mRNA_H-paniculata_contig4830.11937.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4830.11937.1 vs. uniprot
Match: A0A835YRV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRV6_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.250e-39 Identity = 85/146 (58.22%), Postives = 112/146 (76.71%), Query Frame = 1
Query: 1981 QYKVTGRSGATVRSGEPLDSPIQCTLTPGTIVEVTQVRGRRCCIVSPVKGWGSIATENGYVIIEPL-SARPRYRVVYPDGVIVRSAADIDDSDFVRVIAKGETVEGTGQVQMFDNVERIQIADGWISMRLRED-NGALGDVLLEKL 2412
Q++V GRSGATVR GE LDSP+ CTL+PGT+V V V+GRRC IV PVKGW S +TE GYVI+E + SARPRYRVV+ +GV+VR+AAD D+S+ VR++ GE +EGTG+V + VER++I DGW+S+ + +G G+ LL KL
Sbjct: 30 QFRVVGRSGATVRGGENLDSPLLCTLSPGTLVTVDLVKGRRCRIVEPVKGWASTSTEKGYVIVERVDSARPRYRVVFSEGVVVRTAADPDNSEPVRLLPSGEIIEGTGEVVSVEGVERVRIDDGWVSVTKPPNADGTPGEALLHKL 175
BLAST of mRNA_H-paniculata_contig4830.11937.1 vs. uniprot
Match: D7FVU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU7_ECTSI) HSP 1 Score: 147 bits (370), Expect = 4.890e-37 Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 1
Query: 1972 NKLQYKVTGRSGATVRSGEPLDSPIQCTLTPGTIVEVTQVRGRRCCIVSPVKGWGSIATENGYVIIEPLSARPRYRVVYPDGVIVRSAADIDDSDFVRVIAKGETVEGTGQVQMFDNVERIQIADGWISMRLREDNG 2382
N+ ++ V G GA+VR LDSPI TL GT+V V++VR RR IV PV GW S++TE+GY IIEP RY+VVY DG+IVRS A I+ + V+++ G+ ++ TG+ Q+ D VER+QI GW+SMRLREDNG
Sbjct: 4 NRDKFVVVGLKGASVRKELRLDSPILRTLRRGTVVSVSEVRQRRAHIVKPVNGWASLSTEDGYGIIEPTKRCSRYKVVYNDGIIVRSTAKIETGEVVKIVHPGDILKATGKTQILDGVERVQIDSGWVSMRLREDNG 140
BLAST of mRNA_H-paniculata_contig4830.11937.1 vs. uniprot
Match: D7FVU8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVU8_ECTSI) HSP 1 Score: 145 bits (367), Expect = 6.290e-36 Identity = 70/165 (42.42%), Postives = 110/165 (66.67%), Query Frame = 1
Query: 1909 AEGCILPTRVEHRYSLVLLNSNKLQYKVTGRSGATVRSGEPLDSPIQCTLTPGTIVEVTQVRGRRCCIVSPVKGWGSIATENGYVIIEPLSARPRYRVVYPDGVIVRSAADIDDSDFVRVIAKGETVEGTGQVQMFDNVERIQIADGWISMRLREDNGALGDVLL 2403
A+ C+ + E + + ++++ +Y+V G GATVR LDSP+ TL GT+V V QVR RR I+ P+ GW S++TE+GYVI+E ++ +Y+VVY +G+ VRS+ I+D VR+ G ++ TG+ ++FD VER+++ DGW+SMRLRED G+ +L+
Sbjct: 39 AKWCVDDSATERVF---VPDASRNKYQVVGLGGATVRMTARLDSPVLRTLPQGTVVVVAQVRSRRAHIIKPMDGWASLSTESGYVILEAIARPTKYKVVYREGIFVRSSPSIEDGRIVRIAPCGTVLKATGKTEIFDAVERVEVEDGWVSMRLREDKGSGAPLLM 200
BLAST of mRNA_H-paniculata_contig4830.11937.1 vs. uniprot
Match: D7G246_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G246_ECTSI) HSP 1 Score: 129 bits (325), Expect = 2.200e-27 Identity = 62/140 (44.29%), Postives = 94/140 (67.14%), Query Frame = 1
Query: 1969 SNKLQYKVTGRSGATVRSGEPLDSPIQCTLTPGTIVEVTQVRGRRCCIVSPVKGWGSIATENGYVIIEP-LSARPRYRVVYPDGVIVRSAADIDDSDFVRVIAKGETVEGTGQVQMFDNVERIQIADGWISMRLREDNGA 2385
+++ +Y V G GATVR + LDSP+ TL GT+VEV Q+R RR IV P+ GW S++T + Y I+EP ++ +Y+V+YP+G+ VR ++ S R+ G ++ TG+ +++D VERI++ DGW+SMRLR D GA
Sbjct: 401 ASRNKYVVVGLVGATVRVSKRLDSPVLRTLPKGTVVEVAQIRSRRAHIVKPIDGWASLSTVSSYRILEPPITQSTKYKVIYPEGIFVRRMVSLE-SRIARIAPFGTVLKATGRTEIYDAVERIEVEDGWVSMRLRNDTGA 539
BLAST of mRNA_H-paniculata_contig4830.11937.1 vs. uniprot
Match: A0A7S2Y0S5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0S5_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.080e-26 Identity = 68/158 (43.04%), Postives = 94/158 (59.49%), Query Frame = 1
Query: 2008 ATVRSGEPLDSPIQCTLTPGTIVEVTQVRGR----------------------RCCIVSPVKGWGSIATENGYVIIEPLS-ARPRYRVVYPDGVIVRSAADIDDSDFVRVIAKGETVEGTGQVQMFDNVERIQIADGWISMRLREDNGALGDVLLEKL 2412
ATVR+ E L+S I L GTIVEV ++R R I+SPV+GW S+ +++G ++E L + +YRV+YPDG++VR+ A+ID VR + GE VE TG+ ++ VERIQIADGWIS LRED A G+ LLE++
Sbjct: 1 ATVRTQEFLNSSIVQILPRGTIVEVCEIRESPNNLQPHDFNPLMLKTECTTRGRARILSPVEGWVSLQSDSGAALLEKLGEVKMKYRVIYPDGIVVRNKANIDQGRIVRSLEYGEIVEATGESIFYEGVERIQIADGWISRNLREDGDARGEFLLERV 158
BLAST of mRNA_H-paniculata_contig4830.11937.1 vs. uniprot
Match: D7FYK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYK1_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 8.680e-11 Identity = 30/34 (88.24%), Postives = 34/34 (100.00%), Query Frame = 1
Query: 2311 MFDNVERIQIADGWISMRLREDNGALGDVLLEKL 2412
MFDNVER+Q+ADGWISMRLRED+GALGDVLLEK+
Sbjct: 1 MFDNVERVQVADGWISMRLREDDGALGDVLLEKI 34 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4830.11937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4830.11937.1 >prot_H-paniculata_contig4830.11937.1 ID=prot_H-paniculata_contig4830.11937.1|Name=mRNA_H-paniculata_contig4830.11937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp MTCFVAEGCILPTRVEHRYSLVLLNSNKLQYKVTGRSGATVRSGEPLDSPback to top mRNA from alignment at H-paniculata_contig4830:8884..14845+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4830.11937.1 ID=mRNA_H-paniculata_contig4830.11937.1|Name=mRNA_H-paniculata_contig4830.11937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5962bp|location=Sequence derived from alignment at H-paniculata_contig4830:8884..14845+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4830:8884..14845+ >mRNA_H-paniculata_contig4830.11937.1 ID=mRNA_H-paniculata_contig4830.11937.1|Name=mRNA_H-paniculata_contig4830.11937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig4830:8884..14845+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |