mRNA_H-paniculata_contig48197.11913.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48197.11913.1
Unique NamemRNA_H-paniculata_contig48197.11913.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig48197.11913.1 vs. uniprot
Match: A0A6H5K4Y9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Y9_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.820e-8
Identity = 35/83 (42.17%), Postives = 42/83 (50.60%), Query Frame = 1 
Query:   19 WVADSGATAHMIPSNGLMFDYETCSNFLVTVANGETLPIEGYDKMLVWTKGRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKRG 267
            +VAD+GAT HM+ ++     YE C    V VA GET P  GY  + V    R       L RVAH P LD NL SL  +   G
Sbjct:  395 YVADTGATTHMLANSDGFVRYEECDR-RVRVAAGETFPTVGYGDVSVTLSSRDGTTDLILKRVAHTPRLDYNLISLTSLFDDG 476
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BLAST of mRNA_H-paniculata_contig48197.11913.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR)

HSP 1 Score: 55.8 bits (133), Expect = 5.890e-7
Identity = 28/87 (32.18%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:   19 WVADSGATAHMIPSNGLMFDYETCSNFL-VTVANGETLPIEGYDKMLVWTKGRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKRGLTV 276
            W+ DSGA+ H  P   ++ DY+T    + V  A G+   I G   + +  +G+G     +L +V HVPG+D+NL S  +++ +G  +
Sbjct:  306 WILDSGASEHFTPYKHVLIDYKTLDKPVEVNTAKGKLFGI-GTGNVHLTVEGQGGFTPITLHKVLHVPGMDSNLLSSNVLLGKGFEI 391
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BLAST of mRNA_H-paniculata_contig48197.11913.1 vs. uniprot
Match: A0A2P4YE33_9STRA (Polyprotein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YE33_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 6.780e-6
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:   19 WVADSGATAHMIPSNGLMFDYETCS-NFLVTVANGETLPIEGYDKM-LVWTKGRGEIHKFSLSRVAHVPGLDTNLFS 243
            W+ DSGATAHM P  G +F+Y   S    VT+A+G+ + + G   + LV   G    ++  +  V H+PGLD  L S
Sbjct:  169 WLIDSGATAHMTPHRGDLFEYTEMSVEMHVTIADGKKIRVAGTGSVRLVGIDG----NRIEMVEVLHIPGLDRRLLS 241
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BLAST of mRNA_H-paniculata_contig48197.11913.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.130e-6
Identity = 29/87 (33.33%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:   19 WVADSGATAHMIPSNGLMFDYETCSNFLVTVANGETLPIEGYDK-MLVWTKGRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKRGLTV 276
            W+ DSGA+AHM         +E      +T+A+G+   I G    +L    G  E+ +  +S V +VPGL TNL S++ + ++ L V
Sbjct:  275 WIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDV 361
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BLAST of mRNA_H-paniculata_contig48197.11913.1 vs. uniprot
Match: A0A7J0D6S2_9ERIC (Uncharacterized protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0D6S2_9ERIC)

HSP 1 Score: 50.4 bits (119), Expect = 4.260e-5
Identity = 32/82 (39.02%), Postives = 39/82 (47.56%), Query Frame = 1 
Query:   19 WVADSGATAHMIPS-NGLMFDYETCSNFLVTVANGETLPIEGYDKMLVWTKGRGEI----HKFSLSRVAHVPGLDTNLFSLQ 249
            W+ DSGAT H+    N L   +       VTV NG TLPI           G G +    H F L  V HVPG+ +NL S+Q
Sbjct:  226 WLLDSGATNHITGDLNNLHLHHPYQGTDQVTVGNGNTLPIHN--------TGNGPLPTPSHSFQLRNVLHVPGIQSNLLSVQ 299
[Close]
BLAST of mRNA_H-paniculata_contig48197.11913.1 vs. uniprot
Match: A0A7J0D6V2_9ERIC (Uncharacterized protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0D6V2_9ERIC)

HSP 1 Score: 50.4 bits (119), Expect = 4.460e-5
Identity = 32/82 (39.02%), Postives = 39/82 (47.56%), Query Frame = 1 
Query:   19 WVADSGATAHMIPS-NGLMFDYETCSNFLVTVANGETLPIEGYDKMLVWTKGRGEI----HKFSLSRVAHVPGLDTNLFSLQ 249
            W+ DSGAT H+    N L   +       VTV NG TLPI           G G +    H F L  V HVPG+ +NL S+Q
Sbjct:  159 WLLDSGATNHITGDLNNLHLHHPYQGTDQVTVGNGNTLPIHN--------TGNGPLPTPSHSFQLRNVLHVPGIQSNLLSVQ 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48197.11913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K4Y9_9PHAE4.820e-842.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A535F6U2_9CHLR5.890e-732.18DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A2P4YE33_9STRA6.780e-638.96Polyprotein n=1 Tax=Phytophthora palmivora var. pa... [more]
Q967L5_AEDAE7.130e-633.33Uncharacterized protein n=1 Tax=Aedes aegypti TaxI... [more]
A0A7J0D6S2_9ERIC4.260e-539.02Uncharacterized protein n=1 Tax=Actinidia rufa Tax... [more]
A0A7J0D6V2_9ERIC4.460e-539.02Uncharacterized protein n=1 Tax=Actinidia rufa Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48197contigH-paniculata_contig48197:228..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue6.6e-07
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930427.8189623-CDS-H-paniculata_contig48197:227..5121622930427.8189623-CDS-H-paniculata_contig48197:227..512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48197 228..512 -
1691481287.496077-CDS-H-paniculata_contig48197:227..5121691481287.496077-CDS-H-paniculata_contig48197:227..512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48197 228..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48197.11913.1prot_H-paniculata_contig48197.11913.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48197 228..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48197.11913.1

>prot_H-paniculata_contig48197.11913.1 ID=prot_H-paniculata_contig48197.11913.1|Name=mRNA_H-paniculata_contig48197.11913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
NGCEEFWVADSGATAHMIPSNGLMFDYETCSNFLVTVANGETLPIEGYDK
MLVWTKGRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKRGLTVCLK
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mRNA from alignment at H-paniculata_contig48197:228..512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48197.11913.1 ID=mRNA_H-paniculata_contig48197.11913.1|Name=mRNA_H-paniculata_contig48197.11913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig48197:228..512- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGGTTGTGAGGAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACAT
GATTCCGTCTAACGGATTAATGTTTGATTACGAAACCTGCAGTAATTTTC
TTGTGACGGTGGCTAACGGCGAAACGCTTCCGATTGAGGGATATGATAAG
ATGTTGGTATGGACGAAGGGTCGGGGCGAGATACACAAATTCAGCTTGAG
TCGTGTAGCGCATGTTCCGGGCCTGGACACAAATTTGTTTTCCCTACAGA
TTGTAGTAAAGCGGGGACTTACTGTCTGTTTGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig48197:228..512-

>mRNA_H-paniculata_contig48197.11913.1 ID=mRNA_H-paniculata_contig48197.11913.1|Name=mRNA_H-paniculata_contig48197.11913.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig48197:228..512- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGGTTGTGAGGAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACAT
GATTCCGTCTAACGGATTAATGTTTGATTACGAAACCTGCAGTAATTTTC
TTGTGACGGTGGCTAACGGCGAAACGCTTCCGATTGAGGGATATGATAAG
ATGTTGGTATGGACGAAGGGTCGGGGCGAGATACACAAATTCAGCTTGAG
TCGTGTAGCGCATGTTCCGGGCCTGGACACAAATTTGTTTTCCCTACAGA
TTGTAGTAAAGCGGGGACTTACTGTCTGTTTGAAGAATGGTTGTGAGGAG
TTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGATTCCGTCTAACGG
ATTAATGTTTGATTACGAAACCTGCAGTAATTTTCTTGTGACGGTGGCTA
ACGGCGAAACGCTTCCGATTGAGGGATATGATAAGATGTTGGTATGGACG
AAGGGTCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCATGT
TCCGGGCCTGGACACAAATTTGTTTTCCCTACAGATTGTAGTAAAGCGGG
GACTTACTGTCTGTTTGAAG
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