mRNA_H-paniculata_contig4819.11911.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4819.11911.1
Unique NamemRNA_H-paniculata_contig4819.11911.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4819.11911.1 vs. uniprot
Match: D7G6P5_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6P5_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 1.450e-81
Identity = 128/176 (72.73%), Postives = 148/176 (84.09%), Query Frame = 2 
Query: 2030 VTETVYFDVEIGGERAGRIVMGLYGNAAPLTVKNFVHLCTGEDGIGKIYKKPLHYEGSSFHRIIPDFMIQGGDFTHGTGVGGESIYGGKFDDEMFWPEIKHDKKGVLSMANAGKDTNGSQFFICTVATPWLNGKHIIFGQVDETDDSLSVVSKIEAVGSRNGTPSKKVEIVGSGLL 2557
            VT  VYFD+ IGG  AGRI MGL+GNA P TV+NF  LCTGE G GK+Y+KPLHY+GS+FHR+IP FM+QGGDFTHGTG GGESIYGGKFDDE F PE+ HDK GVLSMAN+GKDTNGSQFFICTV TPWLNGKH+IFGQV+E  +S+ +VS+IE +GSR+G  S+KVEI  SG L
Sbjct:   27 VTHRVYFDISIGGTEAGRITMGLFGNAVPKTVENFRQLCTGEAGPGKVYRKPLHYKGSAFHRVIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPPELIHDKPGVLSMANSGKDTNGSQFFICTVPTPWLNGKHVIFGQVEE--ESMELVSRIEKLGSRSGALSEKVEITDSGEL 200
[Close]
BLAST of mRNA_H-paniculata_contig4819.11911.1 vs. uniprot
Match: A0A835ZLK1_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLK1_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.840e-71
Identity = 117/174 (67.24%), Postives = 139/174 (79.89%), Query Frame = 2 
Query: 2030 VTETVYFDVEIGGERAGRIVMGLYGNAAPLTVKNFVHLCTGEDGIGKIYKKPLHYEGSSFHRIIPDFMIQGGDFTHGTGVGGESIYGGKFDDEMFWPEIKHDKKGVLSMANAGKDTNGSQFFICTVATPWLNGKHIIFGQVDETDDSLSVVSKIEAVGSRNGTPSKKVEIVGSG 2551
            VT+ V+FD+EI G+  GRIVMGLYG A P TV+NF  LCTGE G+GK+Y KPL Y+GSSFHRIIP FM+QGGDFTHGTG GGESIYGGKFDDE F  E+KH + G+LSMANAG +TNGSQFFI TVATPWL+GKH+IFG+V E    + VV  IE +GS++G P  KV++  SG
Sbjct:   24 VTKMVFFDMEIDGKPGGRIVMGLYGEAVPKTVENFRALCTGEKGVGKVYHKPLTYKGSSFHRIIPQFMLQGGDFTHGTGTGGESIYGGKFDDEAFPKELKHKEPGMLSMANAGPNTNGSQFFITTVATPWLDGKHVIFGKVLE---GMDVVKSIEKLGSQSGRPQAKVKVADSG 194
[Close]
BLAST of mRNA_H-paniculata_contig4819.11911.1 vs. uniprot
Match: A0A7S2U584_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U584_9EUKA)

HSP 1 Score: 231 bits (588), Expect = 8.340e-66
Identity = 120/180 (66.67%), Postives = 136/180 (75.56%), Query Frame = 2 
Query: 2027 QVTETVYFDVEIGGERAGRIVMGLYGNAAPLTVKNFVHLCTGEDGIGKIYKKPLHYEGSSFHRIIPDFMIQGGDFTHGTGVGGESIYGGKFDDEMFWPEIKHDKKGVLSMANAGKDTNGSQFFICTVATPWLNGKHIIFGQVDETDDSLSVVSKIEAVGSRNGTPSKKVEIVGSGLLR*E 2566
            +VT  V+FD+EIGGE+AGRIVMGLYG   P T +NF  LCTGE G GK   KPLHY+GSSFHRIIP FMIQGGDFT G G GGESIYG KF DE F  ++KH +  +LSMANAG DTNGSQFFI TV T WL+G+H++FG+V E  D   VV KIEAVGS +GTPSKKV I  SG L  E
Sbjct:   39 KVTNKVFFDIEIGGEKAGRIVMGLYGKTVPKTAENFRALCTGEKGTGK-KGKPLHYKGSSFHRIIPQFMIQGGDFTDGNGRGGESIYGNKFKDENF--KLKHTEPYILSMANAGPDTNGSQFFITTVKTSWLDGRHVVFGRVLEGQD---VVDKIEAVGSGSGTPSKKVVIADSGELADE 212
[Close]
BLAST of mRNA_H-paniculata_contig4819.11911.1 vs. uniprot
Match: A0A7S1FIF5_NOCSC (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FIF5_NOCSC)

HSP 1 Score: 229 bits (583), Expect = 1.680e-65
Identity = 113/177 (63.84%), Postives = 137/177 (77.40%), Query Frame = 2 
Query: 2027 QVTETVYFDVEIGGERAGRIVMGLYGNAAPLTVKNFVHLCTGEDGIGKIYKKPLHYEGSSFHRIIPDFMIQGGDFTHGTGVGGESIYGGKFDDEMFWPEIKHDKKGVLSMANAGKDTNGSQFFICTVATPWLNGKHIIFGQVDETDDSLSVVSKIEAVGSRNGTPSKKVEIVGSGLL 2557
            +VT  V+FD+ + GE AGRIVMGLYG+  P TV+NF  LCTGE G+GK   KPLHY+GS FHR+IP+FM+QGGDFTHGTG GGESIYG KF+DE F  ++KH   G LSMANAGK+TNGSQFFI TV T WL+GKH++FG+V E    + +V K+EAVGS++G  SK VEI  SG L
Sbjct:   20 KVTHKVFFDITLDGEDAGRIVMGLYGDVVPKTVENFRALCTGEKGVGKS-GKPLHYKGSKFHRVIPNFMLQGGDFTHGTGTGGESIYGSKFNDENF--QLKHTAPGKLSMANAGKNTNGSQFFITTVTTSWLDGKHVVFGEVLE---GMDIVQKVEAVGSQSGKTSKLVEIKDSGEL 190
[Close]
BLAST of mRNA_H-paniculata_contig4819.11911.1 vs. uniprot
Match: L8H2P2_ACACA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H2P2_ACACA)

HSP 1 Score: 228 bits (580), Expect = 6.470e-65
Identity = 111/177 (62.71%), Postives = 137/177 (77.40%), Query Frame = 2 
Query: 2027 QVTETVYFDVEIGGERAGRIVMGLYGNAAPLTVKNFVHLCTGEDGIGKIYKKPLHYEGSSFHRIIPDFMIQGGDFTHGTGVGGESIYGGKFDDEMFWPEIKHDKKGVLSMANAGKDTNGSQFFICTVATPWLNGKHIIFGQVDETDDSLSVVSKIEAVGSRNGTPSKKVEIVGSGLL 2557
            ++T  VYFD+EI G+  GR+V GLYG   P TV+NF  LCTGE G+G    KPLHY+GSSFHR+IP+FMIQGGDFTHGTGVGGESIYG +F DE F  ++KH   G+LSMANAGKDTNGSQFFI TVATPWL+GKH++FG+V E  D   ++ K+E++GS++G PS  + I  SG L
Sbjct:   28 KITNKVYFDIEIDGKLEGRVVFGLYGGTVPKTVENFRALCTGEKGVGS-KGKPLHYKGSSFHRVIPNFMIQGGDFTHGTGVGGESIYGDRFADENF--KLKHTTPGLLSMANAGKDTNGSQFFITTVATPWLDGKHVVFGKVLEGYD---IIKKLESLGSQSGKPSATLTIADSGEL 198
[Close]
BLAST of mRNA_H-paniculata_contig4819.11911.1 vs. uniprot
Match: D8MA36_BLAHO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8MA36_BLAHO)

HSP 1 Score: 227 bits (579), Expect = 8.890e-65
Identity = 114/177 (64.41%), Postives = 136/177 (76.84%), Query Frame = 2 
Query: 2027 QVTETVYFDVEIGGERAGRIVMGLYGNAAPLTVKNFVHLCTGEDGIGKIYKKPLHYEGSSFHRIIPDFMIQGGDFTHGTGVGGESIYGGKFDDEMFWPEIKHDKKGVLSMANAGKDTNGSQFFICTVATPWLNGKHIIFGQVDETDDSLSVVSKIEAVGSRNGTPSKKVEIVGSGLL 2557
            ++T  VYFD+EI GE+ GRIVMGL+G   P TV+NF  LCTGE GIGK   KPLHY+GS FHRIIP+FMIQGGDFT G G GGESIYG KF DE F  ++KH   G+LSMANAG DTNGSQFFI TV T WL+G+H++FG+V E    + +V +IEAVG+ +GTP+KKV IV SG L
Sbjct:   32 KITNKVYFDIEIDGEKVGRIVMGLFGKTVPKTVENFRALCTGEKGIGKS-GKPLHYKGSIFHRIIPNFMIQGGDFTAGNGTGGESIYGEKFSDENF--KLKHTGPGILSMANAGPDTNGSQFFITTVKTQWLDGRHVVFGKVIE---GMEIVKQIEAVGTGSGTPTKKVVIVDSGEL 202
[Close]
BLAST of mRNA_H-paniculata_contig4819.11911.1 vs. uniprot
Match: UPI001F5D2617 (peptidyl-prolyl cis-trans isomerase CYP19-4-like isoform X1 n=4 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D2617)

HSP 1 Score: 227 bits (578), Expect = 2.130e-64
Identity = 113/177 (63.84%), Postives = 134/177 (75.71%), Query Frame = 2 
Query: 2027 QVTETVYFDVEIGGERAGRIVMGLYGNAAPLTVKNFVHLCTGEDGIGKIYKKPLHYEGSSFHRIIPDFMIQGGDFTHGTGVGGESIYGGKFDDEMFWPEIKHDKKGVLSMANAGKDTNGSQFFICTVATPWLNGKHIIFGQVDETDDSLSVVSKIEAVGSRNGTPSKKVEIVGSGLL 2557
            +VT  V+FD+EI G+ AGR+VMGL+GNA P T +NF  LCTGE GIGK   KPLHY+GSSFHRIIP FMIQGGDFTHG G+GGESIYG KF DE F  ++KH   G LSMANAGKDTNGSQFFI TV T WL+GKH++FG+V      + V+ K+EA G ++GTP  KV +  SG L
Sbjct:   47 KVTHKVFFDIEIDGKPAGRVVMGLFGNAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGTKFADENF--KLKHTGPGYLSMANAGKDTNGSQFFITTVTTSWLDGKHVVFGKVIS---GMDVIYKVEAEGKQSGTPKSKVVVADSGEL 217
[Close]
BLAST of mRNA_H-paniculata_contig4819.11911.1 vs. uniprot
Match: Q5YER7_BIGNA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Bigelowiella natans TaxID=227086 RepID=Q5YER7_BIGNA)

HSP 1 Score: 226 bits (576), Expect = 2.230e-64
Identity = 118/177 (66.67%), Postives = 134/177 (75.71%), Query Frame = 2 
Query: 2027 QVTETVYFDVEIGGERAGRIVMGLYGNAAPLTVKNFVHLCTGEDGIGKIYKKPLHYEGSSFHRIIPDFMIQGGDFTHGTGVGGESIYGGKFDDEMFWPEIKHDKKGVLSMANAGKDTNGSQFFICTVATPWLNGKHIIFGQVDETDDSLSVVSKIEAVGSRNGTPSKKVEIVGSGLL 2557
            +VT  V+FDVEIGGE+AGRIVMGLYG   P T +NF  LCTGE G GK   KPLHY+GSSFHRIIP FMIQGGDFT G G GGESIYG KF+DE F  +++H     LSMANAG +TNGSQFFI TV T WL+G+H++FG+V E  D   VV KIEA GS +GTPSKKV IV SG L
Sbjct:   25 KVTSKVFFDVEIGGEKAGRIVMGLYGKTVPKTAENFRALCTGEKGTGKS-GKPLHYKGSSFHRIIPQFMIQGGDFTQGNGRGGESIYGEKFEDENF--KLRHTSPYQLSMANAGPNTNGSQFFITTVKTSWLDGRHVVFGRVLEGTD---VVDKIEAAGSPSGTPSKKVTIVDSGEL 195
[Close]
BLAST of mRNA_H-paniculata_contig4819.11911.1 vs. uniprot
Match: A0A3M6VDF6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VDF6_9STRA)

HSP 1 Score: 226 bits (576), Expect = 2.630e-64
Identity = 116/181 (64.09%), Postives = 137/181 (75.69%), Query Frame = 2 
Query: 2015 ETTLQVTETVYFDVEIGGERAGRIVMGLYGNAAPLTVKNFVHLCTGEDGIGKIYKKPLHYEGSSFHRIIPDFMIQGGDFTHGTGVGGESIYGGKFDDEMFWPEIKHDKKGVLSMANAGKDTNGSQFFICTVATPWLNGKHIIFGQVDETDDSLSVVSKIEAVGSRNGTPSKKVEIVGSGLL 2557
            + T ++T  VYFDV I GE AGRIVMGLYG   P TV+NF  LCTGE G+G+   KPLH++ S FHRIIP+FM+QGGDFT   G+GGESIYG KFDDE F  ++KH  KG LSMANAG +TNGSQFFICTV T WL+G+H++FG+V E    + VV  IEAVGS +GTPSKKV IV SG L
Sbjct:   23 DATPKITNKVYFDVTIDGEPAGRIVMGLYGKTVPKTVENFRALCTGEKGLGES-GKPLHFKDSIFHRIIPNFMLQGGDFTQFNGMGGESIYGEKFDDENF--KLKHAGKGTLSMANAGSNTNGSQFFICTVKTSWLDGRHVVFGRVVE---GMDVVDAIEAVGSPSGTPSKKVVIVDSGEL 197
[Close]
BLAST of mRNA_H-paniculata_contig4819.11911.1 vs. uniprot
Match: I6Y9L2_LINUS (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Linum usitatissimum TaxID=4006 RepID=I6Y9L2_LINUS)

HSP 1 Score: 226 bits (575), Expect = 3.610e-64
Identity = 115/181 (63.54%), Postives = 134/181 (74.03%), Query Frame = 2 
Query: 2015 ETTLQVTETVYFDVEIGGERAGRIVMGLYGNAAPLTVKNFVHLCTGEDGIGKIYKKPLHYEGSSFHRIIPDFMIQGGDFTHGTGVGGESIYGGKFDDEMFWPEIKHDKKGVLSMANAGKDTNGSQFFICTVATPWLNGKHIIFGQVDETDDSLSVVSKIEAVGSRNGTPSKKVEIVGSGLL 2557
            E   ++T  VYFDVEI G+ AGRI MGLYG A P T +NF  LCTGE G+GK   KPLHY+GSSFHRIIP FM+QGGDFTHG G GGESIYG KF DE F  ++KH   G+LSMANAGKDTNGSQFFI TV T WL+G+H++FG+V      + VV K+EA G ++GTP  KV IV SG L
Sbjct:   30 EKLKEITHKVYFDVEIDGKPAGRITMGLYGKAVPKTAENFRALCTGEKGVGKS-GKPLHYKGSSFHRIIPSFMLQGGDFTHGDGRGGESIYGEKFADENF--KLKHTGPGLLSMANAGKDTNGSQFFITTVTTSWLDGRHVVFGKVLS---GMDVVYKVEAEGKQSGTPKSKVVIVDSGEL 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4819.11911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6P5_ECTSI1.450e-8172.73Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A835ZLK1_9STRA1.840e-7167.24Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7S2U584_9EUKA8.340e-6666.67Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lothar... [more]
A0A7S1FIF5_NOCSC1.680e-6563.84Peptidyl-prolyl cis-trans isomerase n=1 Tax=Noctil... [more]
L8H2P2_ACACA6.470e-6562.71Peptidyl-prolyl cis-trans isomerase n=1 Tax=Acanth... [more]
D8MA36_BLAHO8.890e-6564.41Peptidyl-prolyl cis-trans isomerase n=1 Tax=Blasto... [more]
UPI001F5D26172.130e-6463.84peptidyl-prolyl cis-trans isomerase CYP19-4-like i... [more]
Q5YER7_BIGNA2.230e-6466.67Peptidyl-prolyl cis-trans isomerase n=1 Tax=Bigelo... [more]
A0A3M6VDF6_9STRA2.630e-6464.09Peptidyl-prolyl cis-trans isomerase n=1 Tax=Perono... [more]
I6Y9L2_LINUS3.610e-6463.54Peptidyl-prolyl cis-trans isomerase n=1 Tax=Linum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4819contigH-paniculata_contig4819:698..5940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.0
Seed ortholog evalue2.9e-71
Seed eggNOG ortholog2880.D7G6P5
KEGG koko:K01802
Hectar predicted targeting categorysignal peptide
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
Ec32 ortholog descriptionCyclophilin-type peptidyl-prolyl cis-trans isomerase domain
Ec32 orthologEc-26_000140.1
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons6
Model size3270
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4819.11911.1prot_H-paniculata_contig4819.11911.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4819 1405..4016 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930427.4143107-UTR-H-paniculata_contig4819:697..14041622930427.4143107-UTR-H-paniculata_contig4819:697..1404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4819 698..1404 -
1691481287.3085527-UTR-H-paniculata_contig4819:697..14041691481287.3085527-UTR-H-paniculata_contig4819:697..1404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4819 698..1404 -
1622930427.5500126-UTR-H-paniculata_contig4819:4016..59401622930427.5500126-UTR-H-paniculata_contig4819:4016..5940Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4819 4017..5940 -
1691481287.38856-UTR-H-paniculata_contig4819:4016..59401691481287.38856-UTR-H-paniculata_contig4819:4016..5940Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4819 4017..5940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930427.4374259-CDS-H-paniculata_contig4819:1404..15181622930427.4374259-CDS-H-paniculata_contig4819:1404..1518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4819 1405..1518 -
1691481287.3196888-CDS-H-paniculata_contig4819:1404..15181691481287.3196888-CDS-H-paniculata_contig4819:1404..1518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4819 1405..1518 -
1622930427.4636495-CDS-H-paniculata_contig4819:2063..21951622930427.4636495-CDS-H-paniculata_contig4819:2063..2195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4819 2064..2195 -
1691481287.3279006-CDS-H-paniculata_contig4819:2063..21951691481287.3279006-CDS-H-paniculata_contig4819:2063..2195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4819 2064..2195 -
1622930427.4806082-CDS-H-paniculata_contig4819:2418..25081622930427.4806082-CDS-H-paniculata_contig4819:2418..2508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4819 2419..2508 -
1691481287.338393-CDS-H-paniculata_contig4819:2418..25081691481287.338393-CDS-H-paniculata_contig4819:2418..2508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4819 2419..2508 -
1622930427.4987135-CDS-H-paniculata_contig4819:2882..29731622930427.4987135-CDS-H-paniculata_contig4819:2882..2973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4819 2883..2973 -
1691481287.3567781-CDS-H-paniculata_contig4819:2882..29731691481287.3567781-CDS-H-paniculata_contig4819:2882..2973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4819 2883..2973 -
1622930427.5198374-CDS-H-paniculata_contig4819:3459..35871622930427.5198374-CDS-H-paniculata_contig4819:3459..3587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4819 3460..3587 -
1691481287.3690574-CDS-H-paniculata_contig4819:3459..35871691481287.3690574-CDS-H-paniculata_contig4819:3459..3587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4819 3460..3587 -
1622930427.534312-CDS-H-paniculata_contig4819:3932..40161622930427.534312-CDS-H-paniculata_contig4819:3932..4016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4819 3933..4016 -
1691481287.3785396-CDS-H-paniculata_contig4819:3932..40161691481287.3785396-CDS-H-paniculata_contig4819:3932..4016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4819 3933..4016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4819.11911.1

>prot_H-paniculata_contig4819.11911.1 ID=prot_H-paniculata_contig4819.11911.1|Name=mRNA_H-paniculata_contig4819.11911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
MMMKMMKMLLLAAVAVVGTNGSTENRMELLETTLQVTETVYFDVEIGGER
AGRIVMGLYGNAAPLTVKNFVHLCTGEDGIGKIYKKPLHYEGSSFHRIIP
DFMIQGGDFTHGTGVGGESIYGGKFDDEMFWPEIKHDKKGVLSMANAGKD
TNGSQFFICTVATPWLNGKHIIFGQVDETDDSLSVVSKIEAVGSRNGTPS
KKVEIVGSGLLR*
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mRNA from alignment at H-paniculata_contig4819:698..5940-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4819.11911.1 ID=mRNA_H-paniculata_contig4819.11911.1|Name=mRNA_H-paniculata_contig4819.11911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5243bp|location=Sequence derived from alignment at H-paniculata_contig4819:698..5940- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAAAAGTATTATTCAGTTCTCCCCGAGGAAAAATTACCAGCTCTTTCT
GTAAAGGAATGTTACTGGCATACGCAACAGTTTCACCGGTTGATGCACCC
CACAAGTACATTTTGATGTCTCATCGTGCTGATATTGCTTTGCAAATGTT
GTTTGGTGTAAGACTTCACGATTCAAGAACGCGATTTTTTGCAAAGCAGT
CACCAGACAGGACTGTAGACAGGACTGTGACTAACCACCTACTTACTTGC
CTGTGCGATAGTAGTGTGCTTCTGTAGGACACAAAGCAAAGTTCAATGTG
GGGGCACTAGGATTACCACGGATGTTCGTGTATAATGTATATGTAAGGGA
TACTTGACGAAGCGGTAGGCTAACAAGCTGAGTGCAGCATAGCTCGCTGA
GAGAATGACCATACTCGGGCACTTGCACGGAACTGGACTGTACTAGACCT
TTATGAATACAGCTTGAGTTTTAGAGTGGCTAGATGGACTGTGAAACTCG
TCTTGATGGGCAAGTAGTCTAGAGATGATAACCGTAATAGAAGACTGGTC
CACAGAGGACGGCAGGGAAGCTTGGAAATACATGGAATGCATCGATCGCT
CTACCCCCTCGAAGTGAGCCACAGTTGAACAAACGATGGAATACGGGATA
TTTTGGGCTGACAAGGCAGCAGTCTTGATTATCAAATATTTGGGGCTGAT
GGTATTGGCGATACTGGACAACAACCAGCATTTTAGGGTTGCGATACTGG
TGGTACTGGAACGATACTTGATAGCAACATGCTGGACATACTGGGTAGGG
CGACAGTAACCCCCCCCCTCCAAGCTGGAGTCCGCTGTAGCTTTTGCGTC
GTTACTCATGTCCTTGGTTGGAAATCACAGACGAAACTGTCAGTACTATA
ATCGGTACTATTGAGTATTGTAGGGTGACGATACTGGCGGAACTGAAAAA
TATGCATTATGTTGAGCAAGTGATACTGCCGTACTCAACAACTGATGGCA
CTGAAGGATACGGAGTAGTTTCTCTAATATATACTCCGGGTACATTGAGT
TTTTGGGTCTGACGGTACTGGTGGTACCCAATATTACCAGTACTTCCTGA
TGACATTCTCAACGCCTTACTCGGTATCTGGGGTTGAAATACTGCGTATA
TTGATGTGAAACAATTTATTTCCTGAAACTGAAGAATTATTATCATGACA
GTCCCGAAGCGATACTGAGTATTATACTGTATTGGGAATACTGCGGTTGA
ATTACCCGGGGTGTTCTACTGCGTTGTATCCTCAATGAGTATAATGTCAC
CTGGAGTAAGACAAGTTTCAAGTGTGCATCAATCAAGCGGGGTAATGGCG
TTTGGTCAAACACTGGCGAACCACACTAGACCCTGTCAATCTCTACATGA
GGAAAAACTTGACCTTGCGATGTAAGGAAGTCAGAAAAGAGCTAGTCTGT
TATTTGTCTCGGTAGCTCTGACCATCCTTCGGTTTGTTACGAAAAATTGA
GCTGCGGCATTACATAACAACGTGACCATATAAATGGGATAGGTGTATTA
CCCCGTATACAGAATACAGTGTACATCTGCACGGTTCATCTGTTGATGTT
CAAGTTCGTAGCGTTTGTGTGAAATAACTACTTGAATACTGGATTTTTTC
GCTAGCCGTCTGTGGTATGTAGAACCATCGATTGCGCAGGGATATTAAGT
ACTAGAATGTCTCGTATTCATGCCGGTATGCTTGAATCTTGACGGAGAGG
ATAAAAAGTCGCGCCCGAACTCGAAGTTTTCTCGTTTTGCGAGTAAACAG
AGAGCAGGTTTCGATTGCGACATCATCTTCGTCCTTGCCCGCACGATTCA
ACACTTGCTCCATTACCTCATGGTTTGGATAATCTTTAACTGGTGGGACA
GCAAACTAAACGCGAAGCCTGATAATGATGATGAAGATGATGAAGATGCT
GCTGCTGGCGGCGGTGGCTGTGGTTGGCACCAACGGCAGCACAGAAAACC
GCATGGAGGTGAGCTCATTTACGTGTCATCAGCTATTTTATTTCAGCAAG
CAGTGTGCCCTGTATAGACATGTTTGTTACGTGAAACTATCAACGAGGAG
ACTGGCCGAAAATTCCATCATGCACAAGTTGCGTGTATTTTCCAAGAATG
GGCCAAGAAAATGCCTTCAAATCCCTTGGTCTCAGGTCATATTTACTCAT
GAAGTGTTTACTTGTTCAGCATTGAACTTAGCGTAAACCAATACTGCTCC
AGACAACGCGGTCTGTAGATGCAGTAATATGTAATATGTATTTTTCATGA
ATCTCTGGAGAGTACGCAGTACAGTTAGTGAAGGTGTAATCCTGCACCCA
AAGCTTCTTGAAACAACTCTGCAGGTCACGGAGACGGTATACTTTGACGT
GGAAATTGGAGGTGAGCGTGCCGGACGGATCGTGATGGGACTCTACGGCA
ACGCTGCCCCGCTTACTGTGAAAAATTTCGTGTGAGTAGTACGTTGCTGA
CGCCACTGGCCTCTCTCGCTATTGTCCCATGTGTGATGAAGTATCCAGGG
AATTTATGCTTTTTTTTGTTGGAACAGTTCTCAAGCTTTCTCCATCCCGA
AATGGCCTCTTCGTAGTGCATCGCTCCACCTAGATTCCACTCTTAAGCCT
GAGCACGGCCTCCACTGCATCCTGTATATACCGTAGTAGTATTCATGTTT
TGGTGAACTGTGTACCTACTCAAGCTGGCATAACTTGATTCTAATGGATC
ATAGCATGGTCCTACCGTATTGTCATTCTTTCAATTCTGCACTCATGTGC
CCTCGACACGATTACCCAAGGCTAGTGTTGAAGGCAGTGTCAGAGTTTAT
TTTCCAAGATGTTCTGTGTAAAATCTAGAATATGTCGGTCGTCCATATCT
CGTTCGATATGCCGCTGGGTGATTAAACAACTCCATTTTCCCTTGATCCC
ACAACTTGTCGACCCAGACATCTGTGCACAGGCGAGGATGGTATCGGCAA
GATCTACAAAAAGCCCCTCCATTACGAGGGTTCCTCGTTCCACCGCATCA
TTCCTGACGTGAGTGTCTCTCTGTTTCATACAGTCGTGAAAAGCAACTGT
GTGTGTTGGTACTACCCCGTTTTACGTTACTACATACGTCGAACACGTAT
CCACGATTTTTAGCCAATGCAATATGTGTGAAGGAGAATGTCGGCGTGTC
AGCAAACTCAAGTGCTCCGCCTTGATGTACCTTACCGTGCCATACCTACC
GTTCCTGTGTTGAGTGGTGAAAATTAGGACAATTGGAACGGCAAGTACGT
ATAAATGGTCGGAATGGGTAGTTTTGTTTGTTGCATCATATTGAAACTGT
TCTTGGTTGCCTACTATCCTTGTGCACCAAACACTTTCACCATCTGCATT
CATTGTATTTCTGTTGGCGTATGATCCCACAGTTCATGATCCAGGGTGGT
GACTTCACACACGGCACCGGAGTTGGTGGAGAGTCCATCTATGGAGGGAA
GTTCGATGACGAGATGTTCTGGGTAAGTTCGAGTACACCAAACTAAATCT
GCAACATGTAGCTATCAAAATGGCCGTGGTGTTACTTGAGGAAATCCCCA
AACTCGGGACTGCTGTGTGGCGGTCAGAGAAGCTGAGTCACTTTTGTAAT
GCTTTCGCTCCATGTCAAAATTCGTTCGGGAGACTTTTTTCCACGTCAAC
TAAACGGTGGTCGATCGATGTTGGTCGATGCGTATCCTTGAGCAGCCTGA
GATAAAGCACGACAAGAAGGGAGTGCTTTCCATGGCCAACGCTGGAAAAG
ACACTAACGGGTCTCAGTTCTTCATTTGCACCGTAGCCACGCCGTGGCTG
AATGGCAAGCACATCATCTTCGGTCAGGTGAATATCTCGCTAGTTCCTGT
AGGTGTATTGATGTGTAGACGATGTGGTTTCTTCGAAATACGCGTTTTTT
AGAGCTACAGCATGCTGAAATGTCAAAACACGGACCCCATCATCTTCCCA
CCATGATGAATGAATGTCCTCTTGTCTGCAGTCTTTGAGGAATTGGTGAT
GGCTAGAGTGGGAAGGTTCAAGACCTACTCCCAAAGTGTTGCTGTATATA
TACCTGGCACTGCCCGGTCTTTGACAATATCCAGTATAAGAGTCGGTCTC
CCGTACCAGTTTGGAAAACATGAAAAATACCTGTTAATATCAAGTATGAC
TGGTTTCACTAATGGAAAACATCACGTCTCCCGGTAATACTAATTTCATT
CCCACATTACTAGTACATTTGTGACCATGGACTGTTTTGGTACCACCGTT
GCTAACCCTCGATCACGTGCCCATAATATCTAATGGTGGATCGTTAGCTG
ACAATCGCCCTTCCCTTCTTTATGCCATGTCTCGCTTTGTAATGAATCTT
TCCTTTTGCTTTTCTCGTCTAGGTGGACGAGACGGATGACAGCTTGAGCG
TTGTGAGCAAGATCGAGGCTGTTGGGAGCCGAAATGGCACCCCTAGCAAG
AAGGTCGAGATCGTAGGTTCTGGCCTCTTGCGCTAAGAACATGCTGCCAT
GTAATGCTAGATAACGACCCTTCAATGCCTCTGACATGTAGTAAGCTGTC
ATGATCGTAGTGTGAATCAATACTGAGAGTAAAGGCGTAAGAATTTCAAG
TGGTTCATGTCAACGGGGCGTTGGGGGCGGAGGCTGCGATGTAGCAAGAC
GCAGCAGGCGTGGGTACAGTAAGCGTGAACTAACCAAGTGGGTACACTTA
AAATATACCAACCAACGCGAGGTCAGATTGCAGCCTCTTTTAGATTGAAT
GGCATATTCTGTGTTCCTTTCGTTCATTTCCACGGCGACAACGATGCGTT
CTGACCAGAGACTGGTGGGCTACATCGAAACATACCACTCCTCGGGTCTA
GGGTACCTCATGTACAATAATTAGGGTCAGTTACTGGTACCACTATTTCT
AATCCTGGTTCGAGACTTTGGCCGGTAGTTCGAGATTACACGTACGTGAG
CTTAGAACGTCTCATAATGCAATCGAAACCCTAGATAAGACATTATCCTT
TGCTTTGAGCCTGTCAGAGAAGGTTAATGGGGGTATGGAGCGCACATGAA
GGGCACGAAATGCGATGAGAAAAACAGGGGCTGAAGAACAGTCATCGTTG
TCAGCTGTGATGAAAAAAAGTGAGGTGGAATCCCGTAGTGTCCCGCCTCG
TGCGGCGCCTCCGTTTCCCCCTCAACAACTGCGGCATGTGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4819:698..5940-

>mRNA_H-paniculata_contig4819.11911.1 ID=mRNA_H-paniculata_contig4819.11911.1|Name=mRNA_H-paniculata_contig4819.11911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig4819:698..5940- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGATGAAGATGATGAAGATGCTGCTGCTGGCGGCGGTGGCTGTGGT
TGGCACCAACGGCAGCACAGAAAACCGCATGGAGATGATGATGAAGATGA
TGAAGATGCTGCTGCTGGCGGCGGTGGCTGTGGTTGGCACCAACGGCAGC
ACAGAAAACCGCATGGAGCTTCTTGAAACAACTCTGCAGGTCACGGAGAC
GGTATACTTTGACGTGGAAATTGGAGGTGAGCGTGCCGGACGGATCGTGA
TGGGACTCTACGGCAACGCTGCCCCGCTTACTGTGAAAAATTTCGTCTTC
TTGAAACAACTCTGCAGGTCACGGAGACGGTATACTTTGACGTGGAAATT
GGAGGTGAGCGTGCCGGACGGATCGTGATGGGACTCTACGGCAACGCTGC
CCCGCTTACTGTGAAAAATTTCGTACATCTGTGCACAGGCGAGGATGGTA
TCGGCAAGATCTACAAAAAGCCCCTCCATTACGAGGGTTCCTCGTTCCAC
CGCATCATTCCTGACACATCTGTGCACAGGCGAGGATGGTATCGGCAAGA
TCTACAAAAAGCCCCTCCATTACGAGGGTTCCTCGTTCCACCGCATCATT
CCTGACTTCATGATCCAGGGTGGTGACTTCACACACGGCACCGGAGTTGG
TGGAGAGTCCATCTATGGAGGGAAGTTCGATGACGAGATGTTCTGGTTCA
TGATCCAGGGTGGTGACTTCACACACGGCACCGGAGTTGGTGGAGAGTCC
ATCTATGGAGGGAAGTTCGATGACGAGATGTTCTGGCCTGAGATAAAGCA
CGACAAGAAGGGAGTGCTTTCCATGGCCAACGCTGGAAAAGACACTAACG
GGTCTCAGTTCTTCATTTGCACCGTAGCCACGCCGTGGCTGAATGGCAAG
CACATCATCTTCGGTCAGCCTGAGATAAAGCACGACAAGAAGGGAGTGCT
TTCCATGGCCAACGCTGGAAAAGACACTAACGGGTCTCAGTTCTTCATTT
GCACCGTAGCCACGCCGTGGCTGAATGGCAAGCACATCATCTTCGGTCAG
GTGGACGAGACGGATGACAGCTTGAGCGTTGTGAGCAAGATCGAGGCTGT
TGGGAGCCGAAATGGCACCCCTAGCAAGAAGGTCGAGATCGTAGGTTCTG
GCCTCTTGCGCTAAGTGGACGAGACGGATGACAGCTTGAGCGTTGTGAGC
AAGATCGAGGCTGTTGGGAGCCGAAATGGCACCCCTAGCAAGAAGGTCGA
GATCGTAGGTTCTGGCCTCTTGCGCTAA
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