mRNA_H-paniculata_contig48202.11916.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48202.11916.1
Unique NamemRNA_H-paniculata_contig48202.11916.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48202.11916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48202contigH-paniculata_contig48202:754..1369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size262
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48202.11916.1prot_H-paniculata_contig48202.11916.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48202 763..1284 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930428.2449813-UTR-H-paniculata_contig48202:753..7621622930428.2449813-UTR-H-paniculata_contig48202:753..762Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48202 754..762 -
1691481287.6635592-UTR-H-paniculata_contig48202:753..7621691481287.6635592-UTR-H-paniculata_contig48202:753..762Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48202 754..762 -
1622930428.3044677-UTR-H-paniculata_contig48202:1284..13691622930428.3044677-UTR-H-paniculata_contig48202:1284..1369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48202 1285..1369 -
1691481287.6975393-UTR-H-paniculata_contig48202:1284..13691691481287.6975393-UTR-H-paniculata_contig48202:1284..1369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48202 1285..1369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930428.2605326-CDS-H-paniculata_contig48202:762..8931622930428.2605326-CDS-H-paniculata_contig48202:762..893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48202 763..893 -
1691481287.6747775-CDS-H-paniculata_contig48202:762..8931691481287.6747775-CDS-H-paniculata_contig48202:762..893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48202 763..893 -
1622930428.2809057-CDS-H-paniculata_contig48202:1247..12841622930428.2809057-CDS-H-paniculata_contig48202:1247..1284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48202 1248..1284 -
1691481287.6855185-CDS-H-paniculata_contig48202:1247..12841691481287.6855185-CDS-H-paniculata_contig48202:1247..1284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48202 1248..1284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48202.11916.1

>prot_H-paniculata_contig48202.11916.1 ID=prot_H-paniculata_contig48202.11916.1|Name=mRNA_H-paniculata_contig48202.11916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MYDPGVACSSLTGTPTCTCSRYCREINVPKREKAEKERATCQSAKANEPN
LNVLL*
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mRNA from alignment at H-paniculata_contig48202:754..1369-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48202.11916.1 ID=mRNA_H-paniculata_contig48202.11916.1|Name=mRNA_H-paniculata_contig48202.11916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=616bp|location=Sequence derived from alignment at H-paniculata_contig48202:754..1369- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGATCTCAACGGCAACAGCAGCGGTCCCGTCAGAGCAGCCCTCCCATT
GATGAACGACATACCTGTGGAGAGTGCCAAGACGGATGTACGACCCAGGT
GTTGCCTGTTCCTCGTTAACAGGTGAAAATAGTTGTTACTACTTGAGCAG
GGTTGTGGTTCATGTTTGCACATTCCTCATTTTAAGGCTGCATGTTTTTC
TCTTCTTCTATGTGGTTGTTGTTGTTATTGGAGCGCTCTAAAACCATCAC
GAGCATATTTTAAAGTAACTAGAGAACTGATGTTGGGGCTTCATTGTGAC
CATTTAAACAAAGTCTTGCGTTGACACGCCGTACAGACACCACCACCAGG
CACCTGCTATATGACAATGAGGTATACTGGTTAGGCCCTGGTCATGTACT
TGGCAAAAATCCCTTCTTTTTGCCAACTTATCGTCACGTACTACTGATAA
TGCCTTGTTCTTATTTGGTATGGCAGGTACTCCAACATGCACGTGTTCGA
GATACTGCCGGGAGATCAATGTCCCTAAGCGGGAGAAAGCAGAGAAAGAG
CGTGCAACCTGCCAGTCAGCAAAAGCAAATGAGCCAAACTTAAATGTCTT
ACTGTAGACGCCTCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig48202:754..1369-

>mRNA_H-paniculata_contig48202.11916.1 ID=mRNA_H-paniculata_contig48202.11916.1|Name=mRNA_H-paniculata_contig48202.11916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig48202:754..1369- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACGACCCAGGTGTTGCCTGTTCCTCGTTAACAGATGTACGACCCAG
GTGTTGCCTGTTCCTCGTTAACAGGTACTCCAACATGCACGTGTTCGAGA
TACTGCCGGGAGATCAATGTCCCTAAGCGGGAGAAAGCAGAGAAAGAGCG
TGCAACCTGCCAGTCAGCAAAAGCAAATGAGCCAAACTTAAATGTCTTAC
TGTAGGTACTCCAACATGCACGTGTTCGAGATACTGCCGGGAGATCAATG
TCCCTAAGCGGGAGAAAGCAGAGAAAGAGCGTGCAACCTGCCAGTCAGCA
AAAGCAAATGAGCCAAACTTAAATGTCTTACTGTAG
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