prot_H-paniculata_contig4826.11926.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4826.11926.1
Unique Nameprot_H-paniculata_contig4826.11926.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length215
Homology
BLAST of mRNA_H-paniculata_contig4826.11926.1 vs. uniprot
Match: D7FW65_ECTSI (SNRNP27 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW65_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.010e-53
Identity = 113/166 (68.07%), Postives = 126/166 (75.90%), Query Frame = 0
Query:   51 SPPRRRFREEGDXXXXXXXXXXKAKANDSKIE---AGEISKPSKQEQRRANNAVKRQKMLEEERRQKEKVKHRLDLIRQMKGERRESGDEDAAGSGSDGEDGDEELTEEQQMMKLMGFAGFDTTKGKHVAENSRGPAKGAVSKHKKRVYRQYMNRRGGFNRPLDEM 213
            SPPRR FRE+G     XXXXXX               E SKPSKQE RRA  A+KRQKMLEE++R+K+KVK RL LIRQMKG+   SG+EDA GSGSDG+     LTEEQQMMKLMGFAGFDTTKGK V +N RGPAKGA+SKHK+R YRQYMNRRGGFNRPLD+M
Sbjct:   45 SPPRRHFREDGGKDAAXXXXXXXXXXXXXXXXXXTTSETSKPSKQEARRAEAAIKRQKMLEEQQREKDKVKDRLHLIRQMKGDA--SGEEDALGSGSDGDXXXXXLTEEQQMMKLMGFAGFDTTKGKGVEDNQRGPAKGAISKHKEREYRQYMNRRGGFNRPLDKM 208          
BLAST of mRNA_H-paniculata_contig4826.11926.1 vs. uniprot
Match: A0A835ZFB0_9STRA (SNRNP27 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFB0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.140e-22
Identity = 45/62 (72.58%), Postives = 55/62 (88.71%), Query Frame = 0
Query:  153 LTEEQQMMKLMGFAGFDTTKGKHVAENSRGPAKGAVSKHKKRVYRQYMNRRGGFNRPLDEMP 214
            ++EEQQMM+++GF GFD+TKGK V +N +G AKGAVSKHK+R YRQYMNRRGGFNRPL +MP
Sbjct:  162 MSEEQQMMRMLGFGGFDSTKGKAVEDNKKGAAKGAVSKHKERKYRQYMNRRGGFNRPLAKMP 223          
BLAST of mRNA_H-paniculata_contig4826.11926.1 vs. uniprot
Match: A0A5D6YFD5_9STRA (SNRNP27 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFD5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 9.650e-19
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 0
Query:  153 LTEEQQMMKLMGFAGFDTTKGKHVAENSRGPAKGAVSKHKKRVYRQYMNRRGGFNRPLD 211
            LTEE+QM  LMGF GFD+TKGK V +N++G A GAV K KKR YRQYMNRRGGFNRPL+
Sbjct:  196 LTEEEQMQALMGFGGFDSTKGKPVEDNAKGVAAGAVGKEKKRQYRQYMNRRGGFNRPLE 254          
BLAST of mRNA_H-paniculata_contig4826.11926.1 vs. uniprot
Match: A0A482S2G0_9ARCH (DUF1777 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2G0_9ARCH)

HSP 1 Score: 89.4 bits (220), Expect = 1.520e-18
Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 0
Query:  141 GSGSDGEDGD--EELTEEQQMMKLMGFAGFDTTKGKHVAENSRGPAKGAVSKHKKRVYRQYMNRRGGFNRPLDEM 213
            GS  DGE G+  +E  EE+ +  LMGFAGF +TKGK V +N+ G A G VSKHK R YRQYMNR+GGFNRPL +M
Sbjct:  121 GSAPDGEGGEFADEEDEEEDVAMLMGFAGFGSTKGKQVEDNAHGAAAGGVSKHKARKYRQYMNRKGGFNRPLQKM 195          
BLAST of mRNA_H-paniculata_contig4826.11926.1 vs. uniprot
Match: K3WFH3_GLOUD (SNRNP27 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFH3_GLOUD)

HSP 1 Score: 90.1 bits (222), Expect = 1.850e-18
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0
Query:  153 LTEEQQMMKLMGFAGFDTTKGKHVAENSRGPAKGAVSKHKKRVYRQYMNRRGGFNRPLDE 212
            LTEE+QM  LMGF GFD+TKGK V +N++G A G V K  KR YRQYMNRRGGFNRPLD+
Sbjct:  178 LTEEEQMQALMGFGGFDSTKGKVVEDNAKGVATGGVRKESKRAYRQYMNRRGGFNRPLDQ 237          
BLAST of mRNA_H-paniculata_contig4826.11926.1 vs. uniprot
Match: A0A2D4C0V1_PYTIN (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0V1_PYTIN)

HSP 1 Score: 87.8 bits (216), Expect = 5.360e-18
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0
Query:  153 LTEEQQMMKLMGFAGFDTTKGKHVAENSRGPAKGAVSKHKKRVYRQYMNRRGGFNRPLD 211
            L+EE+QM  L+GF GFD+TKGK V +N+ GPA GA  K  KR YRQYMNRRGGFNRPLD
Sbjct:  133 LSEEEQMQMLLGFGGFDSTKGKSVEDNAVGPAAGAARKETKREYRQYMNRRGGFNRPLD 191          
BLAST of mRNA_H-paniculata_contig4826.11926.1 vs. uniprot
Match: A0A7S3PY04_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PY04_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.180e-17
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0
Query:  151 EELTEEQQMMKLMGFAGFDTTKGKHVAENSRGPAKGAVSKHKKRVYRQYMNRRGGFNRPLDEM 213
            E + EE QMMKL+GF GFD+TK K V +N    A+G+ +K+K R YRQYMNR+GGFNRPLD+M
Sbjct:  110 EGMDEEDQMMKLLGFGGFDSTKDKEVEDNKNSLARGSAAKNKARKYRQYMNRKGGFNRPLDKM 172          
BLAST of mRNA_H-paniculata_contig4826.11926.1 vs. uniprot
Match: A0A8J2S3F1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S3F1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 6.490e-17
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 0
Query:  151 EELTEEQQMMKLMGFAGFDTTKGKHVAENSRGPAKGAVSKHKKRVYRQYMNRRGGFNRPLDEM 213
            E+ +EE QM +LMGF GF +TKGK VA+N  G A+GAV K++ R YRQYMNRRGGFNRPL+ +
Sbjct:  169 EDDSEEAQMARLMGFGGFGSTKGKEVADNQHGAARGAVKKNQNRSYRQYMNRRGGFNRPLENI 231          
BLAST of mRNA_H-paniculata_contig4826.11926.1 vs. uniprot
Match: A0A8K1CDQ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDQ2_PYTOL)

HSP 1 Score: 84.7 bits (208), Expect = 1.060e-16
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0
Query:  151 EELTEEQQMMKLMGFAGFDTTKGKHVAENSRGPAKGAVSKHKKRVYRQYMNRRGGFNRPLDEMP 214
            ++L+EE+QM  L+GF GFD+TKGK V +N  G A GAV K  KR YRQYMNRRGGFNRPL+  P
Sbjct:  143 QQLSEEEQMRLLLGFGGFDSTKGKAVEDNVEGAATGAVRKDIKREYRQYMNRRGGFNRPLETPP 206          
BLAST of mRNA_H-paniculata_contig4826.11926.1 vs. uniprot
Match: A0A0P1B3N2_PLAHL (U4 small nuclear ribonucleoprotein 27 kDa n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B3N2_PLAHL)

HSP 1 Score: 82.0 bits (201), Expect = 1.210e-16
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 0
Query:  152 ELTEEQQMMKLMGFAGFDTTKGKHVAENSRGPAKGAVSKHKKRVYRQYMNRRGGFNRPLDE 212
            +L+EE+QM  L+GF GFD+TKGK V EN++  A G   +  KR YRQYMNRRGGFNRPLD+
Sbjct:   51 QLSEEEQMKLLLGFQGFDSTKGKEVDENAKSAAVGTARRETKREYRQYMNRRGGFNRPLDK 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4826.11926.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW65_ECTSI1.010e-5368.07SNRNP27 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835ZFB0_9STRA2.140e-2272.58SNRNP27 domain-containing protein n=1 Tax=Tribonem... [more]
A0A5D6YFD5_9STRA9.650e-1972.88SNRNP27 domain-containing protein n=1 Tax=Pythium ... [more]
A0A482S2G0_9ARCH1.520e-1861.33DUF1777 domain-containing protein n=1 Tax=archaeon... [more]
K3WFH3_GLOUD1.850e-1870.00SNRNP27 domain-containing protein n=1 Tax=Globispo... [more]
A0A2D4C0V1_PYTIN5.360e-1869.49U4/U6.U5 small nuclear ribonucleoprotein 27 kDa pr... [more]
A0A7S3PY04_9STRA5.180e-1761.90Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A8J2S3F1_9STRA6.490e-1763.49Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8K1CDQ2_PYTOL1.060e-1664.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1B3N2_PLAHL1.210e-1662.30U4 small nuclear ribonucleoprotein 27 kDa n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 90..127
NoneNo IPR availablePANTHERPTHR31077FAMILY NOT NAMEDcoord: 2..213
NoneNo IPR availablePANTHERPTHR31077:SF1SMALL NUCLEAR RIBONUCLEOPROTEIN U4/U6.U5 SUBUNIT 27coord: 2..213
IPR013957U4/U6.U5 small nuclear ribonucleoprotein 27kDa proteinPFAMPF08648SNRNP27coord: 155..212
e-value: 1.5E-28
score: 98.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4826contigH-paniculata_contig4826:12177..14483 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4826.11926.1mRNA_H-paniculata_contig4826.11926.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4826 11786..14562 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4826.11926.1 ID=prot_H-paniculata_contig4826.11926.1|Name=mRNA_H-paniculata_contig4826.11926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=215bp
MKRSRSRSRERGVRDDRGRAGDRDRSDREDGYSRRGRDRDEERDRSRRKT
SPPRRRFREEGDFDRDNGKDKTKAKANDSKIEAGEISKPSKQEQRRANNA
VKRQKMLEEERRQKEKVKHRLDLIRQMKGERRESGDEDAAGSGSDGEDGD
EELTEEQQMMKLMGFAGFDTTKGKHVAENSRGPAKGAVSKHKKRVYRQYM
NRRGGFNRPLDEMP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013957SNRNP27