRKETKQPIDSEFVLGHHLHNHDISVQPVRFPVTRIRLDGSIPGPDQERVENI 860
++A+CFFG+ RSL+ TL SI+ + D L+ G+ DIF+HTY + +N RAG + D A +Y L T +V +++ + TH N W + + + N WS+ L +E AK Y ++ RPDV Y + D+ F +++PNF NDRF+ G MR+ NR D K+P+ SE L + H I + V F R+R +G G D +++ +
Sbjct: 185 KVAICFFGLTRSLKLTLDSIEKYIFDPLRLHGIRYDIFLHTYKMKTAYSNPRAGEKDLILD--ADEYKLLEPTYHMVESKEAVSKKLDLEKYRTHGNPWGKETSARPGDFSTLDNHILYLWSLKQLTKLWSE-AKSR---YSHIIYCRPDVLYQVPLDISWFSFSPKSKKIYIPNFGLCGN----VNDRFALGRPEEMRLYGNRF--------DDALAYSKKKPLASEAYLIDTMRRHRIKYEHVNFYFIRVRANGKKNGIDVSQIKTL 435
BLAST of mRNA_H-paniculata_contig4842.11956.1 vs. uniprot
Match: A0A6C0AUQ6_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0AUQ6_9ZZZZ) HSP 1 Score: 90.5 bits (223), Expect = 1.860e-16 Identity = 79/260 (30.38%), Postives = 120/260 (46.15%), Query Frame = 3
Query: 69 RIALCFFGIARSLRWTLGSIKARVIDVLQEAGLEVDIFVHTYDLHEVNNLRA--GSMRIDYDEYAHDYSALNATRSLVTNQDDLDLAYPSPLAMTHYN-WNYDDRFKAEVIRNVFRAYWSMSLAWGLLAEYAKEEDITYDAVMLMRPDVWY-HIDTDLLKHRFPLPDNVVFMPNFDT---TVEDDKRKNDRFSYGSMSAMRIMTNRLATFVEATADQITRKETKQPIDSEFVLGHHLHNHDISVQPVRFPVTRIRLDGSI 827
++AL FFGI RSL++T+ +I+ VI+ L+ G EV IF+HTY L N+R S ID DEY LN ++ NQD++ TH + WN K + N +S L E K ++ ++ +RPDV Y + T L + + N + +PNF + NDRF+ + +I +E + D P+ SE +L +L N+ I + + F RIR+DGSI
Sbjct: 2 KVALGFFGITRSLKFTIETIRENVINPLKRLGYEVKIFIHTYKLDTYKNIRTKEASDNIDNDEY----KLLNPDEFIIDNQDEVKERLNMQQYRTHRDPWNT----KYNSVDNFILGQYSKLR----LTELIKNTKDEFEYILFLRPDVKYLNKITKLFLDKVNI--NTICIPNFSLYPRKTQGFPMFNDRFAITNKYTYKIYGEVFHKLLEISKDN--------PLHSETILTKYLTNNGIEYEYIPFIFQRIRIDGSI 239
BLAST of mRNA_H-paniculata_contig4842.11956.1 vs. uniprot
Match: A0A6C0JPQ4_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JPQ4_9ZZZZ) HSP 1 Score: 84.7 bits (208), Expect = 1.590e-14 Identity = 71/258 (27.52%), Postives = 118/258 (45.74%), Query Frame = 3
Query: 66 KRIALCFFGIARSLRWTLGSIKARVIDVLQEAGLEVDIFVHTYDLHEVNNLRAG---SMRIDYDEYAHDYSALNATRSLVTNQDDLDLAYPSPLAMTHYNWNYDD-RFKAEVIRNVFRAYWSMSLAWGLLAEYAKEEDITYDAVMLMRPDVWYHIDTDLLKHRFPLPDNVVFMPNFDTTVEDDKRKNDRFSYGSMSAMRIMTNRLATFVEATADQITRKETKQPIDSEFVLGHHLHNHDISVQPVRFPVTRIRLDGSI 827
K+IA+ F+GI RSL +T+ SI+ + +VL+E + DIFVHTY+L E N RA + ID ++Y L A + NQ+++ S L + Y D + E + +S L + + + YD ++ +RPD Y D+ K + DN + +P+F + NDRF+ I N+ +++ K + S+ +LG L ++I ++F RIR DG +
Sbjct: 4 KKIAIGFYGITRSLNYTIDSIEKNIFNVLKENNFDYDIFVHTYNLDEYKNTRANEEYTKNIDNNQY----KLLKAKYLKIDNQNEVK----SMLNLESYRTKPDPWKTNYETVDFYILGKYSQYS----LTKIIENSNNNYDYILFVRPDCLYLDRLDVSKFNL-INDNTILIPSF------GHQMNDRFA--------ITNNKTYKIYGKIFEELLELSNKYELHSQTILGMILEKNNIENIKIKFNFARIRSDGKV 234
BLAST of mRNA_H-paniculata_contig4842.11956.1 vs. uniprot
Match: A0A6C0K525_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K525_9ZZZZ) HSP 1 Score: 87.8 bits (216), Expect = 4.110e-14 Identity = 76/256 (29.69%), Postives = 115/256 (44.92%), Query Frame = 3
Query: 57 QDPKRIALCFFGIARSLRWTLGSIKARVIDVLQEAGLEVDIFVHTYDLHE-VNNLRAGSMRIDYDEYAHDYSALNATRSLVTNQDDLDLAYPSPLAMTHYN-WNYDDRFKAEVIRNVFRAYWSMSLAWGLLAEYAKEEDITYDAVMLMRPDVWYHIDTDLLKHRFPLPDNVVFMPNFDTTVEDDKRKNDRFSYGSMSAMRIMTNRLATFVEATADQITRKETKQPIDSEFVLGHHLHNHDISVQPVRFPVTRIRLD 818
+D +R+A+CF+GI RSL +TL SI+ + L +A + DIF+HTYDL++ + A + ++Y D+ LN T+ ++ NQ D + N WN EV N RA WS+ L + K + Y +M RPD+ Y + +K + + + +PNF DRF+ G M+I NR D K + SE L L + I+V+ V F R R D
Sbjct: 473 KDQRRVAVCFWGIMRSLDFTLPSIQQNIFKPLDDAKIPYDIFLHTYDLNDDCSGTYASECTLPINKY--DFKRLNPTKYILENQKLADKKIGLNKYLAKGNPWNA----AIEVAYNHVRALWSLKQVTTLWSNNNKNDITPYSHIMYCRPDMTYIMP---IKPEWFVFSEEMVIPNFARHGRRGMSICDRFAIGMPDQMKIYGNRF--------DGALMYSKKYQLHSETYLAETLRMNHINVKFVPFGFIRTRAD 711
BLAST of mRNA_H-paniculata_contig4842.11956.1 vs. uniprot
Match: A0A6C0E2P7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0E2P7_9ZZZZ) HSP 1 Score: 84.7 bits (208), Expect = 2.300e-13 Identity = 72/273 (26.37%), Postives = 133/273 (48.72%), Query Frame = 3
Query: 9 NTARITTYADEPLPPRQDPKRIALCFFGIARSLRWTLGSIKARVIDVLQEAGLEVDIFVHTYDLHE-VNNLRAGSMRIDYDEYAHDYSALNATRSLVTNQDDLDLAYPSPLAMTHYNWNYDDRFKAEVIRNVFRAYWSMSLAWGLLAEYAKEEDITYDAVMLMRPDVWYHIDTDLLKHRFPLPDNVVFMPNFDTTVEDDKRKNDRFSYGSMSAMRIMTNRLATFVEATADQITRKETKQPIDSEFVLGHHLHNH-DISVQPVRFPVTRIRLDG 821
NT +I+ Y E +IAL F+GI+RSL++T+GSI+ ++I+VL+ + +F+HTY +++ +N+ + + I+YD +DY LN + ++D++ L Y YD + + RNV W++ + + + +I YD +M++RPD+ Y + DL + ++V+ +P+F NDRF + S + + N + + P SE HHL N ++ + + F R+R++G
Sbjct: 261 NTKKISEYIGELSQANYKHMKIALAFWGISRSLKYTIGSIQDKIINVLKSNQITYHVFMHTYKINKHKDNILSEEINIEYDN--NDYKLLNPHFIEIEDEDEVK----EKLRFDEYKHMYD-AWNSNY-RNVDNFIWALH-SKRKVCQLVINSEIDYDYIMILRPDMKYITEFDLA-WLSKISNDVICVPDFHVFWNI----NDRFFLMNSSNLSLFGNLFYALLNYSKTN--------PAHSESFYYHHLVNLCNLKIDYIPFHFNRVRVNG 511 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4842.11956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4842.11956.1 >prot_H-paniculata_contig4842.11956.1 ID=prot_H-paniculata_contig4842.11956.1|Name=mRNA_H-paniculata_contig4842.11956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp MRIDYDEYAHDYSALNATRSLVTNQDDLDLAYPSPLAMTHYNWNYDDRFKback to top mRNA from alignment at H-paniculata_contig4842:3056..13691+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4842.11956.1 ID=mRNA_H-paniculata_contig4842.11956.1|Name=mRNA_H-paniculata_contig4842.11956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10636bp|location=Sequence derived from alignment at H-paniculata_contig4842:3056..13691+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4842:3056..13691+ >mRNA_H-paniculata_contig4842.11956.1 ID=mRNA_H-paniculata_contig4842.11956.1|Name=mRNA_H-paniculata_contig4842.11956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig4842:3056..13691+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |