mRNA_H-paniculata_contig48380.11949.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig48380.11949.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 9.860e-9 Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 4 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYRKMLVWTKDRGEIHKFSLSGVAHVPGLDTNLFSLQIVVNQGLN 258
W+ DSGATAHMTP E +FDY+ +++ VT+A+G+ + + G + + D I V H+PGLD L S+ + +GLN
Sbjct: 160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLN 242
BLAST of mRNA_H-paniculata_contig48380.11949.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.240e-7 Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = 1
Query: 4 WVADSGATAHMTPSNELMFDYE-TCSNLFVTVANGETLPIEGYRKMLVWTKDRGEIHKFSLSG-------VAHVPGLDTNLFSLQIVVNQGL 255
W+ DSGAT+HMTP E +FD E T S++ VT+A+G+ L + G +G + SL+G V ++PGLD L S+ + +GL
Sbjct: 155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAG----------QGTVRLTSLNGKHIKMMEVLYIPGLDRRLLSVGKLAERGL 236
BLAST of mRNA_H-paniculata_contig48380.11949.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.630e-7 Identity = 31/86 (36.05%), Postives = 49/86 (56.98%), Query Frame = 1
Query: 4 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYRKMLVWTKDRGEIHKFSLSGVAHVPGLDTNLFSLQIVVNQGLN 258
W+ DSGATAHMTP +F+YE N+ VT+A+G+ + + G + + D I + V H+PGLD L S+ + +G++
Sbjct: 263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMS 345
BLAST of mRNA_H-paniculata_contig48380.11949.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 2.920e-7 Identity = 29/86 (33.72%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 4 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYRKMLVWTKDRGEIHKFSLSGVAHVPGLDTNLFSLQIVVNQGLN 258
W+ DSGATAHMTP + +F+Y S +++VT+A+G+ + + G + + D I V ++PGLD L S+ + +G++
Sbjct: 245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIRMVE---VLYIPGLDRRLLSVGKLAERGMS 327
BLAST of mRNA_H-paniculata_contig48380.11949.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 4.160e-7 Identity = 30/86 (34.88%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 4 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYRKMLVWTKDRGEIHKFSLSGVAHVPGLDTNLFSLQIVVNQGLN 258
W+ DSGATAHMTP +F+Y+ SN+ VT+A+G+ + + G + + D I + V ++PGLD L S++ + +G++
Sbjct: 266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRI---KMIDVLYIPGLDRQLLSVRRLAERGMS 348
BLAST of mRNA_H-paniculata_contig48380.11949.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 5.910e-7 Identity = 30/86 (34.88%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 4 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYRKMLVWTKDRGEIHKFSLSGVAHVPGLDTNLFSLQIVVNQGLN 258
W+ DSGATAHMTP +F+Y+ SN+ VT+A+G+ + + G + + D I + V ++PGLD L S+ + +G++
Sbjct: 242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRI---KMIDVLYIPGLDRQLLSVSRLAERGMS 324
BLAST of mRNA_H-paniculata_contig48380.11949.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE) HSP 1 Score: 54.7 bits (130), Expect = 1.110e-6 Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = 1
Query: 4 WVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYRKMLVWTKDRG-EIHKFSLSGVAHVPGLDTNLFSLQIVVNQGLN 258
W+ DSGA+AHMT +E ++T+A+G+ I G ++ D E+ + +SGV +VPGL TNL S++ + + L+
Sbjct: 275 WIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLD 360
BLAST of mRNA_H-paniculata_contig48380.11949.1 vs. uniprot
Match: A0A4Y2F840_ARAVE (Uncharacterized protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2F840_ARAVE) HSP 1 Score: 52.4 bits (124), Expect = 1.440e-6 Identity = 32/84 (38.10%), Postives = 44/84 (52.38%), Query Frame = 1
Query: 4 WVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYRKMLVWTKDRGEIHKFSLSGVAHVPGLDTNLFSLQIVVNQG 252
W+ADSGA+ HMTP E YE+ S+ V + N ET+ G + V G+ LS V VP + NLFS+ V++G
Sbjct: 12 WLADSGASVHMTPQKEYFLSYESFSSPKDVKIGNNETMFAFGLGTVKVRMLVSGKWENNHLSDVWFVPEVSRNLFSVSRAVDKG 95
BLAST of mRNA_H-paniculata_contig48380.11949.1 vs. uniprot
Match: A0A6A3IEW9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IEW9_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 2.020e-6 Identity = 29/86 (33.72%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 4 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYRKMLVWTKDRGEIHKFSLSGVAHVPGLDTNLFSLQIVVNQGLN 258
W+ DSGAT HMTP +F+Y+ SN+ VT+A+G+ + + G + + D I + V ++PGLD L S+ + ++G++
Sbjct: 266 WLIDSGATVHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRI---KMIDVLYIPGLDRQLLSVSRLADRGVS 348
BLAST of mRNA_H-paniculata_contig48380.11949.1 vs. uniprot
Match: A0A6A3KTF1_9STRA (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KTF1_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 2.040e-6 Identity = 29/86 (33.72%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 4 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYRKMLVWTKDRGEIHKFSLSGVAHVPGLDTNLFSLQIVVNQGLN 258
W+ DSGAT HMTP +F+Y+ SN+ VT+A+G+ + + G + + D I + V ++PGLD L S+ + ++G++
Sbjct: 266 WLIDSGATVHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRI---KMIDVLYIPGLDRQLLSVSRLADRGVS 348 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48380.11949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig48380.11949.1 >prot_H-paniculata_contig48380.11949.1 ID=prot_H-paniculata_contig48380.11949.1|Name=mRNA_H-paniculata_contig48380.11949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp FWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYRKMLVWTback to top mRNA from alignment at H-paniculata_contig48380:641..901- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig48380.11949.1 ID=mRNA_H-paniculata_contig48380.11949.1|Name=mRNA_H-paniculata_contig48380.11949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at H-paniculata_contig48380:641..901- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig48380:641..901- >mRNA_H-paniculata_contig48380.11949.1 ID=mRNA_H-paniculata_contig48380.11949.1|Name=mRNA_H-paniculata_contig48380.11949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig48380:641..901- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |