mRNA_H-paniculata_contig48306.11938.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48306.11938.1
Unique NamemRNA_H-paniculata_contig48306.11938.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig48306.11938.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 1.240e-65
Identity = 123/254 (48.43%), Postives = 166/254 (65.35%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDK----------PVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKATLFPRAVL 729
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G   +S            P R A+GS++W+S  +RPD++ AVRAVAR AH P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + RRSV+G+A  +GG+VVS  S TQ  V+LS++EAEY+A  +G K  LF RAVL
Sbjct:  678 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMGEEWPAREAIGSMVWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVAGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVL 929          
BLAST of mRNA_H-paniculata_contig48306.11938.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 3.900e-59
Identity = 122/282 (43.26%), Postives = 163/282 (57.80%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLS--------------------------------------DKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKATLFPRAVL 729
            ++++ +A+YGLKQ+GR W      +LV++ G  Q ++DPCVFR   +G V  I+ ++VDD++  G   + + L  +LR        GE  WY GCA  RD+  G   LS                                      DKPVR A+G L+W +  TRPDIA+A+ AV R AH PT R WKA+V+I+SYL  T DLG+ + RG  L+L VYVDA YAD+   RRSV+G+AV +GG+VVS  S TQ  V+LSTSEAEY+A  +G K  LF RAVL
Sbjct:  877 VLKVERALYGLKQSGREWGFEAANILVDS-GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1157          
BLAST of mRNA_H-paniculata_contig48306.11938.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 4.220e-59
Identity = 122/282 (43.26%), Postives = 163/282 (57.80%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLS--------------------------------------DKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKATLFPRAVL 729
            ++++ +A+YGLKQ+GR W      +LV++ G  Q ++DPCVFR   +G V  I+ ++VDD++  G   + + L  +LR        GE  WY GCA  RD+  G   LS                                      DKPVR A+G L+W +  TRPDIA+A+ AV R AH PT R WKA+V+I+SYL  T DLG+ + RG  L+L VYVDA YAD+   RRSV+G+AV +GG+VVS  S TQ  V+LSTSEAEY+A  +G K  LF RAVL
Sbjct: 1430 VLKVERALYGLKQSGREWGFEAANILVDS-GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1710          
BLAST of mRNA_H-paniculata_contig48306.11938.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.400e-56
Identity = 120/283 (42.40%), Postives = 155/283 (54.77%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKATLFPRAV 726
            IV+LNK++YGLKQA R W   L   L+  +G  Q  +D CVFRL + G V + L VHVDD+   G+  +CD     L         G+L+WY GC + RD   G                                      DE++   P R  +GSL+WL+  TRPDIA+AVRAVAR   +P + HW+A + I+ Y+ RT DLG+ F RG    L++ V+VDADYA K+  RRSVSG  VM GG  +S  S TQ CVTLST+EAEYV++A   K  LF R V
Sbjct:   68 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV 349          
BLAST of mRNA_H-paniculata_contig48306.11938.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 4.260e-55
Identity = 120/283 (42.40%), Postives = 155/283 (54.77%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKATLFPRAV 726
            IV+LNK++YGLKQA R W   L   L+  +G  Q  +D CVFRL + G V + L VHVDD+   G+  +CD     L         G+L+WY GC + RD   G                                      DE++   P R  +GSL+WL+  TRPDIA+AVRAVAR   +P + HW+A + I+ Y+ RT DLG+ F RG    L++ V+VDADYA K+  RRSVSG  VM GG  +S  S TQ CVTLST+EAEYV++A   K  LF R V
Sbjct:  242 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV 523          
BLAST of mRNA_H-paniculata_contig48306.11938.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 6.420e-55
Identity = 106/234 (45.30%), Postives = 148/234 (63.25%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAK 702
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+     +      +   +    G        R DE+  + PVR A+GS++W+S  +RPD++ AVRAVAR AH P  R+W A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + RRSVSG+A  +GG+V+S  S TQ  V+LS++EAEY+A   G K
Sbjct:  178 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEECQCMVERFDVKSTSRIPATPGADLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRNWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVLSHGSKTQSIVSLSSTEAEYIAAEDGVK 407          
BLAST of mRNA_H-paniculata_contig48306.11938.1 vs. uniprot
Match: A0A6H5JZ67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ67_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.070e-54
Identity = 112/244 (45.90%), Postives = 156/244 (63.93%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKATLFPRAVL 729
            IV+  +A+ GLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ V++DD++VAG    C  L A+L  +F T   GE + + GCA  RD+    E  + K  ++A+    W+S  +RPD++ AVRAV R AH    RHW A+ K++SYLK T+DLG+ ++R   L ++VYV+A Y D  +  RSVSG+A  +GG+VVS  S TQ  V+LS++EAEY+A  +G K  LF RAVL
Sbjct:  265 IVKAERAIRGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVVYLDDILVAGSDEDCKGLLASLNKKFPTKNLGECERFDGCAIERDV----ESTTLKISQTAI---TWVSTCSRPDVSFAVRAVERHAHALAKRHWDAIRKVLSYLKETRDLGITYQRRSGLGMAVYVNASYVDTED-NRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAGGEGVKEALFVRAVL 499          
BLAST of mRNA_H-paniculata_contig48306.11938.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 4.610e-54
Identity = 110/245 (44.90%), Postives = 152/245 (62.04%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDI--VRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKATLFPRAVL 729
            IV+  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG            R + Q+T      ++      D+   R +E   + PVR A+GS++W+S  +RPD++ AV AV R AH P  RHW A+ KI+ YL  T+ LG+ ++RG  L L+VYVDA YAD  + RRSVSG+A  +GG+VVS  S  Q  V+L ++EAEY+A  +G K  LF RAVL
Sbjct:   45 IVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGM---------VRRFDVQSTS-----HIPATPGADLGPKRDNEKGGEWPVREAIGSMVWVSTFSRPDVSFAVPAVVRHAHAPAKRHWDAIQKILGYLTGTRYLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKMQTIVSLYSTEAEYIAAGEGVKEALFVRAVL 273          
BLAST of mRNA_H-paniculata_contig48306.11938.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.320e-53
Identity = 110/279 (39.43%), Postives = 153/279 (54.84%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKATLFPR 720
            +V++ +A+Y LKQ+GR W     + L+ N G  Q + DPCVFR   +G V  ++ ++VDD++VA    + + LFA+L  EF     GE  WY GCA   D+  G                                      DE   DKPVR A+G L+W   +TRPDIA  +  + + AH+PT R W A+V+I+SYL  TKD G+ + RG  L+ SV+VDA YAD    RRS +G+AV +GG+VV A++ TQ     STSEAE++A  +G K  LF R
Sbjct:    5 VVKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDRSVFVDASYADNEVDRRSTTGLAVTVGGTVVCASTKTQPLTAQSTSEAEHMAAGEGVKEALFVR 281          
BLAST of mRNA_H-paniculata_contig48306.11938.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.530e-53
Identity = 112/282 (39.72%), Postives = 155/282 (54.96%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVTLSTSEAEYVAMAQGAKATLFPRAVL 729
            +V++ +A+Y LKQ+GR W     + L+ N G  Q + DPCVFR   +G V  ++ ++VDD++VA    + + LFA+L  +F     GE  WY GCA   D+  G                                      DE   DKPVR A+G L+W   +TRPDIA  +  + + A +PT R W A+V+I+SYL  TKD G+ + RG  L+LSV+VDA YAD    RRS +G+AV +GG+VV A++ TQ     STSEAEY+A  +G K  LF R VL
Sbjct:    5 VVKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYVESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIALPLNKLQKIAQSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLSVFVDASYADNEVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTSEAEYMAAGEGVKEALFVRGVL 284          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48306.11938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTV6_9PHAE1.240e-6548.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE3.900e-5943.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE4.220e-5943.26Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE1.400e-5642.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE4.260e-5542.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFN5_9PHAE6.420e-5545.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ67_9PHAE2.070e-5445.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KLY3_9PHAE4.610e-5444.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KW89_9PHAE1.320e-5339.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWY8_9PHAE1.530e-5339.72Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48306contigH-paniculata_contig48306:573..1415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score137.5
Seed ortholog evalue8e-30
Seed eggNOG ortholog7029.ACYPI061271-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size729
Cds size708
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48306.11938.1prot_H-paniculata_contig48306.11938.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48306 573..1394 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930431.2519968-CDS-H-paniculata_contig48306:572..9921622930431.2519968-CDS-H-paniculata_contig48306:572..992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48306 573..992 -
1691481289.2747297-CDS-H-paniculata_contig48306:572..9921691481289.2747297-CDS-H-paniculata_contig48306:572..992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48306 573..992 -
1622930431.2706962-CDS-H-paniculata_contig48306:1106..13941622930431.2706962-CDS-H-paniculata_contig48306:1106..1394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48306 1107..1394 -
1691481289.2891486-CDS-H-paniculata_contig48306:1106..13941691481289.2891486-CDS-H-paniculata_contig48306:1106..1394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48306 1107..1394 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930431.2853155-UTR-H-paniculata_contig48306:1394..14151622930431.2853155-UTR-H-paniculata_contig48306:1394..1415Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48306 1395..1415 -
1691481289.3008854-UTR-H-paniculata_contig48306:1394..14151691481289.3008854-UTR-H-paniculata_contig48306:1394..1415Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48306 1395..1415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48306.11938.1

>prot_H-paniculata_contig48306.11938.1 ID=prot_H-paniculata_contig48306.11938.1|Name=mRNA_H-paniculata_contig48306.11938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVH
VDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDL
SDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIIS
YLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVV
SATSTTQHCVTLSTSEAEYVAMAQGAKATLFPRAVL
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mRNA from alignment at H-paniculata_contig48306:573..1415-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48306.11938.1 ID=mRNA_H-paniculata_contig48306.11938.1|Name=mRNA_H-paniculata_contig48306.11938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=843bp|location=Sequence derived from alignment at H-paniculata_contig48306:573..1415- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTAAGGCTGAATAAGGCTATGTATGGGCTCAAGCAGGCAGGACGGAT GTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAACAACGTCGGCATGACGC AATCCAAGTCTGACCCTTGTGTGTTTAGGCTCGAGAAAAATGGGGTGGTA GATATGATTCTGTGTGTTCATGTAGATGATGTAATTGTTGCTGGTAAAAG TGTGAAGTGCGATTCTCTGTTTGCAGCGTTGAGGGCGGAGTTCCAAACCA CGAGAGGCGAACTCAAGTGGTACCTGGGTTGTGCATTTTGGCGTGACATA GTGAGGGGAGTTGTCCGCATCACGCAACGGACATTCGTTGATACTGTCGT TAAACGCTTCGACGTGGAAACCGAGTCTAACCTTCCTGCGTCTCAGCAGG CAGATCTTGGGCCTAGGAGGGAGGATGAGGATTTGTCTGACAAGCCTGTG CGCTCGGCTGTTGGGAGTTTGATATGGCTAAGTGGTATGACGAGACCTGA CATAGCCAGTGCAGTACGGGCAGTAGCGAGGCAAGCGCACAATCCGACAG ATAGGCACTGGAAAGCAGTGGTAAAGATCATCTCGTATCTTAAGAGAACA AAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGAGATCTTAATTTGTCAGT TTATGTAGACGCAGATTATGCGGATAAGTCCAACTGGAGGCGTTCAGTTT CAGGCGTGGCAGTAATGTTAGGGGGGAGTGTAGTGAGCGCTACCAGCACG ACACAACACTGTGTGACTCTTTCCACTAGTGAGGCAGAGTACGTAGCTAT GGCGCAAGGGGCTAAGGCAACACTTTTCCCGAGAGCTGTACTA
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Coding sequence (CDS) from alignment at H-paniculata_contig48306:573..1415-

>mRNA_H-paniculata_contig48306.11938.1 ID=mRNA_H-paniculata_contig48306.11938.1|Name=mRNA_H-paniculata_contig48306.11938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig48306:573..1415- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGGGCTCAAGCAGGCAGGACGGATGTGGTCAAAGCGCCTTGTAGA
AGTACTCGTAAACAACGTCGGCATGACGCAATCCAAGTCTGACCCTTGTG
TGTTTAGGCTCGAGAAAAATGGGGTGGTAGATATGATTCTGTGTGTTCAT
GTAGATGATGTAATTGTTGCTGGTAAAAGTGTGAAGTGCGATTCTCTGTT
TGCAGCGTTGAGGGCGGAGTTCCAAACCACGAGAGGCGAACTCAAGTGGT
ACCTGGGTTGTGCATTTTGGCGTGACATAGTGAGGGGAATGTATGGGCTC
AAGCAGGCAGGACGGATGTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAA
CAACGTCGGCATGACGCAATCCAAGTCTGACCCTTGTGTGTTTAGGCTCG
AGAAAAATGGGGTGGTAGATATGATTCTGTGTGTTCATGTAGATGATGTA
ATTGTTGCTGGTAAAAGTGTGAAGTGCGATTCTCTGTTTGCAGCGTTGAG
GGCGGAGTTCCAAACCACGAGAGGCGAACTCAAGTGGTACCTGGGTTGTG
CATTTTGGCGTGACATAGTGAGGGGAGATGAGGATTTGTCTGACAAGCCT
GTGCGCTCGGCTGTTGGGAGTTTGATATGGCTAAGTGGTATGACGAGACC
TGACATAGCCAGTGCAGTACGGGCAGTAGCGAGGCAAGCGCACAATCCGA
CAGATAGGCACTGGAAAGCAGTGGTAAAGATCATCTCGTATCTTAAGAGA
ACAAAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGAGATCTTAATTTGTC
AGTTTATGTAGACGCAGATTATGCGGATAAGTCCAACTGGAGGCGTTCAG
TTTCAGGCGTGGCAGTAATGTTAGGGGGGAGTGTAGTGAGCGCTACCAGC
ACGACACAACACTGTGTGACTCTTTCCACTAGTGAGGCAGAGTACGTAGC
TATGGCGCAAGGGGCTAAGGCAACACTTTTCCCGAGAGCTGTACTAGATG
AGGATTTGTCTGACAAGCCTGTGCGCTCGGCTGTTGGGAGTTTGATATGG
CTAAGTGGTATGACGAGACCTGACATAGCCAGTGCAGTACGGGCAGTAGC
GAGGCAAGCGCACAATCCGACAGATAGGCACTGGAAAGCAGTGGTAAAGA
TCATCTCGTATCTTAAGAGAACAAAAGACTTGGGGCTAGTGTTCGAAAGG
GGTAGAGATCTTAATTTGTCAGTTTATGTAGACGCAGATTATGCGGATAA
GTCCAACTGGAGGCGTTCAGTTTCAGGCGTGGCAGTAATGTTAGGGGGGA
GTGTAGTGAGCGCTACCAGCACGACACAACACTGTGTGACTCTTTCCACT
AGTGAGGCAGAGTACGTAGCTATGGCGCAAGGGGCTAAGGCAACACTTTT
CCCGAGAGCTGTACTA
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