mRNA_H-paniculata_contig48394.11953.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48394.11953.1
Unique NamemRNA_H-paniculata_contig48394.11953.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig48394.11953.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.020e-8
Identity = 29/77 (37.66%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 NGQLAWFGLIDKYQNSSKQRRRILMRQLDGTTMKQNQDPDVFLARVFQLRDELAHMGEEVSEERLTDIVIEGLTDDY 231
            +G   W  L  K+Q + + RRR L R+L+  TM+   DPD+F+  V+ L ++L  +G  V++E+L DI+++GL  +Y
Sbjct:  231 SGLAVWKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEY 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48394.11953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE2.020e-837.66Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48394contigH-paniculata_contig48394:822..1163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930433.4976425-CDS-H-paniculata_contig48394:821..11631622930433.4976425-CDS-H-paniculata_contig48394:821..1163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48394 822..1163 -
1691481290.2861972-CDS-H-paniculata_contig48394:821..11631691481290.2861972-CDS-H-paniculata_contig48394:821..1163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48394 822..1163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48394.11953.1prot_H-paniculata_contig48394.11953.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48394 822..1163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48394.11953.1

>prot_H-paniculata_contig48394.11953.1 ID=prot_H-paniculata_contig48394.11953.1|Name=mRNA_H-paniculata_contig48394.11953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
NGQLAWFGLIDKYQNSSKQRRRILMRQLDGTTMKQNQDPDVFLARVFQLR
DELAHMGEEVSEERLTDIVIEGLTDDYEQVKYNAERDPEFSLSEIEVTLR
NMFANRVAREGSSR
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mRNA from alignment at H-paniculata_contig48394:822..1163-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48394.11953.1 ID=mRNA_H-paniculata_contig48394.11953.1|Name=mRNA_H-paniculata_contig48394.11953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig48394:822..1163- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGGCAATTAGCGTGGTTTGGCCTGATTGACAAGTATCAGAATTCATC
CAAGCAGAGACGCCGTATATTGATGCGGCAGCTTGACGGGACAACAATGA
AGCAAAACCAGGACCCCGATGTATTTTTGGCCCGTGTTTTTCAGCTCAGA
GATGAGCTAGCACACATGGGGGAAGAAGTATCGGAAGAACGATTGACCGA
TATCGTTATAGAAGGACTTACTGACGATTATGAGCAAGTGAAATATAATG
CAGAGCGCGACCCCGAGTTTAGCTTGAGCGAAATTGAGGTCACTCTGCGT
AATATGTTTGCGAATCGTGTAGCACGAGAGGGTTCATCACGA
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Coding sequence (CDS) from alignment at H-paniculata_contig48394:822..1163-

>mRNA_H-paniculata_contig48394.11953.1 ID=mRNA_H-paniculata_contig48394.11953.1|Name=mRNA_H-paniculata_contig48394.11953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig48394:822..1163- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGGCAATTAGCGTGGTTTGGCCTGATTGACAAGTATCAGAATTCATC
CAAGCAGAGACGCCGTATATTGATGCGGCAGCTTGACGGGACAACAATGA
AGCAAAACCAGGACCCCGATGTATTTTTGGCCCGTGTTTTTCAGCTCAGA
GATGAGCTAGCACACATGGGGGAAGAAGTATCGGAAGAACGATTGACCGA
TATCGTTATAGAAGGACTTACTGACGATTATGAGCAAGTGAAATATAATG
CAGAGCGCGACCCCGAGTTTAGCTTGAGCGAAATTGAGGTCACTCTGCGT
AATATGTTTGCGAATCGTGTAGCACGAGAGGGTTCATCACGAAACGGGCA
ATTAGCGTGGTTTGGCCTGATTGACAAGTATCAGAATTCATCCAAGCAGA
GACGCCGTATATTGATGCGGCAGCTTGACGGGACAACAATGAAGCAAAAC
CAGGACCCCGATGTATTTTTGGCCCGTGTTTTTCAGCTCAGAGATGAGCT
AGCACACATGGGGGAAGAAGTATCGGAAGAACGATTGACCGATATCGTTA
TAGAAGGACTTACTGACGATTATGAGCAAGTGAAATATAATGCAGAGCGC
GACCCCGAGTTTAGCTTGAGCGAAATTGAGGTCACTCTGCGTAATATGTT
TGCGAATCGTGTAGCACGAGAGGGTTCATCACGA
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