mRNA_H-paniculata_contig4831.11941.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4831.11941.1
Unique NamemRNA_H-paniculata_contig4831.11941.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4831.11941.1 vs. uniprot
Match: A0A834WSR7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WSR7_9FABA)

HSP 1 Score: 55.5 bits (132), Expect = 1.290e-6
Identity = 35/112 (31.25%), Postives = 59/112 (52.68%), Query Frame = 1 
Query:   19 RCHRCDQIGHVHTQC---------TARVTPSTDPNPPQCGLPVALTNQTPTINNDNTWVADSGASNHMTSNLAKMYDLRKPVAGEDVVMLGDGSILVVDLVGMLDLIFHSTT 327
            +C  C ++GH+   C          A +T   + N P  G PV     TP    D++W ADSGASNH+T++ + +  +++P  GE+ V + +GS L +  +G   L+ + +T
Sbjct:  427 QCQVCGRMGHIAINCYNRFNQSYTEASLTQFLNQNKPNNGAPVEALLATPETLCDDSWFADSGASNHLTNSSSNLQ-VKQPYDGEEQVHIANGSGLKISGIGFSKLLTNGST 537
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BLAST of mRNA_H-paniculata_contig4831.11941.1 vs. uniprot
Match: A0A803PZP0_CANSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803PZP0_CANSA)

HSP 1 Score: 53.9 bits (128), Expect = 4.450e-6
Identity = 37/100 (37.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:   22 CHRCDQIGHVHTQCTARVTPS---TDPNPPQCGLPVALTNQT-----PTINNDNTWVADSGASNHMTSNLAKMYDLRKPVAGEDVVMLGDGSILVVDLVG 297
            C  C + GH  T C  R   S    DPN    G     TN       P +   + W ADSGASNH+TS++A +   ++P  G++ V++GDGS L +  VG
Sbjct:  144 CQVCGKYGHSTTVCYNRFDESYMGADPNNTNGGNKTPQTNHNAFIANPEVLESDAWFADSGASNHITSDVAALSQ-KQPYGGKEKVIVGDGSKLSISHVG 242
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BLAST of mRNA_H-paniculata_contig4831.11941.1 vs. uniprot
Match: A0A438IVY4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IVY4_VITVI)

HSP 1 Score: 52.0 bits (123), Expect = 2.030e-5
Identity = 39/101 (38.61%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:   19 RCHRCDQIGHVHTQCTA------RVTPSTDP-NPPQCGLPV---ALTNQTPTINNDNTWVADSGASNHMTSNLAKMYDLRKPVAGEDVVMLGDGSILVVDL 291
            RC  C   GHV ++C        +V P + P N  Q   P    A  N T TI  + TW+ DSGAS+H+T++L  +  L  P  G D +M+GDGS L + L
Sbjct:  338 RCQWCSTQGHVVSRCPLFRQQFPQVQPPSRPGNSSQSRPPAPWQAQANVTTTIPPNTTWLLDSGASHHVTTDLHNLA-LHSPFDGTDEIMIGDGSGLPISL 437
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BLAST of mRNA_H-paniculata_contig4831.11941.1 vs. uniprot
Match: UPI00064E0A04 (uncharacterized protein LOC105964602 n=1 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064E0A04)

HSP 1 Score: 51.6 bits (122), Expect = 2.660e-5
Identity = 31/85 (36.47%), Postives = 44/85 (51.76%), Query Frame = 1 
Query:   22 CHRCDQIGHVHTQCTARVTPSTDPNPPQCGLPVALTNQTPTINNDNTWVADSGASNHMTSNLAKMYDLRKPVAGEDVVMLGDGSI 276
            C  CD+ GHV   C +R        PP      A      T NN ++W+ DSGAS+H+TS+L  +  +     G D +M+G+GSI
Sbjct:  296 CQLCDKPGHVAKVCRSR--------PPPTNWAQANFTTHETSNNPSSWIVDSGASHHITSDLQNL-SIHSEYGGNDDIMVGNGSI 371
[Close]
BLAST of mRNA_H-paniculata_contig4831.11941.1 vs. uniprot
Match: A0A438BWV7_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BWV7_VITVI)

HSP 1 Score: 51.6 bits (122), Expect = 2.740e-5
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1 
Query:   19 RCHRCDQIGHVHTQCTA------RVTPSTDP-NPPQCGLPV---ALTNQTPTINNDNTWVADSGASNHMTSNLAKMYDLRKPVAGEDVVMLGDGSILVVDLVGMLDL 309
            RC  C   GHV ++C        +V P + P N  Q   P    A  N T TI  + TW+ DSGAS+H+T++L  +  L  P  G D +M+GDGS L +   G   L
Sbjct:  237 RCQWCSTQGHVVSRCPLFRQQFPQVQPPSRPGNSSQSRPPAPWQAQANVTTTIPPNTTWLLDSGASHHVTTDLHNLA-LHSPFDGTDEIMIGDGSGLPISHTGSTSL 342
[Close]
BLAST of mRNA_H-paniculata_contig4831.11941.1 vs. uniprot
Match: UPI0008FECDAB (uncharacterized protein LOC109124025 n=1 Tax=Vitis vinifera TaxID=29760 RepID=UPI0008FECDAB)

HSP 1 Score: 51.2 bits (121), Expect = 2.760e-5
Identity = 39/103 (37.86%), Postives = 53/103 (51.46%), Query Frame = 1 
Query:   19 RCHRCDQIGHVHTQCTA------RVTPSTDP-NPPQCGLPV---ALTNQTPTINNDNTWVADSGASNHMTSNLAKMYDLRKPVAGEDVVMLGDGSILVVDLVG 297
            RC  C   GHV ++C        +V P + P N  Q   P    A  N T TI  + TW+ DSGAS+H+T++L  +  L  P  G D +M+GDGS L +   G
Sbjct:  129 RCQWCSTQGHVVSRCPLFRQQFPQVQPPSRPGNSSQSRPPAPWQAQANVTTTIPPNTTWLLDSGASHHVTTDLHNLA-LHSPFDGTDEIMIGDGSGLPISHTG 230
[Close]
BLAST of mRNA_H-paniculata_contig4831.11941.1 vs. uniprot
Match: A0A438C3R7_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438C3R7_VITVI)

HSP 1 Score: 51.6 bits (122), Expect = 2.890e-5
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1 
Query:   19 RCHRCDQIGHVHTQCTA------RVTPSTDP-NPPQCGLPV---ALTNQTPTINNDNTWVADSGASNHMTSNLAKMYDLRKPVAGEDVVMLGDGSILVVDLVGMLDL 309
            RC  C   GHV ++C        +V P + P N  Q   P    A  N T TI  + TW+ DSGAS+H+T++L  +  L  P  G D +M+GDGS L +   G   L
Sbjct:  279 RCQWCSTQGHVVSRCPLFRQQFPQVQPPSRPGNSSQSRPPAPWQAQANVTTTIPPNTTWLLDSGASHHVTTDLHNLA-LHSPFDGTDEIMIGDGSGLPISHTGSTSL 384
[Close]
BLAST of mRNA_H-paniculata_contig4831.11941.1 vs. uniprot
Match: A0A438DLT9_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DLT9_VITVI)

HSP 1 Score: 51.6 bits (122), Expect = 2.970e-5
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1 
Query:   19 RCHRCDQIGHVHTQCT------ARVTPSTDP-NPPQCGLPV---ALTNQTPTINNDNTWVADSGASNHMTSNLAKMYDLRKPVAGEDVVMLGDGSILVVDLVGMLDL 309
            RC  C   GHV ++C        +V P + P N  Q   P    A  N T TI  + TW+ DSGAS+H+T++L  +  L  P  G D +M+GDGS L +   G   L
Sbjct:  272 RCQWCSTQGHVVSRCPFFRQQFPQVQPPSRPGNSSQSRPPAPWQAQANVTTTIPPNTTWLLDSGASHHVTTDLHNLT-LHSPFDGTDEIMIGDGSGLPISHTGSTSL 377
[Close]
BLAST of mRNA_H-paniculata_contig4831.11941.1 vs. uniprot
Match: UPI00053F393E (uncharacterized protein LOC104878368 n=1 Tax=Vitis vinifera TaxID=29760 RepID=UPI00053F393E)

HSP 1 Score: 51.2 bits (121), Expect = 3.560e-5
Identity = 39/103 (37.86%), Postives = 53/103 (51.46%), Query Frame = 1 
Query:   19 RCHRCDQIGHVHTQCTA------RVTPSTDP-NPPQCGLPV---ALTNQTPTINNDNTWVADSGASNHMTSNLAKMYDLRKPVAGEDVVMLGDGSILVVDLVG 297
            RC  C   GHV ++C        +V P + P N  Q   P    A  N T TI  + TW+ DSGAS+H+T++L  +  L  P  G D +M+GDGS L +   G
Sbjct:  237 RCQWCSTQGHVVSRCPLFRQQFPQVQPPSRPGNSSQSRPPAPWQAQANVTTTIPPNTTWLLDSGASHHVTTDLHNLA-LHSPFDGTDEIMIGDGSGLPISHTG 338
[Close]
BLAST of mRNA_H-paniculata_contig4831.11941.1 vs. uniprot
Match: UPI001FB1617D (uncharacterized protein LOC124931713 n=7 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB1617D)

HSP 1 Score: 51.2 bits (121), Expect = 3.680e-5
Identity = 37/108 (34.26%), Postives = 54/108 (50.00%), Query Frame = 1 
Query:   19 RCHRCDQIGHVHTQCTAR---VTPSTDPNPPQCGLPVALTNQTPTIN----------------NDNT----WVADSGASNHMTSNLAKMYDLRKPVAGEDVVMLGDGS 273
            RC  C+++GH  TQC A+   V+  T  +  +  L +A++ + P IN                ND T    W  D+GASNHMT +  K ++L + V G+  V  GDGS
Sbjct:  282 RCFNCNEMGHYSTQCRAKKNEVSHLTHADNVEPALLMAISEEIPPINVVMLNEMKTPEILEAKNDETSRDAWFLDNGASNHMTGDKEKFFELDEAVTGK--VKFGDGS 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4831.11941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A834WSR7_9FABA1.290e-631.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A803PZP0_CANSA4.450e-637.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438IVY4_VITVI2.030e-538.61Retrovirus-related Pol polyprotein from transposon... [more]
UPI00064E0A042.660e-536.47uncharacterized protein LOC105964602 n=1 Tax=Eryth... [more]
A0A438BWV7_VITVI2.740e-537.38Retrovirus-related Pol polyprotein from transposon... [more]
UPI0008FECDAB2.760e-537.86uncharacterized protein LOC109124025 n=1 Tax=Vitis... [more]
A0A438C3R7_VITVI2.890e-537.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A438DLT9_VITVI2.970e-537.38Retrovirus-related Pol polyprotein from transposon... [more]
UPI00053F393E3.560e-537.86uncharacterized protein LOC104878368 n=1 Tax=Vitis... [more]
UPI001FB1617D3.680e-534.26uncharacterized protein LOC124931713 n=7 Tax=Impat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4831contigH-paniculata_contig4831:14326..15110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930431.7342157-CDS-H-paniculata_contig4831:14325..144281622930431.7342157-CDS-H-paniculata_contig4831:14325..14428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4831 14326..14428 +
1691481289.5366206-CDS-H-paniculata_contig4831:14325..144281691481289.5366206-CDS-H-paniculata_contig4831:14325..14428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4831 14326..14428 +
1622930431.8371124-CDS-H-paniculata_contig4831:14886..151101622930431.8371124-CDS-H-paniculata_contig4831:14886..15110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4831 14887..15110 +
1691481289.545711-CDS-H-paniculata_contig4831:14886..151101691481289.545711-CDS-H-paniculata_contig4831:14886..15110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4831 14887..15110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4831.11941.1prot_H-paniculata_contig4831.11941.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4831 14326..15110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4831.11941.1

>prot_H-paniculata_contig4831.11941.1 ID=prot_H-paniculata_contig4831.11941.1|Name=mRNA_H-paniculata_contig4831.11941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
PDDPCERCHRCDQIGHVHTQCTARVTPSTDPNPPQCGLPVALTNQTPTIN
NDNTWVADSGASNHMTSNLAKMYDLRKPVAGEDVVMLGDGSILVVDLVGM
LDLIFHSTT
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mRNA from alignment at H-paniculata_contig4831:14326..15110+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4831.11941.1 ID=mRNA_H-paniculata_contig4831.11941.1|Name=mRNA_H-paniculata_contig4831.11941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=785bp|location=Sequence derived from alignment at H-paniculata_contig4831:14326..15110+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGACGATCCATGTGAGCGGTGCCACCGATGTGACCAGATCGGCCACGT
CCACACCCAGTGCACTGCTCGTGTCACCCCCAGCACGGATCCAAATCCAC
CTCGTTCGTTGCTGGTCGCCACTTCAACACCAGTGCAAGACCGTTCAGGG
GTATATCATCACCAGCACTACCCTCTTCAGCAATCCCAGGACCTACGCCA
GCCGCCTCAGTCTCAGCAACAGAAACAACAGCAACAGCAGCAGCCCTTGC
CCCCTGAAGCTGACTCCGATCCGACTCCATTTCCGGCGAGGTACTCACCC
CTTCTTACAGCACAATTTGTGCTTCCAGGCAAGTGTCGTGTTTAGGGAAG
GTCTGTACTGTCTGATTTTGATGTTCATGAGAGTGTCAATTTTTCTGGTG
TTGGGATGGGTAACGATGTGCAAGACTGGTAATGTTGATGGAGTAGAGAT
CGATGAGATTGAGAGTAAGACTGGTATCCCGAATCTTTCTGTACGAAAAA
CGTTTTTCGAGCACTTTCGATTTGATTGATGTTGGGAAGTTGGATGATAC
AGAGGGTGGAGAGTGCGGTTTGCCTGTAGCCTTGACGAATCAAACTCCAA
CTATTAACAATGACAATACGTGGGTAGCTGATTCTGGTGCAAGTAACCAC
ATGACGAGCAATCTTGCGAAAATGTATGACCTTCGCAAGCCGGTGGCAGG
GGAAGATGTGGTAATGTTGGGGGATGGGTCGATTCTGGTGGTAGATTTGG
TGGGAATGTTGGATTTGATTTTTCACTCCACTACT
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Coding sequence (CDS) from alignment at H-paniculata_contig4831:14326..15110+

>mRNA_H-paniculata_contig4831.11941.1 ID=mRNA_H-paniculata_contig4831.11941.1|Name=mRNA_H-paniculata_contig4831.11941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig4831:14326..15110+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGACGATCCATGTGAGCGGTGCCACCGATGTGACCAGATCGGCCACGT
CCACACCCAGTGCACTGCTCGTGTCACCCCCAGCACGGATCCAAATCCAC
CTCCCGGACGATCCATGTGAGCGGTGCCACCGATGTGACCAGATCGGCCA
CGTCCACACCCAGTGCACTGCTCGTGTCACCCCCAGCACGGATCCAAATC
CACCTCAGTGCGGTTTGCCTGTAGCCTTGACGAATCAAACTCCAACTATT
AACAATGACAATACGTGGGTAGCTGATTCTGGTGCAAGTAACCACATGAC
GAGCAATCTTGCGAAAATGTATGACCTTCGCAAGCCGGTGGCAGGGGAAG
ATGTGGTAATGTTGGGGGATGGGTCGATTCTGGTGGTAGATTTGGTGGGA
ATGTTGGATTTGATTTTTCACTCCACTACTAGTGCGGTTTGCCTGTAGCC
TTGACGAATCAAACTCCAACTATTAACAATGACAATACGTGGGTAGCTGA
TTCTGGTGCAAGTAACCACATGACGAGCAATCTTGCGAAAATGTATGACC
TTCGCAAGCCGGTGGCAGGGGAAGATGTGGTAATGTTGGGGGATGGGTCG
ATTCTGGTGGTAGATTTGGTGGGAATGTTGGATTTGATTTTTCACTCCAC
TACT
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