mRNA_H-paniculata_contig48267.11927.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48267.11927.1
Unique NamemRNA_H-paniculata_contig48267.11927.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48267.11927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48267contigH-paniculata_contig48267:15..254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930429.8249416-CDS-H-paniculata_contig48267:14..2541622930429.8249416-CDS-H-paniculata_contig48267:14..254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48267 15..254 -
1691481288.4257572-CDS-H-paniculata_contig48267:14..2541691481288.4257572-CDS-H-paniculata_contig48267:14..254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48267 15..254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48267.11927.1prot_H-paniculata_contig48267.11927.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48267 15..254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48267.11927.1

>prot_H-paniculata_contig48267.11927.1 ID=prot_H-paniculata_contig48267.11927.1|Name=mRNA_H-paniculata_contig48267.11927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MWVSDSVASNHMTNDLAKMYDIRKPVAGEDVVMLGDGSILVVDLVGKLEL
IFHSTTDVPATLEVSYLPELNFNLFSLHNI
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mRNA from alignment at H-paniculata_contig48267:15..254-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48267.11927.1 ID=mRNA_H-paniculata_contig48267.11927.1|Name=mRNA_H-paniculata_contig48267.11927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig48267:15..254- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGTTTCTGATTCTGTCGCAAGTAACCACATGACGAACGATCTTGC
GAAAATGTATGATATTCGCAAGCCGGTGGCAGGGGAAGATGTGGTAATGT
TGGGGGATGGATCGATTCTGGTGGTAGATTTGGTGGGAAAGTTGGAGTTG
ATTTTTCACTCCACCACTGACGTGCCTGCCACACTTGAAGTATCATACTT
ACCGGAGTTGAACTTCAACCTTTTTTCCCTCCACAACATC
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Coding sequence (CDS) from alignment at H-paniculata_contig48267:15..254-

>mRNA_H-paniculata_contig48267.11927.1 ID=mRNA_H-paniculata_contig48267.11927.1|Name=mRNA_H-paniculata_contig48267.11927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig48267:15..254- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGTTTCTGATTCTGTCGCAAGTAACCACATGACGAACGATCTTGC
GAAAATGTATGATATTCGCAAGCCGGTGGCAGGGGAAGATGTGGTAATGT
TGGGGGATGGATCGATTCTGGTGGTAGATTTGGTGGGAAAGTTGGAGTTG
ATTTTTCACTCCACCACTGACGTGCCTGCCACACTTGAAGTATCATACTT
ACCGGAGTTGAACTTCAACCTTTTTTCCCTCCACAACATCATGTGGGTTT
CTGATTCTGTCGCAAGTAACCACATGACGAACGATCTTGCGAAAATGTAT
GATATTCGCAAGCCGGTGGCAGGGGAAGATGTGGTAATGTTGGGGGATGG
ATCGATTCTGGTGGTAGATTTGGTGGGAAAGTTGGAGTTGATTTTTCACT
CCACCACTGACGTGCCTGCCACACTTGAAGTATCATACTTACCGGAGTTG
AACTTCAACCTTTTTTCCCTCCACAACATC
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