mRNA_H-paniculata_contig4836.11945.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI) HSP 1 Score: 377 bits (968), Expect = 8.660e-111 Identity = 351/703 (49.93%), Postives = 399/703 (56.76%), Query Frame = 1
Query: 1 LDNLQRSIQPRLPS-------PVQGMFFNASYSASQVQAHAQAQGRAQAAEIETLPAEEVLRRLAQHGAGNMGGLNRDVGRHWAVG---GEEEMRLRNSLEALAITDLQRRLEEEGLPVPRSWAVLKPKADIAKGSQELVFEGSGGAGGETAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGTDIRKLLKVSDTIRVGVNEEDNEATVEALSEGSATLATKWVAGDIKAGRVYRFSMSSRKKPYVDLLVAMDKATKNTDTVHEAGFSTIYKAMAGEPVSCPICMCQVVRPTVTKCSHMFCRECISRELERVPT-NASGSHAPKCPICRRPTKGSEMMEIQTLSEVEEAMALDAGTTSTSGGKTSSADSXXXXXXXXXXDATRTGSSFTSESGAAPVATAEGEQPRSQRPRVSDEGALTAPTVSCPSPSLHAFSESLEPCAQVPVGGATPNGPSSSIDAAAAATVGXXXXXXXXXXXXXXGGITDPSNMFSSQPSSAAGAAVTRRSVVQAGSRTGNXXXXXXXXXXXXXXXXXXXXXXXXXASGSSLARD---SGRSLVIPQFLFTPAAAEVISATPDVPNSSPSSVKIDEMMGDMRLSLNTDPSSKFVVFSQYPQVVDRASAILQSRGYLTVCVVGTRGRVERSNAVASFTNDPSVKVILLTTGSAAAG 2067
LD L+RSIQ P PV GM A ASQ+QA+ QA+ +A+A IETLPAEEVLRRLAQ GAGNMGGLNR+ GR G G E+ LR+SL+A+ ++ LQ RLEEEGLPVPRSWAVLKPKADI GS +L F XXXXXXXXXXXXXXXXXXXXX D+RKLLKVSDTIRVGVN EDNEAT+E + E SATLA +W G +KAG VYRFS S+R+KPYVDLLVA DKA K+T+ V AGFS IYKAMAGEPVSCPICMC VVRPTVTKC+H+FCRECISREL+R P KCPICRR KGSEMME+QTLSEVEEAMA+DA S SS D+ XXXXXXXX XXXXXXXXX G + SN G XXXXXXXXXXXXXXXXXXXXXXXXX + +G SLVIP F FTP A + SS SSVK+D ++ D+ +L DP++KFV+FSQYPQVVDRA +L +RG + +VG R RVERS+AV+SFTNDPS+KVILLTTGSAAAG
Sbjct: 751 LDMLKRSIQVVAPVQPLWQWLPVGGMAGPAPM-ASQLQANVQAELKARADAIETLPAEEVLRRLAQKGAGNMGGLNRNRGRGTVTGPSAGRREITLRDSLQAMPLSQLQHRLEEEGLPVPRSWAVLKPKADIVTGSVDLRF--------------------GVAPPPALLPAAPSPPSGSVAEGDGGAEXXXXXXXXXXXXXXXXXXXXXDEGQADFDVRKLLKVSDTIRVGVNSEDNEATIEDIGERSATLACEWSEGAVKAGSVYRFSTSTRRKPYVDLLVASDKAKKDTE-VQVAGFSAIYKAMAGEPVSCPICMCSVVRPTVTKCAHLFCRECISRELQRTPALGMIQLPQAKCPICRRTMKGSEMMELQTLSEVEEAMAIDAS----SAADNSSGDAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSNGGSVAASSN-------ERGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGVAGPSLVIPTFRFTPTATATFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLSARGIRSTSIVGGRTRVERSSAVSSFTNDPSIKVILLTTGSAAAG 1420
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Match: K8YSV3_NANGC (Chromatin remodeling complex subunit (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSV3_NANGC) HSP 1 Score: 115 bits (288), Expect = 6.690e-26 Identity = 59/167 (35.33%), Postives = 92/167 (55.09%), Query Frame = 1
Query: 625 IRKLLKVSDTIRVGVNEEDNEATVEAL------SEGSATLATKWVAGDIKAGRVYRFSMSSRKKPYVDLLVAMDKATKN-TDTVHEAGFSTIYKAMAGEPVSCPICMCQVVRPTVTKCSHMFCRECISRELERVPTNAS--------GSHAPKCPICRRPTKGSEMM 1080
+ +L+ D +R+G+N+ED EA VEA+ S G L W D + V++ ++RKK Y DLL+A +K K TD +HEAGF++I+ + G +SCPIC+C V PTVT+C H++C+ CI ++E + +C +CR+P +M
Sbjct: 22 VDELVVPGDVLRIGLNDEDFEARVEAVDVAAGGSRGEVRLEGAWACEDQRKALVFKRGPATRKKAYADLLLAKEKEQKGMTDQLHEAGFASIFAVLEGGDLSCPICLCTVSEPTVTQCCHVYCQSCILAQIEEAQKQHELHGGYGGLANLGTRCAVCRKPISQKSLM 188
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Match: A0A835YV89_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV89_9STRA) HSP 1 Score: 120 bits (301), Expect = 1.090e-24 Identity = 67/186 (36.02%), Postives = 99/186 (53.23%), Query Frame = 1
Query: 655 IRVGVNEEDNEATVEALSEGSATLATKWVAGDIKA------------------------GRVYRFSMSSRKKPYVDLLVAMDKATKNTDT-------VHEAGFSTIYKAMAGEPVSCPICMCQVVRPTVTKCSHMFCRECISRELE---RVPTNASGSHAPKCPICRRPTKGSEMMEIQTLSEVEE 1110
+R+G N+ D EA + ++S +ATL W + G +++ +++SRK+PY++LL+A ++ + T +H AGF T+YKAMAG+ V CPIC+ VVRP VT C H++CRECI EL+ PT H PKCP+CRR ++ E+Q L EE
Sbjct: 57 VRIGTNDADAEAQLASVSGDTATLTADWPGSAVTKVHLTVMHIXXXXXXXXXXXXXXXKGAIWKHAVASRKQPYIELLLASEREKRVTGXXXXXSGGIHTAGFQTVYKAMAGDEVHCPICLGSVVRPCVTMCVHVYCRECIGAELDIRLHQPT-----HVPKCPLCRRDVNPGDVCELQ-LDTTEE 236
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Match: A0A6H5JHY1_9PHAE (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY1_9PHAE) HSP 1 Score: 117 bits (294), Expect = 5.470e-24 Identity = 73/141 (51.77%), Postives = 93/141 (65.96%), Query Frame = 1
Query: 1717 SGRSLVIPQFLFTPAA--AEVISATPD---------VPN-------------SSPSSVKIDEMMGDMRLSLNTDPSSKFVVFSQYPQVVDRASAILQSRGYLTVCVVGTRGRVERSNAVASFTNDPSVKVILLTTGSAAAG 2067
+G SLVIP F FTP A A++ A P VP+ SS SSVK+D ++ D+ +L DP++KFV+FSQYPQVVDRA +L +RG + +VG R RVERS+AV+SFTNDPS++VILLTTGSAAAG
Sbjct: 185 TGPSLVIPTFRFTPTATAAQLSGAIPPPVMFPRDNTVPSLEQTFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLSARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAG 325
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Match: W1NWQ5_AMBTC (Uncharacterized protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NWQ5_AMBTC) HSP 1 Score: 60.5 bits (145), Expect = 3.030e-6 Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 1
Query: 904 VSCPICMCQVV--RPTVTKCSHMFCRECISRELERVPTNASGSHAPKCPICRRPTKGSEMMEI 1086
+ CPIC+ + PT+T+C+H+FCR CI L PTN P+CPICR P S++ +
Sbjct: 36 LDCPICLSPIADAHPTITRCTHLFCRPCILTSLRHHPTN------PRCPICRTPLSNSDLFSL 92
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Match: UPI0005D3FA09 (putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D3FA09) HSP 1 Score: 60.5 bits (145), Expect = 1.060e-5 Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 1
Query: 904 VSCPICMCQVV--RPTVTKCSHMFCRECISRELERVPTNASGSHAPKCPICRRPTKGSEMMEI 1086
+ CPIC+ + PT+T+C+H+FCR CI L PTN P+CPICR P S++ +
Sbjct: 672 LDCPICLSPIADAHPTITRCTHLFCRPCILTSLRHHPTN------PRCPICRTPLSNSDLFSL 728
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Match: A0A4D9D770_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D770_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.710e-5 Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 1
Query: 1813 SVKIDEMMGDMRLSLNTDPSSKFVVFSQYPQVVDRASAILQSRGYLTVCVVGTRGRVERSNAVASFTNDPSVKVILLTTGSAAAG 2067
S K+ ++G + +L++DPS+KFVVFSQ+P L G+ V V +R AV +F++DP VKVIL+ G AAG
Sbjct: 592 SAKMQALVGILESTLSSDPSAKFVVFSQFPFTT--VKPCLDQHGFACVSVTAQCKMADRQQAVGAFSSDPDVKVILVGMGVGAAG 674 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4836.11945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4836.11945.1 >prot_H-paniculata_contig4836.11945.1 ID=prot_H-paniculata_contig4836.11945.1|Name=mRNA_H-paniculata_contig4836.11945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=689bp LDNLQRSIQPRLPSPVQGMFFNASYSASQVQAHAQAQGRAQAAEIETLPAback to top mRNA from alignment at H-paniculata_contig4836:3375..14733+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4836.11945.1 ID=mRNA_H-paniculata_contig4836.11945.1|Name=mRNA_H-paniculata_contig4836.11945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11359bp|location=Sequence derived from alignment at H-paniculata_contig4836:3375..14733+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4836:3375..14733+ >mRNA_H-paniculata_contig4836.11945.1 ID=mRNA_H-paniculata_contig4836.11945.1|Name=mRNA_H-paniculata_contig4836.11945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4134bp|location=Sequence derived from alignment at H-paniculata_contig4836:3375..14733+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |