prot_H-paniculata_contig4835.11944.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4835.11944.1
Unique Nameprot_H-paniculata_contig4835.11944.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length508
Homology
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BLAST of mRNA_H-paniculata_contig4835.11944.1 vs. uniprot
Match: D7FZM3_ECTSI (HABP4_PAI-RBP1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZM3_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 1.460e-55
Identity = 194/406 (47.78%), Postives = 233/406 (57.39%), Query Frame = 0 
Query:    1 MATFNPFGALDSDDETDAPVVSTTTSXXXXXTS--------GKSGKAFPSAGGEKSGDSGRSDRPRRDAGGRXXXXXXXXFSGRYEGRXXXXXXXXXXXXXXXXXRNGPERETFDDRRRERGGYGDNRHGGDR-------GGRMGYAGRDGRNREYDRRSGTGRPWDN-STLGLPVLQYKILVCVCAPELVRLIGDLKSSRVPPDFVPSSDFVRPSRICSVRGREVKKSGGGGRNWGNDAAADVDSAAATADSAET--EGTGWGAGASNGTAGGEPATFVPGEEAVEGDDAEASAAPVDDTPPEPIXXXXXXEASHARGIQLTLDEHEAVLAEKARELADMIGKVSIKTVDTSEFDEGAIRLKAEVQEEGYMSGKVAKKGRAKHQQRAKEVFQDVGFRAPALNSGG 388
            MATFNPFGALDSDDE    V S TT XXXXX          GK     P+   +  G         RDAGGR     XXX        XXXXXXXXXXXXXX     GPERE+FDDRRRERGGYG    GG+                    NREYDRRSGTG    + S +  P   Y      C   +  L+G  +S+   P ++     ++ + +    GRE+KKSGGGGRNWGNDAAA +D+AAA A++     +G GWGA   NG+A   P    P  E  +G   +   +P +DTP   +      E      IQLTLDEH+A+L  KA+ELADMIG+VSIKTVD SEF++GAIR K +V+EEG+M GK  K  + K QQRAKEVFQDVGFRAPA+NSGG
Sbjct:    1 MATFNPFGALDSDDE---GVNSVTTXXXXXXXXXXXXXXXXGKKPTPAPAPAAKSGG---------RDAGGRGPRREXXXXXXXXXXXXXXXXXXXXXXXXXGDR--GPERESFDDRRRERGGYG----GGENRXXXXXXXXXXXXXXXXXXNREYDRRSGTGSHLSSGSVVHFPKFSY------CFWCVTTLVGSGRSNTSRPRWMVFE--LKAATMLLEWGREIKKSGGGGRNWGNDAAAGMDNAAANAENEAEGDQGAGWGA---NGSAA--PNAEDPMTETGDGQATDGGESPKEDTPAPRVPEPEPEE------IQLTLDEHQAMLDAKAKELADMIGEVSIKTVDDSEFNDGAIRNKQDVEEEGFMGGKATKTRKVKTQQRAKEVFQDVGFRAPAMNSGG 369
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4835.11944.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZM3_ECTSI1.460e-5547.78HABP4_PAI-RBP1 domain-containing protein n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 306..326
NoneNo IPR availablePANTHERPTHR12299:SF17AT19571P-RELATEDcoord: 1..433
IPR006861Hyaluronan/mRNA-binding proteinSMARTSM01233HABP4_PAI_RBP1_2coord: 137..333
e-value: 1.7E-4
score: 31.0
IPR006861Hyaluronan/mRNA-binding proteinPFAMPF04774HABP4_PAI-RBP1coord: 205..321
e-value: 8.1E-5
score: 23.4
IPR039764RNA binding protein HABP4/SERBP1PANTHERPTHR12299HYALURONIC ACID-BINDING PROTEIN 4coord: 1..433

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4835contigH-paniculata_contig4835:1214..11254 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4835.11944.1mRNA_H-paniculata_contig4835.11944.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4835 1214..11475 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4835.11944.1 ID=prot_H-paniculata_contig4835.11944.1|Name=mRNA_H-paniculata_contig4835.11944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=508bp
MATFNPFGALDSDDETDAPVVSTTTSTSSKKTSGKSGKAFPSAGGEKSGD
SGRSDRPRRDAGGRAGGGGRGGFSGRYEGRGGGRGGGRGRFDGGGGERNG
PERETFDDRRRERGGYGDNRHGGDRGGRMGYAGRDGRNREYDRRSGTGRP
WDNSTLGLPVLQYKILVCVCAPELVRLIGDLKSSRVPPDFVPSSDFVRPS
RICSVRGREVKKSGGGGRNWGNDAAADVDSAAATADSAETEGTGWGAGAS
NGTAGGEPATFVPGEEAVEGDDAEASAAPVDDTPPEPIPEPEPEEASHAR
GIQLTLDEHEAVLAEKARELADMIGKVSIKTVDTSEFDEGAIRLKAEVQE
EGYMSGKVAKKGRAKHQQRAKEVFQDVGFRAPALNSGGRGRGRGRGRDGG
GRGGRSYDRPRPSYGEGGEGGDWGGGGGGGQGGDGGGANEGGGPPRPRYQ
GGGGGGGYGGGGGGGGGGGGGGGGGGGGGYQGGGGFRGNGGASAPLNLKD
DEAFPSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006861HABP4_PAIRBP1-bd
IPR039764HABP4/SERBP1