mRNA_H-paniculata_contig48307.11939.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig48307.11939.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 9.220e-9 Identity = 25/49 (51.02%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 1 LHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTK 147
L L +N +SNRS+HI++R+ ALR W+ S+++ +DHV S+ L+DILTK
Sbjct: 815 LSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSDILTK 863
BLAST of mRNA_H-paniculata_contig48307.11939.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 1.720e-8 Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 1 LHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 201
L LAAN+ +S+R+KHIA+RF L++ I+ + + HV + LADI TKH +R F + ++ FG
Sbjct: 792 LSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSIIHQIKDFG 858
BLAST of mRNA_H-paniculata_contig48307.11939.1 vs. uniprot
Match: A0A085MHH4_9BILA (Uncharacterized protein n=2 Tax=Trichuris suis TaxID=68888 RepID=A0A085MHH4_9BILA) HSP 1 Score: 54.3 bits (129), Expect = 4.000e-8 Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 7 LAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLR 180
L N + R+KHIA+++ +R+ + L I+HVAS DQLADI+TK RV F +LR
Sbjct: 12 LVRNPEFHKRTKHIAVKYHFVREKFLNGDLDIEHVASMDQLADIMTKPLGRVRFRELR 69
BLAST of mRNA_H-paniculata_contig48307.11939.1 vs. uniprot
Match: A0A6H5JRF1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF1_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 1.110e-7 Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 10 AANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 201
A NS + RSK I+ R+ LR + +V+ V S +QLADILTKH ERV F +LR+ V G
Sbjct: 457 AGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 520
BLAST of mRNA_H-paniculata_contig48307.11939.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 1.120e-7 Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 10 AANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 201
A NS + RSK I+ R+ LR + +V+ V S +QLADILTKH ERV F +LR+ V G
Sbjct: 640 AGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 703
BLAST of mRNA_H-paniculata_contig48307.11939.1 vs. uniprot
Match: A0A1Y1K7G3_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1K7G3_PHOPY) HSP 1 Score: 55.8 bits (133), Expect = 1.390e-7 Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 7 LAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 201
LA N ++ RSKHI +R +R+ +++ ++ I HVAS DQ+ADILTK ++ F LR K+ F
Sbjct: 176 LARNPSFHKRSKHIDVRAHFVRERVQNKEMNIVHVASEDQVADILTKPIPKIQFQHLREKLGMFS 240
BLAST of mRNA_H-paniculata_contig48307.11939.1 vs. uniprot
Match: A0A438DUA3_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DUA3_VITVI) HSP 1 Score: 56.2 bits (134), Expect = 1.540e-7 Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 4 HLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 189
HLAANS + +RSKHI + +R+ + +L I +V S DQLADI TKH F LRSK+
Sbjct: 888 HLAANSVFHSRSKHIELDLHFIREKVLRQELQICYVPSGDQLADIFTKHLPITQFCNLRSKL 949
BLAST of mRNA_H-paniculata_contig48307.11939.1 vs. uniprot
Match: A0A5N6NNG9_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NNG9_9ASTR) HSP 1 Score: 55.1 bits (131), Expect = 2.010e-7 Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 4 HLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 189
+L AN Y +R KH+A+ + +R+ + +L + H+ SADQLAD+LTK R F +LR+K+
Sbjct: 125 YLCANPVYHSRMKHVALDYHFVREKVVGGELQVQHIHSADQLADVLTKPLGRGPFQRLRAKI 186
BLAST of mRNA_H-paniculata_contig48307.11939.1 vs. uniprot
Match: A0A834HNH3_RHOSS (CCHC-type domain-containing protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834HNH3_RHOSS) HSP 1 Score: 55.5 bits (132), Expect = 2.850e-7 Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 4 HLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 189
++ AN + +R KHIAI F +RD + L + HVA+ADQLAD LTK R + LRSK+
Sbjct: 537 YVCANPVFHSRMKHIAIDFHFVRDLVSKGILTVSHVATADQLADALTKPLSRQRLSLLRSKI 598
BLAST of mRNA_H-paniculata_contig48307.11939.1 vs. uniprot
Match: A0A8J6LGP6_TENMO (Integrase catalytic domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LGP6_TENMO) HSP 1 Score: 55.5 bits (132), Expect = 2.890e-7 Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 7 LAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 189
LA N + RSKHI +R +R+ + +L+I+H+AS DQ+AD+LTK F +LR K+
Sbjct: 635 LAKNPIFHKRSKHIDVRAHFVRELVEEGKLIIEHIASKDQVADLLTKPIPSTQFRRLRDKI 695 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48307.11939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig48307.11939.1 >prot_H-paniculata_contig48307.11939.1 ID=prot_H-paniculata_contig48307.11939.1|Name=mRNA_H-paniculata_contig48307.11939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp LHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHback to top mRNA from alignment at H-paniculata_contig48307:855..1061+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig48307.11939.1 ID=mRNA_H-paniculata_contig48307.11939.1|Name=mRNA_H-paniculata_contig48307.11939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig48307:855..1061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig48307:855..1061+ >mRNA_H-paniculata_contig48307.11939.1 ID=mRNA_H-paniculata_contig48307.11939.1|Name=mRNA_H-paniculata_contig48307.11939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig48307:855..1061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |