mRNA_H-paniculata_contig48385.11951.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48385.11951.1
Unique NamemRNA_H-paniculata_contig48385.11951.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48385.11951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48385contigH-paniculata_contig48385:221..858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size271
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48385.11951.1prot_H-paniculata_contig48385.11951.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48385 246..858 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930433.2932885-UTR-H-paniculata_contig48385:220..2451622930433.2932885-UTR-H-paniculata_contig48385:220..245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48385 221..245 +
1691481290.2015996-UTR-H-paniculata_contig48385:220..2451691481290.2015996-UTR-H-paniculata_contig48385:220..245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48385 221..245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930433.3160377-CDS-H-paniculata_contig48385:245..4061622930433.3160377-CDS-H-paniculata_contig48385:245..406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48385 246..406 +
1691481290.2148116-CDS-H-paniculata_contig48385:245..4061691481290.2148116-CDS-H-paniculata_contig48385:245..406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48385 246..406 +
1622930433.3316016-CDS-H-paniculata_contig48385:773..8581622930433.3316016-CDS-H-paniculata_contig48385:773..858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48385 774..858 +
1691481290.222796-CDS-H-paniculata_contig48385:773..8581691481290.222796-CDS-H-paniculata_contig48385:773..858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48385 774..858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48385.11951.1

>prot_H-paniculata_contig48385.11951.1 ID=prot_H-paniculata_contig48385.11951.1|Name=mRNA_H-paniculata_contig48385.11951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MSQCHGGCQRPRRQCSRYALECHGQWQRYCGALLPIYTRQQSPASTEIAV
AHPRYRCRGKKTRSRTRWLLRQQNPPFWRGA*
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mRNA from alignment at H-paniculata_contig48385:221..858+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48385.11951.1 ID=mRNA_H-paniculata_contig48385.11951.1|Name=mRNA_H-paniculata_contig48385.11951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=638bp|location=Sequence derived from alignment at H-paniculata_contig48385:221..858+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAAGAATACGCTTTCGAAAACGTAAATGTCGCAATGCCACGGCGGTTGTC
AACGACCCCGTCGCCAGTGTTCGCGTTACGCGCTTGAGTGTCACGGGCAA
TGGCAACGGTATTGCGGAGCACTTCTGCCGATCTACACGCGGCAACAGTC
GCCGGCGTCCACGGAGATTGCAGTAGCTCATCCCAGGTATTCGGGAGAAA
ATGTCAAGAGGCGTGTGCATTTCGGGGGTGGAAGGGGTCCGTTGATCGAC
CCATGTGCGTTTGTACGGTTGTAGCACCGGGTATAGTTTTTCCAGGGTGC
AACAAACGCTGAGACATTCGTTGCTGGTGTGGTAATGAAACCGGGTGCAT
CTTGTTTCCCAATTTATGACAAGATAATTAGCCAACCTCCGCACGGAAGC
GGTATAATTGTTGCGATAGTTTCATTTCATCTTCCTTTTCGTCCCATTTG
GTTCTGCAGCAGGTTTCTCCATGCGCAACACTACTCCTAAGCTCGCAACT
GTCGCCCCCACGCCTATCGTCTTCTTGGTTATATTGAACCCGCAATTATA
TAGGTACCGTTGCCGCGGAAAGAAGACACGTTCGAGAACCAGGTGGCTGC
TACGCCAACAAAATCCTCCCTTTTGGCGTGGTGCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig48385:221..858+

>mRNA_H-paniculata_contig48385.11951.1 ID=mRNA_H-paniculata_contig48385.11951.1|Name=mRNA_H-paniculata_contig48385.11951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig48385:221..858+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGCAATGCCACGGCGGTTGTCAACGACCCCGTCGCCAGTGTTCGCG
TTACGCGCTTGAGTGTCACGGGCAATGGCAACGGTATTGCGGAGCACTTC
TGCCGATCTACACGCGGCAACAGTCGCCGGCGTCCACGGAGATTGCAGTA
GCTCATCCCAGATGTCGCAATGCCACGGCGGTTGTCAACGACCCCGTCGC
CAGTGTTCGCGTTACGCGCTTGAGTGTCACGGGCAATGGCAACGGTATTG
CGGAGCACTTCTGCCGATCTACACGCGGCAACAGTCGCCGGCGTCCACGG
AGATTGCAGTAGCTCATCCCAGGTACCGTTGCCGCGGAAAGAAGACACGT
TCGAGAACCAGGTGGCTGCTACGCCAACAAAATCCTCCCTTTTGGCGTGG
TGCGTAGGTACCGTTGCCGCGGAAAGAAGACACGTTCGAGAACCAGGTGG
CTGCTACGCCAACAAAATCCTCCCTTTTGGCGTGGTGCGTAG
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