mRNA_H-paniculata_contig48216.11919.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48216.11919.1
Unique NamemRNA_H-paniculata_contig48216.11919.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig48216.11919.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 2.170e-60
Identity = 116/254 (45.67%), Postives = 160/254 (62.99%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDK----------PVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWKRSVSNVAVMLVVSVFCATSTKPHCVTLSTSEAEYVAMAQGAKAALFTRAVL 729
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G   +S            P R A+GS++W+S  +RPD++ AVRAVAR AH P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + +RSV+ +A  +  +V    S     V+LS++EAEY+A  +G K ALF RAVL
Sbjct:  678 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMGEEWPAREAIGSMVWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVAGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVL 929          
BLAST of mRNA_H-paniculata_contig48216.11919.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 4.990e-54
Identity = 115/282 (40.78%), Postives = 157/282 (55.67%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLS--------------------------------------DKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWKRSVSNVAVMLVVSVFCATSTKPHCVTLSTSEAEYVAMAQGAKAALFTRAVL 729
            ++++ +A+YGLKQ+GR W      +LV++ G  Q ++DPCVFR   +G V  I+ ++VDD++  G   + + L  +LR        GE  WY GCA  RD+  G   LS                                      DKPVR A+G L+W +  TRPDIA+A+ AV R AH PT R WKA+V+I+SYL  T DLG+ + RG  L+L VYVDA YAD+   +RSV+ +AV +  +V    S     V+LSTSEAEY+A  +G K ALF RAVL
Sbjct:  877 VLKVERALYGLKQSGREWGFEAANILVDS-GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1157          
BLAST of mRNA_H-paniculata_contig48216.11919.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 5.280e-54
Identity = 115/282 (40.78%), Postives = 157/282 (55.67%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLS--------------------------------------DKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWKRSVSNVAVMLVVSVFCATSTKPHCVTLSTSEAEYVAMAQGAKAALFTRAVL 729
            ++++ +A+YGLKQ+GR W      +LV++ G  Q ++DPCVFR   +G V  I+ ++VDD++  G   + + L  +LR        GE  WY GCA  RD+  G   LS                                      DKPVR A+G L+W +  TRPDIA+A+ AV R AH PT R WKA+V+I+SYL  T DLG+ + RG  L+L VYVDA YAD+   +RSV+ +AV +  +V    S     V+LSTSEAEY+A  +G K ALF RAVL
Sbjct: 1430 VLKVERALYGLKQSGREWGFEAANILVDS-GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1710          
BLAST of mRNA_H-paniculata_contig48216.11919.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 1.170e-50
Identity = 113/283 (39.93%), Postives = 148/283 (52.30%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYADKSNWKRSVSNVAVMLVVSVFCATSTKPHCVTLSTSEAEYVAMAQGAKAALFTRAV 726
            IV+LNK++YGLKQA R W   L   L+  +G  Q  +D CVFRL + G V + L VHVDD+   G+  +CD     L         G+L+WY GC + RD   G                                      DE++   P R  +GSL+WL+  TRPDIA+AVRAVAR   +P + HW+A + I+ Y+ RT DLG+ F RG    L++ V+VDADYA K+  +RSVS   VM         S    CVTLST+EAEYV++A   K  LF R V
Sbjct:   68 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV 349          
BLAST of mRNA_H-paniculata_contig48216.11919.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 2.890e-50
Identity = 112/283 (39.58%), Postives = 154/283 (54.42%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWKRSVSNVAVMLVVSVFCATSTKPHCVTL-STSEAEYVAMAQGAKAALFTRAVL 729
            +V++ +A+Y LKQ+GR W     + L+ N G  Q + DPCVFR   +G V  ++ ++VDD++VA    + + LFA+L  +F     GE  WY GCA   D+  G                                      DE   DKPVR A+G L+W   +TRPDIA  +  + + A +PT R W A+V+I+SYL  TKD G+ + RG  L+LSV+VDA YAD    +RS + +AV +  +V CA STK   VT  STSEAEY+A  +G K ALF R VL
Sbjct:    5 VVKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYVESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIALPLNKLQKIAQSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLSVFVDASYADNEVDRRSTTGLAVTVGGTVVCA-STKTQPVTAQSTSEAEYMAAGEGVKEALFVRGVL 284          
BLAST of mRNA_H-paniculata_contig48216.11919.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 2.970e-50
Identity = 116/284 (40.85%), Postives = 151/284 (53.17%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLS--VYVDADYADKSNWKRSVSNVAVMLVVSVFCATSTKPHCVTLSTSEAEYVAMAQGAKAALFTRAVL 729
            +VRLNK++YGLKQA R + KRLV  L   +G  QS SDPCV R      V  ++ +HVDD++ AG     + + AAL     T   GE++++LGCAF RD   G                                      DE   D P R  VGSL+W++  TRPDI++AVRAVAR +H P   HWKA  KI++YL  T  L L F+    ++ S  VYVDAD+A K+N +RSVS   V++        S    CV+ STSEAEY+AM  G K ALF   +L
Sbjct:  589 VVRLNKSLYGLKQASRTFYKRLVSEL-KRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGML 871          
BLAST of mRNA_H-paniculata_contig48216.11919.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 3.740e-50
Identity = 105/279 (37.63%), Postives = 149/279 (53.41%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWKRSVSNVAVMLVVSVFCATSTKPHCVTLSTSEAEYVAMAQGAKAALFTR 720
            +V++ +A+Y LKQ+GR W     + L+ N G  Q + DPCVFR   +G V  ++ ++VDD++VA    + + LFA+L  EF     GE  WY GCA   D+  G                                      DE   DKPVR A+G L+W   +TRPDIA  +  + + AH+PT R W A+V+I+SYL  TKD G+ + RG  L+ SV+VDA YAD    +RS + +AV +  +V CA++        STSEAE++A  +G K ALF R
Sbjct:    5 VVKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDRSVFVDASYADNEVDRRSTTGLAVTVGGTVVCASTKTQPLTAQSTSEAEHMAAGEGVKEALFVR 281          
BLAST of mRNA_H-paniculata_contig48216.11919.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 3.890e-50
Identity = 116/284 (40.85%), Postives = 151/284 (53.17%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLS--VYVDADYADKSNWKRSVSNVAVMLVVSVFCATSTKPHCVTLSTSEAEYVAMAQGAKAALFTRAVL 729
            +VRLNK++YGLKQA R + KRLV  L   +G  QS SDPCV R      V  ++ +HVDD++ AG     + + AAL     T   GE++++LGCAF RD   G                                      DE   D P R  VGSL+W++  TRPDI++AVRAVAR +H P   HWKA  KI++YL  T  L L F+    ++ S  VYVDAD+A K+N +RSVS   V++        S    CV+ STSEAEY+AM  G K ALF   +L
Sbjct:  856 VVRLNKSLYGLKQASRTFYKRLVSEL-KRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGML 1138          
BLAST of mRNA_H-paniculata_contig48216.11919.1 vs. uniprot
Match: A0A6H5JZ67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ67_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 2.460e-49
Identity = 106/244 (43.44%), Postives = 150/244 (61.48%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWKRSVSNVAVMLVVSVFCATSTKPHCVTLSTSEAEYVAMAQGAKAALFTRAVL 729
            IV+  +A+ GLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ V++DD++VAG    C  L A+L  +F T   GE + + GCA  RD+    E  + K  ++A+    W+S  +RPD++ AVRAV R AH    RHW A+ K++SYLK T+DLG+ ++R   L ++VYV+A Y D  +  RSVS +A  +  +V    S     V+LS++EAEY+A  +G K ALF RAVL
Sbjct:  265 IVKAERAIRGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVVYLDDILVAGSDEDCKGLLASLNKKFPTKNLGECERFDGCAIERDV----ESTTLKISQTAI---TWVSTCSRPDVSFAVRAVERHAHALAKRHWDAIRKVLSYLKETRDLGITYQRRSGLGMAVYVNASYVDTED-NRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAGGEGVKEALFVRAVL 499          
BLAST of mRNA_H-paniculata_contig48216.11919.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 2.480e-49
Identity = 100/236 (42.37%), Postives = 142/236 (60.17%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWKRSVSNVAVMLVVSVFCATSTKPHCVTLSTSEAEYVAMAQGAKAA 708
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+     +      +   +    G        R DE+  + PVR A+GS++W+S  +RPD++ AVRAVAR AH P  R+W A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + +RSVS +A  +  +V    S     V+LS++EAEY+A   G K A
Sbjct:  178 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEECQCMVERFDVKSTSRIPATPGADLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRNWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVLSHGSKTQSIVSLSSTEAEYIAAEDGVKEA 409          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48216.11919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTV6_9PHAE2.170e-6045.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE4.990e-5440.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE5.280e-5440.78Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE1.170e-5039.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWY8_9PHAE2.890e-5039.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE2.970e-5040.85Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KW89_9PHAE3.740e-5037.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRL9_9PHAE3.890e-5040.85Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JZ67_9PHAE2.460e-4943.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFN5_9PHAE2.480e-4942.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48216contigH-paniculata_contig48216:578..1420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score129.8
Seed ortholog evalue1.7e-27
Seed eggNOG ortholog6334.EFV48939
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,40FC4@6231,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
Exons2
Model size729
Cds size708
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48216.11919.1prot_H-paniculata_contig48216.11919.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48216 578..1399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930428.4962761-CDS-H-paniculata_contig48216:577..9971622930428.4962761-CDS-H-paniculata_contig48216:577..997Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48216 578..997 -
1691481287.7529843-CDS-H-paniculata_contig48216:577..9971691481287.7529843-CDS-H-paniculata_contig48216:577..997Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48216 578..997 -
1622930428.5142834-CDS-H-paniculata_contig48216:1111..13991622930428.5142834-CDS-H-paniculata_contig48216:1111..1399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48216 1112..1399 -
1691481287.7630012-CDS-H-paniculata_contig48216:1111..13991691481287.7630012-CDS-H-paniculata_contig48216:1111..1399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48216 1112..1399 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930428.5365727-UTR-H-paniculata_contig48216:1399..14201622930428.5365727-UTR-H-paniculata_contig48216:1399..1420Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48216 1400..1420 -
1691481287.7706892-UTR-H-paniculata_contig48216:1399..14201691481287.7706892-UTR-H-paniculata_contig48216:1399..1420Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48216 1400..1420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48216.11919.1

>prot_H-paniculata_contig48216.11919.1 ID=prot_H-paniculata_contig48216.11919.1|Name=mRNA_H-paniculata_contig48216.11919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVH
VDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDL
SDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIIS
YLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWKRSVSNVAVMLVVSVF
CATSTKPHCVTLSTSEAEYVAMAQGAKAALFTRAVL
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mRNA from alignment at H-paniculata_contig48216:578..1420-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48216.11919.1 ID=mRNA_H-paniculata_contig48216.11919.1|Name=mRNA_H-paniculata_contig48216.11919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=843bp|location=Sequence derived from alignment at H-paniculata_contig48216:578..1420- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTAAGGCTGAATAAGGCTATGTATGGGCTCAAGCAGGCAGGACGGAT GTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAACAACGTCGGCATGACGC AATCCAAGTCTGACCCTTGTGTGTTTAGGCTCGAGAAAAATGGGGTGGTA GATATGATTCTGTGTGTTCATGTAGATGATGTAATTGTTGCTGGTAAAAG TGTGAAGTGCGATTCTCTGTTTGCAGCGTTGAGGGCGGAGTTCCAAACCA CGAGAGGCGAACTCAAGTGGTACCTGGGTTGTGCATTTTGGCGTGACATA GTGAGGGGAGTTGTCCGCATCACGCAACGGACATTCGTTGATACTGTCGT TAAACGCTTCGACGTGGAAACCGAGTCTAACCTTCCTGCGTCTCAGCAGG CAGATCTTGGGCCTAGGAGGGAGGATGAGGATTTGTCTGACAAGCCTGTG CGCTCGGCTGTTGGGAGTTTGATATGGCTAAGTGGTATGACGAGACCTGA CATAGCCAGTGCAGTACGGGCAGTAGCGAGGCAAGCGCACAATCCGACAG ATAGGCACTGGAAAGCAGTGGTAAAGATCATCTCGTATCTTAAGAGAACA AAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGAGATCTTAATTTGTCAGT TTATGTAGACGCAGATTATGCGGATAAGTCCAACTGGAAGCGTTCAGTTT CAAACGTGGCAGTAATGTTAGTGGTGAGTGTATTCTGCGCTACCAGCACT AAACCACACTGTGTGACTCTTTCCACTAGTGAGGCAGAGTACGTAGCTAT GGCGCAAGGGGCTAAGGCAGCACTTTTCACGAGAGCTGTACTA
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Coding sequence (CDS) from alignment at H-paniculata_contig48216:578..1420-

>mRNA_H-paniculata_contig48216.11919.1 ID=mRNA_H-paniculata_contig48216.11919.1|Name=mRNA_H-paniculata_contig48216.11919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig48216:578..1420- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGGGCTCAAGCAGGCAGGACGGATGTGGTCAAAGCGCCTTGTAGA
AGTACTCGTAAACAACGTCGGCATGACGCAATCCAAGTCTGACCCTTGTG
TGTTTAGGCTCGAGAAAAATGGGGTGGTAGATATGATTCTGTGTGTTCAT
GTAGATGATGTAATTGTTGCTGGTAAAAGTGTGAAGTGCGATTCTCTGTT
TGCAGCGTTGAGGGCGGAGTTCCAAACCACGAGAGGCGAACTCAAGTGGT
ACCTGGGTTGTGCATTTTGGCGTGACATAGTGAGGGGAATGTATGGGCTC
AAGCAGGCAGGACGGATGTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAA
CAACGTCGGCATGACGCAATCCAAGTCTGACCCTTGTGTGTTTAGGCTCG
AGAAAAATGGGGTGGTAGATATGATTCTGTGTGTTCATGTAGATGATGTA
ATTGTTGCTGGTAAAAGTGTGAAGTGCGATTCTCTGTTTGCAGCGTTGAG
GGCGGAGTTCCAAACCACGAGAGGCGAACTCAAGTGGTACCTGGGTTGTG
CATTTTGGCGTGACATAGTGAGGGGAGATGAGGATTTGTCTGACAAGCCT
GTGCGCTCGGCTGTTGGGAGTTTGATATGGCTAAGTGGTATGACGAGACC
TGACATAGCCAGTGCAGTACGGGCAGTAGCGAGGCAAGCGCACAATCCGA
CAGATAGGCACTGGAAAGCAGTGGTAAAGATCATCTCGTATCTTAAGAGA
ACAAAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGAGATCTTAATTTGTC
AGTTTATGTAGACGCAGATTATGCGGATAAGTCCAACTGGAAGCGTTCAG
TTTCAAACGTGGCAGTAATGTTAGTGGTGAGTGTATTCTGCGCTACCAGC
ACTAAACCACACTGTGTGACTCTTTCCACTAGTGAGGCAGAGTACGTAGC
TATGGCGCAAGGGGCTAAGGCAGCACTTTTCACGAGAGCTGTACTAGATG
AGGATTTGTCTGACAAGCCTGTGCGCTCGGCTGTTGGGAGTTTGATATGG
CTAAGTGGTATGACGAGACCTGACATAGCCAGTGCAGTACGGGCAGTAGC
GAGGCAAGCGCACAATCCGACAGATAGGCACTGGAAAGCAGTGGTAAAGA
TCATCTCGTATCTTAAGAGAACAAAAGACTTGGGGCTAGTGTTCGAAAGG
GGTAGAGATCTTAATTTGTCAGTTTATGTAGACGCAGATTATGCGGATAA
GTCCAACTGGAAGCGTTCAGTTTCAAACGTGGCAGTAATGTTAGTGGTGA
GTGTATTCTGCGCTACCAGCACTAAACCACACTGTGTGACTCTTTCCACT
AGTGAGGCAGAGTACGTAGCTATGGCGCAAGGGGCTAAGGCAGCACTTTT
CACGAGAGCTGTACTA
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