prot_H-paniculata_contig4836.11945.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4836.11945.1
Unique Nameprot_H-paniculata_contig4836.11945.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length689
Homology
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 8.660e-111
Identity = 351/703 (49.93%), Postives = 399/703 (56.76%), Query Frame = 0
Query:    1 LDNLQRSIQPRLPS-------PVQGMFFNASYSASQVQAHAQAQGRAQAAEIETLPAEEVLRRLAQHGAGNMGGLNRDVGRHWAVG---GEEEMRLRNSLEALAITDLQRRLEEEGLPVPRSWAVLKPKADIAKGSQELVFEGSGGAGGETAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGTDIRKLLKVSDTIRVGVNEEDNEATVEALSEGSATLATKWVAGDIKAGRVYRFSMSSRKKPYVDLLVAMDKATKNTDTVHEAGFSTIYKAMAGEPVSCPICMCQVVRPTVTKCSHMFCRECISRELERVPT-NASGSHAPKCPICRRPTKGSEMMEIQTLSEVEEAMALDAGTTSTSGGKTSSADSXXXXXXXXXXDATRTGSSFTSESGAAPVATAEGEQPRSQRPRVSDEGALTAPTVSCPSPSLHAFSESLEPCAQVPVGGATPNGPSSSIDAAAAATVGXXXXXXXXXXXXXXGGITDPSNMFSSQPSSAAGAAVTRRSVVQAGSRTGNXXXXXXXXXXXXXXXXXXXXXXXXXASGSSLARD---SGRSLVIPQFLFTPAAAEVISATPDVPNSSPSSVKIDEMMGDMRLSLNTDPSSKFVVFSQYPQVVDRASAILQSRGYLTVCVVGTRGRVERSNAVASFTNDPSVKVILLTTGSAAAG 689
            LD L+RSIQ   P        PV GM   A   ASQ+QA+ QA+ +A+A  IETLPAEEVLRRLAQ GAGNMGGLNR+ GR    G   G  E+ LR+SL+A+ ++ LQ RLEEEGLPVPRSWAVLKPKADI  GS +L F                                                XXXXXXXXXXXXXXXXXXXXX       D+RKLLKVSDTIRVGVN EDNEAT+E + E SATLA +W  G +KAG VYRFS S+R+KPYVDLLVA DKA K+T+ V  AGFS IYKAMAGEPVSCPICMC VVRPTVTKC+H+FCRECISREL+R P          KCPICRR  KGSEMME+QTLSEVEEAMA+DA     S    SS D+  XXXXXXXX                                                                                       XXXXXXXXX     G +   SN          G                 XXXXXXXXXXXXXXXXXXXXXXXXX        +   +G SLVIP F FTP A     +      SS SSVK+D ++ D+  +L  DP++KFV+FSQYPQVVDRA  +L +RG  +  +VG R RVERS+AV+SFTNDPS+KVILLTTGSAAAG
Sbjct:  751 LDMLKRSIQVVAPVQPLWQWLPVGGMAGPAPM-ASQLQANVQAELKARADAIETLPAEEVLRRLAQKGAGNMGGLNRNRGRGTVTGPSAGRREITLRDSLQAMPLSQLQHRLEEEGLPVPRSWAVLKPKADIVTGSVDLRF--------------------GVAPPPALLPAAPSPPSGSVAEGDGGAEXXXXXXXXXXXXXXXXXXXXXDEGQADFDVRKLLKVSDTIRVGVNSEDNEATIEDIGERSATLACEWSEGAVKAGSVYRFSTSTRRKPYVDLLVASDKAKKDTE-VQVAGFSAIYKAMAGEPVSCPICMCSVVRPTVTKCAHLFCRECISRELQRTPALGMIQLPQAKCPICRRTMKGSEMMELQTLSEVEEAMAIDAS----SAADNSSGDAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSNGGSVAASSN-------ERGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGVAGPSLVIPTFRFTPTATATFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLSARGIRSTSIVGGRTRVERSSAVSSFTNDPSIKVILLTTGSAAAG 1420          
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Match: K8YSV3_NANGC (Chromatin remodeling complex subunit (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSV3_NANGC)

HSP 1 Score: 115 bits (288), Expect = 6.690e-26
Identity = 59/167 (35.33%), Postives = 92/167 (55.09%), Query Frame = 0
Query:  209 IRKLLKVSDTIRVGVNEEDNEATVEAL------SEGSATLATKWVAGDIKAGRVYRFSMSSRKKPYVDLLVAMDKATKN-TDTVHEAGFSTIYKAMAGEPVSCPICMCQVVRPTVTKCSHMFCRECISRELERVPTNAS--------GSHAPKCPICRRPTKGSEMM 360
            + +L+   D +R+G+N+ED EA VEA+      S G   L   W   D +   V++   ++RKK Y DLL+A +K  K  TD +HEAGF++I+  + G  +SCPIC+C V  PTVT+C H++C+ CI  ++E                +   +C +CR+P     +M
Sbjct:   22 VDELVVPGDVLRIGLNDEDFEARVEAVDVAAGGSRGEVRLEGAWACEDQRKALVFKRGPATRKKAYADLLLAKEKEQKGMTDQLHEAGFASIFAVLEGGDLSCPICLCTVSEPTVTQCCHVYCQSCILAQIEEAQKQHELHGGYGGLANLGTRCAVCRKPISQKSLM 188          
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Match: A0A835YV89_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV89_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.090e-24
Identity = 67/186 (36.02%), Postives = 99/186 (53.23%), Query Frame = 0
Query:  219 IRVGVNEEDNEATVEALSEGSATLATKWVAGDIKA------------------------GRVYRFSMSSRKKPYVDLLVAMDKATKNTDT-------VHEAGFSTIYKAMAGEPVSCPICMCQVVRPTVTKCSHMFCRECISRELE---RVPTNASGSHAPKCPICRRPTKGSEMMEIQTLSEVEE 370
            +R+G N+ D EA + ++S  +ATL   W    +                          G +++ +++SRK+PY++LL+A ++  + T         +H AGF T+YKAMAG+ V CPIC+  VVRP VT C H++CRECI  EL+     PT     H PKCP+CRR     ++ E+Q L   EE
Sbjct:   57 VRIGTNDADAEAQLASVSGDTATLTADWPGSAVTKVHLTVMHIXXXXXXXXXXXXXXXKGAIWKHAVASRKQPYIELLLASEREKRVTGXXXXXSGGIHTAGFQTVYKAMAGDEVHCPICLGSVVRPCVTMCVHVYCRECIGAELDIRLHQPT-----HVPKCPLCRRDVNPGDVCELQ-LDTTEE 236          
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Match: A0A6H5JHY1_9PHAE (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY1_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.470e-24
Identity = 73/141 (51.77%), Postives = 93/141 (65.96%), Query Frame = 0
Query:  573 SGRSLVIPQFLFTPAA--AEVISATPD---------VPN-------------SSPSSVKIDEMMGDMRLSLNTDPSSKFVVFSQYPQVVDRASAILQSRGYLTVCVVGTRGRVERSNAVASFTNDPSVKVILLTTGSAAAG 689
            +G SLVIP F FTP A  A++  A P          VP+             SS SSVK+D ++ D+  +L  DP++KFV+FSQYPQVVDRA  +L +RG  +  +VG R RVERS+AV+SFTNDPS++VILLTTGSAAAG
Sbjct:  185 TGPSLVIPTFRFTPTATAAQLSGAIPPPVMFPRDNTVPSLEQTFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLSARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAG 325          
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Match: W1NWQ5_AMBTC (Uncharacterized protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NWQ5_AMBTC)

HSP 1 Score: 60.5 bits (145), Expect = 3.030e-6
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 0
Query:  302 VSCPICMCQVV--RPTVTKCSHMFCRECISRELERVPTNASGSHAPKCPICRRPTKGSEMMEI 362
            + CPIC+  +    PT+T+C+H+FCR CI   L   PTN      P+CPICR P   S++  +
Sbjct:   36 LDCPICLSPIADAHPTITRCTHLFCRPCILTSLRHHPTN------PRCPICRTPLSNSDLFSL 92          
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Match: UPI0005D3FA09 (putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D3FA09)

HSP 1 Score: 60.5 bits (145), Expect = 1.060e-5
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 0
Query:  302 VSCPICMCQVV--RPTVTKCSHMFCRECISRELERVPTNASGSHAPKCPICRRPTKGSEMMEI 362
            + CPIC+  +    PT+T+C+H+FCR CI   L   PTN      P+CPICR P   S++  +
Sbjct:  672 LDCPICLSPIADAHPTITRCTHLFCRPCILTSLRHHPTN------PRCPICRTPLSNSDLFSL 728          
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Match: A0A4D9D770_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D770_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.710e-5
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 0
Query:  605 SVKIDEMMGDMRLSLNTDPSSKFVVFSQYPQVVDRASAILQSRGYLTVCVVGTRGRVERSNAVASFTNDPSVKVILLTTGSAAAG 689
            S K+  ++G +  +L++DPS+KFVVFSQ+P         L   G+  V V       +R  AV +F++DP VKVIL+  G  AAG
Sbjct:  592 SAKMQALVGILESTLSSDPSAKFVVFSQFPFTT--VKPCLDQHGFACVSVTAQCKMADRQQAVGAFSSDPDVKVILVGMGVGAAG 674          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G2K8_ECTSI8.660e-11149.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K8YSV3_NANGC6.690e-2635.33Chromatin remodeling complex subunit (Fragment) n=... [more]
A0A835YV89_9STRA1.090e-2436.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JHY1_9PHAE5.470e-2451.77Helicase C-terminal domain-containing protein n=1 ... [more]
W1NWQ5_AMBTC3.030e-641.27Uncharacterized protein n=1 Tax=Amborella trichopo... [more]
UPI0005D3FA091.060e-541.27putative SWI/SNF-related matrix-associated actin-d... [more]
A0A4D9D770_9STRA1.710e-540.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 304..350
e-value: 8.2E-8
score: 42.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 304..351
score: 12.283
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 304..348
e-value: 1.8E-7
score: 31.1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 268..373
e-value: 5.0E-15
score: 57.1
NoneNo IPR availableGENE3D3.40.50.300coord: 591..689
e-value: 2.1E-10
score: 42.1
NoneNo IPR availablePANTHERPTHR45626:SF17HELICASE-LIKE TRANSCRIPTION FACTORcoord: 281..363
NoneNo IPR availablePANTHERPTHR45626FAMILY NOT NAMEDcoord: 602..688
NoneNo IPR availablePANTHERPTHR45626:SF17HELICASE-LIKE TRANSCRIPTION FACTORcoord: 602..688
NoneNo IPR availablePANTHERPTHR45626FAMILY NOT NAMEDcoord: 281..363
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 294..354
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 319..328
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 617..689

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4836contigH-paniculata_contig4836:3375..14733 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4836.11945.1mRNA_H-paniculata_contig4836.11945.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4836 3375..14733 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4836.11945.1 ID=prot_H-paniculata_contig4836.11945.1|Name=mRNA_H-paniculata_contig4836.11945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=689bp
LDNLQRSIQPRLPSPVQGMFFNASYSASQVQAHAQAQGRAQAAEIETLPA
EEVLRRLAQHGAGNMGGLNRDVGRHWAVGGEEEMRLRNSLEALAITDLQR
RLEEEGLPVPRSWAVLKPKADIAKGSQELVFEGSGGAGGETAGAGAGAGV
ADMDLMEDDPESRSGFKGKGKGKGKGKLKRKLPTGGGGGDGGSDGSGGGG
GGFGRGTDIRKLLKVSDTIRVGVNEEDNEATVEALSEGSATLATKWVAGD
IKAGRVYRFSMSSRKKPYVDLLVAMDKATKNTDTVHEAGFSTIYKAMAGE
PVSCPICMCQVVRPTVTKCSHMFCRECISRELERVPTNASGSHAPKCPIC
RRPTKGSEMMEIQTLSEVEEAMALDAGTTSTSGGKTSSADSSSSGDERGS
ADATRTGSSFTSESGAAPVATAEGEQPRSQRPRVSDEGALTAPTVSCPSP
SLHAFSESLEPCAQVPVGGATPNGPSSSIDAAAAATVGASRRLGGAAGAG
GEGGITDPSNMFSSQPSSAAGAAVTRRSVVQAGSRTGNGTGAAGAGVGSW
AGAGAGAGAAAMAASGSSLARDSGRSLVIPQFLFTPAAAEVISATPDVPN
SSPSSVKIDEMMGDMRLSLNTDPSSKFVVFSQYPQVVDRASAILQSRGYL
TVCVVGTRGRVERSNAVASFTNDPSVKVILLTTGSAAAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR027370Znf-RING_LisH
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR027417P-loop_NTPase