prot_H-paniculata_contig4831.11940.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4831.11940.1
Unique Nameprot_H-paniculata_contig4831.11940.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1528
Homology
BLAST of mRNA_H-paniculata_contig4831.11940.1 vs. uniprot
Match: D7FZZ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ9_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 1.480e-113
Identity = 240/498 (48.19%), Postives = 306/498 (61.45%), Query Frame = 0
Query:    5 IDYWEEISAEDGSIWFYNHTTQEYSEALPT--ALTTIEPGDENARTT---ENNTGLTMEPIS-EIWEDEAEGEVFVPWAVDDPGDMKATLPTATVVAELPGLPESAVADELACKPDDPAAIREQNMRALLVLLPARVVDIVVKEAMKLALLHIKRQATAQAERRRRSLLATRAEYRHIRTSVAKVSVAGQIGYKGNSGACSDDESGD--EGTGIDERE-----RNTITQERDFIAGEKLAETLKVLLSGSKEEARLTMRRVCLSSQGIGPTGARELVPALKKCIIVALFLGNNAIGDKGAEALADGLRYARGLQELHLNDNEASCGDEGITDAGCDRLVVSLEPLPVLTSLNLSHNPFGEDGCRSLATLISQPGCPLKSLAIAGCLDVDPGAWKTIAPPPCKGKKNIGQTRWVPPRPGDDGAVFLSAALMSPHGCPLRSFRFVNAGIRALGAKAIAAALCANKILEVIDLSGNDLAHKNDDEPGESAGESLKFGLQVN 489
            +DYWEE++ EDG++ FYNHT QEY   LP   A        + A+ T   E +   ++EP+  ++W D  +GEVFVPW  ++   M+A+ P A VVA    L  +   DE    PDDPA +REQN+RALLVLLPA++++ V+K AM+ A+LH +R ATA AE+RRR LL++RA++RH     AK +  G + +K   G   + E G   EG  +D  E     RNT TQERD I G KL E L+VL S S EEAR+TMR + LSSQGIG  GA++L PALK C+IVAL LGNNA+GDKG  +LADGLR+ARGLQ+L                                                SLA  +SQ GCPL+SL++AGCLDVDP AWKTI     +GK+ +   RW PPRPGDDGAV L+AAL+SPHGCPLR  R  NAG++ +GAKAIA ALCAN+ LE +D+SGND     D    ESA + L FGLQ +
Sbjct:   27 VDYWEEVALEDGTVCFYNHTRQEYFSLLPANDATNGCPASVDEAQPTAVGEFSHDNSLEPLEGQVW-DGVDGEVFVPWPDEE---MRAS-PDA-VVAHNKALETTEGDDEEPFTPDDPAVVREQNLRALLVLLPAKLMNGVIKAAMEGAMLHTRRTATADAEKRRRLLLSSRAQFRHT----AKKNCQGDMKHKDGDGFDDETEEGPTAEGETVDSAETPDSRRNTTTQERDTIVGHKLQEVLRVLYSTSTEEARVTMRAIYLSSQGIGAAGAQQLAPALKDCVIVALHLGNNALGDKGLCSLADGLRHARGLQKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXXLSLAIYLSQQGCPLRSLSLAGCLDVDPAAWKTIN---VRGKEGM---RWDPPRPGDDGAVSLAAALISPHGCPLRRLRMANAGMKTIGAKAIATALCANRTLETVDVSGNDFGSTTDASAWESAADLLSFGLQAS 501          
BLAST of mRNA_H-paniculata_contig4831.11940.1 vs. uniprot
Match: A0A6H5KJE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE5_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.920e-23
Identity = 65/123 (52.85%), Postives = 89/123 (72.36%), Query Frame = 0
Query: 1407 GVGEEEEEG-AFLPELDERGLTASQRVKQLQDARGAAEKEKKRAYTEYSRRVKRNLRAQRRFNKAGKRADILAHSMDAAELADCLRGRGWDKEVDKTPIDDLRRTAVEVIRPEIRIRLHATSR 1528
            G GEE+EEG   LPE+D+R LT  QR+++L+DAR   E+EK+RA+ EYSR+VK NLR ++RF  A KRA  +A SMD  +L + L+ RG+  +  +  +D LRR  +E I+PEIR+RLHATSR
Sbjct:    4 GSGEEDEEGNPILPEIDDRFLTVGQRLRRLRDARDNLEREKQRAHLEYSRQVKSNLRERKRFVLAEKRAGRIAKSMDTKQLVEALKERGYATKGSEQ-LDQLRRVFIEGIQPEIRVRLHATSR 125          
BLAST of mRNA_H-paniculata_contig4831.11940.1 vs. uniprot
Match: A0A836CKC6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC6_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.170e-19
Identity = 92/308 (29.87%), Postives = 125/308 (40.58%), Query Frame = 0
Query:  290 GAEALADGLRYARGLQELHLNDNEASCGDEGITDAGCDRLVVSLE-PLPVLTSLNLSHNPFGEDGCRSLATLISQPGCPLKSLAIAGCLDVDPGAWKTIAPPPCKGKKNIGQTRWVPPRPGDDGAVFLSAALMSPHGCPLRSFRFVNAGIRALGAKAIAAALCANKILEVIDLSGNDLAHKNDDEPGESAGESLKFGLQVNTT-----------------------VRTITLRACGLAHSEVVGIQRYASRTSGKQNRPRSAIESRNGPDSDSGQLSWAQEKSLGYKAHLLRNWLLDAACVKGMEYPR 573
            GA ALA  LR+AR L+ LHL  N        + DAG   L  +   P P L  +                           +L++ G +    G ++                      PGD+GAV L+AAL+SPHGC L+  R VNA + A G +AIAAAL     LE +DLSGNDL+   D +       +++                               +R++ LRACGL+ +++    R           P                L+WA+EK LG +   LR WLLDAA  KG EYPR
Sbjct:  266 GAAALAAALRHARALRALHLASNS-------VGDAGARALAAAAAAPHPTLAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXALSLGGAVTSLVGVYQAGGSTAAXXXXXXXXXXXXX-XPGDEGAVCLAAALLSPHGCALQRLRLVNARLGAAGVRAIAAALHCRSALEELDLSGNDLS---DVDTAALLLRAIRVAAXXXXXXXXXXXXXXXXXXXXXXXXXEGRLRSVALRACGLSGAQLAEAARLTGAAXXXXXXP----------------LTWAEEKRLGAEGAALRAWLLDAAAGKGFEYPR 546          
BLAST of mRNA_H-paniculata_contig4831.11940.1 vs. uniprot
Match: A0A4X2K3W7_VOMUR (NLR family pyrin domain containing 12 n=3 Tax=Diprotodontia TaxID=38609 RepID=A0A4X2K3W7_VOMUR)

HSP 1 Score: 61.2 bits (147), Expect = 1.860e-5
Identity = 63/229 (27.51%), Postives = 100/229 (43.67%), Query Frame = 0
Query:  276 IVALFLGNNAIGDKGAEALADGLRYAR-GLQELHLNDNEASCGDEGITDAGCDRLVVSLEPLPVLTSLNLSHNPFGEDGCRSLATLISQPGCPLKSLAIAGCLDVDPGAWKTIAPPPCKGKKNIGQTRWVPPRPGDDGAVFLSAALMSPHGCPLRSFRFVNAGIRALGAKAIAAALCANKILEVIDLSGNDLAHKNDDEPGESAGESLKFGL-QVNTTVRTITLRACGL 502
            +V L L  NA+G++GA+ L  GLR+    LQ L L           I+ A C  + ++L     LT L+LS N  G  G   L   + QP C L+ L +  C  +D  A + ++       +++ +        GD G   L   L  P  C L++       +     + +++ L  N+ L  +DLS NDL        G+   +SL  GL    + ++T+ L  C L
Sbjct:  725 LVELVLYRNALGNRGAKLLCQGLRHPNCHLQNLRLKQCR-------ISSAACQDIALALRTNRNLTRLDLSRNTLGATGVMLLCEALQQPTCHLQMLQLRRC-QLDGAACQELSKV-LSTSQHLTELDLTGNALGDLGLQHLCPGLSHP-ACKLQTLWLKICHLTPSACQNLSSVLSTNQNLTELDLSLNDL--------GDLGVKSLCEGLCHSKSQLQTLRLGICRL 935          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4831.11940.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FZZ9_ECTSI1.480e-11348.19Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KJE5_9PHAE5.920e-2352.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CKC6_9STRA2.170e-1929.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4X2K3W7_VOMUR1.860e-527.51NLR family pyrin domain containing 12 n=3 Tax=Dipr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1034..1054
NoneNo IPR availableCOILSCoilCoilcoord: 1432..1452
NoneNo IPR availableCOILSCoilCoilcoord: 864..884
NoneNo IPR availableCOILSCoilCoilcoord: 985..1005
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 336..363
e-value: 0.0011
score: 28.3
coord: 273..300
e-value: 0.052
score: 22.7
coord: 301..335
e-value: 34.0
score: 6.3
NoneNo IPR availablePANTHERPTHR24107FAMILY NOT NAMEDcoord: 244..533
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 250..504
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 281..295
e-value: 0.67
score: 10.2
coord: 339..358
e-value: 0.086
score: 12.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 221..380
e-value: 2.1E-23
score: 84.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 396..531
e-value: 6.2E-9
score: 37.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4831contigH-paniculata_contig4831:2269..12376 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4831.11940.1mRNA_H-paniculata_contig4831.11940.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4831 2269..12376 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4831.11940.1 ID=prot_H-paniculata_contig4831.11940.1|Name=mRNA_H-paniculata_contig4831.11940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1528bp
AESAIDYWEEISAEDGSIWFYNHTTQEYSEALPTALTTIEPGDENARTTE
NNTGLTMEPISEIWEDEAEGEVFVPWAVDDPGDMKATLPTATVVAELPGL
PESAVADELACKPDDPAAIREQNMRALLVLLPARVVDIVVKEAMKLALLH
IKRQATAQAERRRRSLLATRAEYRHIRTSVAKVSVAGQIGYKGNSGACSD
DESGDEGTGIDERERNTITQERDFIAGEKLAETLKVLLSGSKEEARLTMR
RVCLSSQGIGPTGARELVPALKKCIIVALFLGNNAIGDKGAEALADGLRY
ARGLQELHLNDNEASCGDEGITDAGCDRLVVSLEPLPVLTSLNLSHNPFG
EDGCRSLATLISQPGCPLKSLAIAGCLDVDPGAWKTIAPPPCKGKKNIGQ
TRWVPPRPGDDGAVFLSAALMSPHGCPLRSFRFVNAGIRALGAKAIAAAL
CANKILEVIDLSGNDLAHKNDDEPGESAGESLKFGLQVNTTVRTITLRAC
GLAHSEVVGIQRYASRTSGKQNRPRSAIESRNGPDSDSGQLSWAQEKSLG
YKAHLLRNWLLDAACVKGMEYPRELPADSGDVIPVTAAINFEPGIQLSEQ
TTTAMASQRGNESLSVVRGCVGRIEDKNSWSSLEPRLSRSILVLRNVLES
GTNALASNRNGEKANIDRVENALLTADFAMLRTLLRSEGGSETQLTKSRM
MQTVETLDAHLGEKGVPKVENVADPAEIGNSVNTASRILAAATHQNISAS
RLEVCLVAGAKSSNSTSGSQANASVDICEETVTNSIKLTSDHLQEVKSNS
SPAESSTGKNEKKKLLIASAEDILGHVDAKEIISDALGEADLNSGRIVTA
ATLANAAEEGRNVVKLSSQRRTELQNMANDLRRQLACLPDSKARFHHQIG
EEVDVLRSAVGEAESLKVLALDAVRHLRPTEECARRTVIARTVEFKQVEE
GRQSNAGEYNLTEKKHRRDDWQDTVAHAEGLTHALEDALKRLRHIERCID
DLNSKQRALNKKLSVYCKNYKDRLSTLGTSIADIRSKRDALQRAEITLTD
LAANVECLSRVVREEEILRGLVAAGSCRRSLDLHVADAVRVASAASADIN
LALQRREEMAAMLALSRPPSQASTLVKEGLAGEVVSPAAATMTQSATSPA
GAAPGQTEETSLNNGARAILYSSYRSTGVSVKGTEDDGNEECDFSLLRDD
AQIVILDRRKNGVSTSPSSTAKRLMPSTSQQSFGWGLPKLGEPRQGNDSN
QPKVGFIKGVSAERELFAPDSPNRFKGESKEGSKLCACFEFIPPDVGACC
LLPQNMHGAFLKADQAYRDTVVRANTTRVRQALALIRDHIVILRLREKEA
EGRSDSQRCDRLSRFTAGLGARRQVTRGRRAKRGCTLVGAELNDRIALGA
RVALGLGVGEEEEEGAFLPELDERGLTASQRVKQLQDARGAAEKEKKRAY
TEYSRRVKRNLRAQRRFNKAGKRADILAHSMDAAELADCLRGRGWDKEVD
KTPIDDLRRTAVEVIRPEIRIRLHATSR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf