mRNA_H-paniculata_contig4815.11908.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 130 bits (326), Expect = 2.850e-32 Identity = 61/135 (45.19%), Postives = 83/135 (61.48%), Query Frame = 1
Query: 16 VAKENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
V E GLQ+KRLRSD E ++FC + GI+ + + YTPQQ GV+ER R+V E+ R + + + +WAEA +VY LNL PT G TP+E WHG TP ++HL+VFGC+ Y + +R KLD K
Sbjct: 510 VENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQK 644
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI) HSP 1 Score: 126 bits (316), Expect = 5.430e-31 Identity = 58/135 (42.96%), Postives = 86/135 (63.70%), Query Frame = 1
Query: 16 VAKENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
V K+ G +K LR+D GE Q+C ++GI +E +A YTP+Q GVAER R++ E+ RS + + + +WAEA AVY +NL+PT TPYE W G P ++HL++FGC+VYV+ + +R KL++K
Sbjct: 404 VEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLINANERHKLEEK 538
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A4Y1RLQ4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RLQ4_PRUDU) HSP 1 Score: 124 bits (310), Expect = 3.540e-30 Identity = 63/133 (47.37%), Postives = 79/133 (59.40%), Query Frame = 1
Query: 22 KENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
K++G +K LRSD+ GE F ENGIK +F+A YTPQQ GVAER R++ E+ RS + M R+WAEA AVY LN A + G TP E W G P + HLR+FG + Y + RRKLDDK
Sbjct: 47 KQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDK 179
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A5H2YBV8_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YBV8_PRUDU) HSP 1 Score: 124 bits (310), Expect = 3.970e-30 Identity = 63/133 (47.37%), Postives = 79/133 (59.40%), Query Frame = 1
Query: 22 KENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
K++G +K LRSD+ GE F ENGIK +F+A YTPQQ GVAER R++ E+ RS + M R+WAEA AVY LN A + G TP E W G P + HLR+FG + Y + RRKLDDK
Sbjct: 613 KQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDK 745
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A4Y1RY62_PRUDU (NAD(P)-binding Rossmann-fold superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RY62_PRUDU) HSP 1 Score: 124 bits (310), Expect = 3.990e-30 Identity = 63/133 (47.37%), Postives = 79/133 (59.40%), Query Frame = 1
Query: 22 KENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
K++G +K LRSD+ GE F ENGIK +F+A YTPQQ GVAER R++ E+ RS + M R+WAEA AVY LN A + G TP E W G P + HLR+FG + Y + RRKLDDK
Sbjct: 209 KQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDK 341
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A4Y1RM74_PRUDU (Transposable element protein n=7 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RM74_PRUDU) HSP 1 Score: 124 bits (310), Expect = 4.090e-30 Identity = 63/133 (47.37%), Postives = 79/133 (59.40%), Query Frame = 1
Query: 22 KENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
K++G +K LRSD+ GE F ENGIK +F+A YTPQQ GVAER R++ E+ RS + M R+WAEA AVY LN A + G TP E W G P + HLR+FG + Y + RRKLDDK
Sbjct: 613 KQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDK 745
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A6A3BE56_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BE56_HIBSY) HSP 1 Score: 123 bits (309), Expect = 5.620e-30 Identity = 65/135 (48.15%), Postives = 79/135 (58.52%), Query Frame = 1
Query: 16 VAKENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
V ENG+++KRLRSD GE R R FCA NGIK E + TPQQ GVAER R++ E RS I + + WAEA A Y +N P++P +G P E W L HLRVFGC+ YV S +R KLD K
Sbjct: 521 VENENGMKVKRLRSDNGGEYRNRRFRDFCANNGIKMETTVPMTPQQNGVAERMNRTLNERARSMRIHAGLPKFLWAEAINTAAYLINRGPSVPLDGKIPEEVWSKKEINLSHLRVFGCISYVHIDSAERSKLDAK 655
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: UPI000E703791 (uncharacterized protein LOC113290509 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E703791) HSP 1 Score: 123 bits (308), Expect = 6.700e-30 Identity = 59/135 (43.70%), Postives = 83/135 (61.48%), Query Frame = 1
Query: 16 VAKENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
V K+ G IK LRSD GE + FC ++GIK++F+A +TPQQ GVAER R++ + RS + T+ + + +W E + +VY LN +PT TP E W G P + HLRVFGC+ Y ++R+KLDDK
Sbjct: 407 VEKDAGCLIKTLRSDRGGEYKSNEFADFCKKDGIKRKFTAAFTPQQNGVAERKNRTILNMVRSVLYTSGVPKNFWPEVVQWSVYVLNRSPTQSVINMTPIEAWSGEKPCVSHLRVFGCIAYAHVPDEKRKKLDDK 541
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A6A2ZKQ4_HIBSY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZKQ4_HIBSY) HSP 1 Score: 123 bits (308), Expect = 7.500e-30 Identity = 64/135 (47.41%), Postives = 80/135 (59.26%), Query Frame = 1
Query: 16 VAKENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
V ENG+++KRLRSD GE R R+FCA NGIK E + TPQQ GVAER +++ E RS I + + WAEA A Y +N P++P +G P E W L HLRVFGC+ YV S +R KLD K
Sbjct: 419 VENENGMKVKRLRSDNGGEYRNRRFREFCANNGIKMETTVPMTPQQNGVAERMNKTLNERARSMRIHAGLPKFLWAEAINTAAYLINRGPSVPLDGRIPEEVWSKKEINLSHLRVFGCISYVHIDSAERSKLDAK 553
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A6A3A1U7_HIBSY (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A1U7_HIBSY) HSP 1 Score: 122 bits (305), Expect = 1.950e-29 Identity = 64/135 (47.41%), Postives = 78/135 (57.78%), Query Frame = 1
Query: 16 VAKENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
V ENG+++KRLRSD GE R R FCA NGIK E + TPQQ GVAER R++ E RS I + + W EA A Y +N P++P +G P E W L HLRVFGC+ YV S +R KLD K
Sbjct: 415 VENENGMKVKRLRSDNGGEYRNRRFRDFCANNGIKMETTVPMTPQQNGVAERMNRTLNERARSMRIHAGLPKFLWVEAINTAAYLINRGPSVPLDGRIPEEVWSRKEINLSHLRVFGCISYVHIDSAERSKLDAK 549 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4815.11908.1 >prot_H-paniculata_contig4815.11908.1 ID=prot_H-paniculata_contig4815.11908.1|Name=mRNA_H-paniculata_contig4815.11908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp QFERDVAKENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQback to top mRNA from alignment at H-paniculata_contig4815:2887..3306- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4815.11908.1 ID=mRNA_H-paniculata_contig4815.11908.1|Name=mRNA_H-paniculata_contig4815.11908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=420bp|location=Sequence derived from alignment at H-paniculata_contig4815:2887..3306- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4815:2887..3306- >mRNA_H-paniculata_contig4815.11908.1 ID=mRNA_H-paniculata_contig4815.11908.1|Name=mRNA_H-paniculata_contig4815.11908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig4815:2887..3306- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |