mRNA_H-paniculata_contig4815.11908.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4815.11908.1
Unique NamemRNA_H-paniculata_contig4815.11908.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 130 bits (326), Expect = 2.850e-32
Identity = 61/135 (45.19%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   16 VAKENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
            V  E GLQ+KRLRSD   E      ++FC + GI+ + +  YTPQQ GV+ER  R+V E+ R  +    + + +WAEA   +VY LNL PT    G TP+E WHG TP ++HL+VFGC+ Y +    +R KLD K
Sbjct:  510 VENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQK 644          
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI)

HSP 1 Score: 126 bits (316), Expect = 5.430e-31
Identity = 58/135 (42.96%), Postives = 86/135 (63.70%), Query Frame = 1
Query:   16 VAKENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
            V K+ G  +K LR+D  GE       Q+C ++GI +E +A YTP+Q GVAER  R++ E+ RS + +  +   +WAEA   AVY +NL+PT      TPYE W G  P ++HL++FGC+VYV+  + +R KL++K
Sbjct:  404 VEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLINANERHKLEEK 538          
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A4Y1RLQ4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RLQ4_PRUDU)

HSP 1 Score: 124 bits (310), Expect = 3.540e-30
Identity = 63/133 (47.37%), Postives = 79/133 (59.40%), Query Frame = 1
Query:   22 KENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
            K++G  +K LRSD+ GE        F  ENGIK +F+A YTPQQ GVAER  R++ E+ RS +    M  R+WAEA   AVY LN A +    G TP E W G  P + HLR+FG + Y     + RRKLDDK
Sbjct:   47 KQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDK 179          
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A5H2YBV8_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YBV8_PRUDU)

HSP 1 Score: 124 bits (310), Expect = 3.970e-30
Identity = 63/133 (47.37%), Postives = 79/133 (59.40%), Query Frame = 1
Query:   22 KENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
            K++G  +K LRSD+ GE        F  ENGIK +F+A YTPQQ GVAER  R++ E+ RS +    M  R+WAEA   AVY LN A +    G TP E W G  P + HLR+FG + Y     + RRKLDDK
Sbjct:  613 KQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDK 745          
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A4Y1RY62_PRUDU (NAD(P)-binding Rossmann-fold superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RY62_PRUDU)

HSP 1 Score: 124 bits (310), Expect = 3.990e-30
Identity = 63/133 (47.37%), Postives = 79/133 (59.40%), Query Frame = 1
Query:   22 KENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
            K++G  +K LRSD+ GE        F  ENGIK +F+A YTPQQ GVAER  R++ E+ RS +    M  R+WAEA   AVY LN A +    G TP E W G  P + HLR+FG + Y     + RRKLDDK
Sbjct:  209 KQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDK 341          
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A4Y1RM74_PRUDU (Transposable element protein n=7 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RM74_PRUDU)

HSP 1 Score: 124 bits (310), Expect = 4.090e-30
Identity = 63/133 (47.37%), Postives = 79/133 (59.40%), Query Frame = 1
Query:   22 KENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
            K++G  +K LRSD+ GE        F  ENGIK +F+A YTPQQ GVAER  R++ E+ RS +    M  R+WAEA   AVY LN A +    G TP E W G  P + HLR+FG + Y     + RRKLDDK
Sbjct:  613 KQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDK 745          
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A6A3BE56_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BE56_HIBSY)

HSP 1 Score: 123 bits (309), Expect = 5.620e-30
Identity = 65/135 (48.15%), Postives = 79/135 (58.52%), Query Frame = 1
Query:   16 VAKENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
            V  ENG+++KRLRSD  GE R    R FCA NGIK E +   TPQQ GVAER  R++ E  RS  I   + +  WAEA   A Y +N  P++P +G  P E W      L HLRVFGC+ YV   S +R KLD K
Sbjct:  521 VENENGMKVKRLRSDNGGEYRNRRFRDFCANNGIKMETTVPMTPQQNGVAERMNRTLNERARSMRIHAGLPKFLWAEAINTAAYLINRGPSVPLDGKIPEEVWSKKEINLSHLRVFGCISYVHIDSAERSKLDAK 655          
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: UPI000E703791 (uncharacterized protein LOC113290509 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E703791)

HSP 1 Score: 123 bits (308), Expect = 6.700e-30
Identity = 59/135 (43.70%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   16 VAKENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
            V K+ G  IK LRSD  GE +      FC ++GIK++F+A +TPQQ GVAER  R++  + RS + T+ + + +W E  + +VY LN +PT      TP E W G  P + HLRVFGC+ Y     ++R+KLDDK
Sbjct:  407 VEKDAGCLIKTLRSDRGGEYKSNEFADFCKKDGIKRKFTAAFTPQQNGVAERKNRTILNMVRSVLYTSGVPKNFWPEVVQWSVYVLNRSPTQSVINMTPIEAWSGEKPCVSHLRVFGCIAYAHVPDEKRKKLDDK 541          
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A6A2ZKQ4_HIBSY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZKQ4_HIBSY)

HSP 1 Score: 123 bits (308), Expect = 7.500e-30
Identity = 64/135 (47.41%), Postives = 80/135 (59.26%), Query Frame = 1
Query:   16 VAKENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
            V  ENG+++KRLRSD  GE R    R+FCA NGIK E +   TPQQ GVAER  +++ E  RS  I   + +  WAEA   A Y +N  P++P +G  P E W      L HLRVFGC+ YV   S +R KLD K
Sbjct:  419 VENENGMKVKRLRSDNGGEYRNRRFREFCANNGIKMETTVPMTPQQNGVAERMNKTLNERARSMRIHAGLPKFLWAEAINTAAYLINRGPSVPLDGRIPEEVWSKKEINLSHLRVFGCISYVHIDSAERSKLDAK 553          
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Match: A0A6A3A1U7_HIBSY (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A1U7_HIBSY)

HSP 1 Score: 122 bits (305), Expect = 1.950e-29
Identity = 64/135 (47.41%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   16 VAKENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQQYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHNGGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK 420
            V  ENG+++KRLRSD  GE R    R FCA NGIK E +   TPQQ GVAER  R++ E  RS  I   + +  W EA   A Y +N  P++P +G  P E W      L HLRVFGC+ YV   S +R KLD K
Sbjct:  415 VENENGMKVKRLRSDNGGEYRNRRFRDFCANNGIKMETTVPMTPQQNGVAERMNRTLNERARSMRIHAGLPKFLWVEAINTAAYLINRGPSVPLDGRIPEEVWSRKEINLSHLRVFGCISYVHIDSAERSKLDAK 549          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4815.11908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151T355_CAJCA2.850e-3245.19Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z7BCE9_9LAMI5.430e-3142.96Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1RLQ4_PRUDU3.540e-3047.37Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A5H2YBV8_PRUDU3.970e-3047.37Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1RY62_PRUDU3.990e-3047.37NAD(P)-binding Rossmann-fold superfamily protein n... [more]
A0A4Y1RM74_PRUDU4.090e-3047.37Transposable element protein n=7 Tax=Prunus dulcis... [more]
A0A6A3BE56_HIBSY5.620e-3048.15Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
UPI000E7037916.700e-3043.70uncharacterized protein LOC113290509 n=1 Tax=Papav... [more]
A0A6A2ZKQ4_HIBSY7.500e-3047.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3A1U7_HIBSY1.950e-2947.41Omega-6 fatty acid desaturase, endoplasmic reticul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4815contigH-paniculata_contig4815:2887..3306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score116.7
Seed ortholog evalue8.7e-24
Seed eggNOG ortholog15368.BRADI1G43550.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size420
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930427.05779-CDS-H-paniculata_contig4815:2886..33061622930427.05779-CDS-H-paniculata_contig4815:2886..3306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4815 2887..3306 -
1691481287.1317534-CDS-H-paniculata_contig4815:2886..33061691481287.1317534-CDS-H-paniculata_contig4815:2886..3306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4815 2887..3306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4815.11908.1prot_H-paniculata_contig4815.11908.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4815 2887..3306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4815.11908.1

>prot_H-paniculata_contig4815.11908.1 ID=prot_H-paniculata_contig4815.11908.1|Name=mRNA_H-paniculata_contig4815.11908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
QFERDVAKENGLQIKRLRSDEEGESRREAVRQFCAENGIKQEFSAVYTPQ
QYGVAERSWRSVFEVTRSKMITTNMGRRYWAEAARMAVYYLNLAPTLPHN
GGTPYEKWHGTTPKLDHLRVFGCMVYVMFQSQQRRKLDDK
back to top

mRNA from alignment at H-paniculata_contig4815:2887..3306-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4815.11908.1 ID=mRNA_H-paniculata_contig4815.11908.1|Name=mRNA_H-paniculata_contig4815.11908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=420bp|location=Sequence derived from alignment at H-paniculata_contig4815:2887..3306- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTCGAGCGGGACGTCGCGAAGGAAAATGGGCTACAAATAAAACGTCT TCGGTCAGATGAAGAAGGAGAGTCTAGAAGAGAAGCTGTCCGACAGTTTT GTGCGGAAAATGGCATCAAGCAAGAATTTTCTGCCGTCTACACGCCGCAG CAATACGGTGTGGCGGAGCGCAGCTGGCGTAGCGTTTTCGAGGTGACCCG AAGTAAGATGATTACCACCAACATGGGTCGCAGGTATTGGGCAGAGGCGG CACGCATGGCTGTGTACTACTTAAATCTCGCCCCGACGCTACCGCACAAC GGAGGGACGCCGTATGAGAAATGGCACGGCACGACACCAAAGCTTGACCA CCTTCGTGTCTTCGGCTGCATGGTGTACGTGATGTTCCAGTCTCAGCAGA GACGAAAACTCGATGACAAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4815:2887..3306-

>mRNA_H-paniculata_contig4815.11908.1 ID=mRNA_H-paniculata_contig4815.11908.1|Name=mRNA_H-paniculata_contig4815.11908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig4815:2887..3306- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTCGAGCGGGACGTCGCGAAGGAAAATGGGCTACAAATAAAACGTCT
TCGGTCAGATGAAGAAGGAGAGTCTAGAAGAGAAGCTGTCCGACAGTTTT
GTGCGGAAAATGGCATCAAGCAAGAATTTTCTGCCGTCTACACGCCGCAG
CAATACGGTGTGGCGGAGCGCAGCTGGCGTAGCGTTTTCGAGGTGACCCG
AAGTAAGATGATTACCACCAACATGGGTCGCAGGTATTGGGCAGAGGCGG
CACGCATGGCTGTGTACTACTTAAATCTCGCCCCGACGCTACCGCACAAC
GGAGGGACGCCGTATGAGAAATGGCACGGCACGACACCAAAGCTTGACCA
CCTTCGTGTCTTCGGCTGCATGGTGTACGTGATGTTCCAGTCTCAGCAGA
GACGAAAACTCGATGACAAACAGTTCGAGCGGGACGTCGCGAAGGAAAAT
GGGCTACAAATAAAACGTCTTCGGTCAGATGAAGAAGGAGAGTCTAGAAG
AGAAGCTGTCCGACAGTTTTGTGCGGAAAATGGCATCAAGCAAGAATTTT
CTGCCGTCTACACGCCGCAGCAATACGGTGTGGCGGAGCGCAGCTGGCGT
AGCGTTTTCGAGGTGACCCGAAGTAAGATGATTACCACCAACATGGGTCG
CAGGTATTGGGCAGAGGCGGCACGCATGGCTGTGTACTACTTAAATCTCG
CCCCGACGCTACCGCACAACGGAGGGACGCCGTATGAGAAATGGCACGGC
ACGACACCAAAGCTTGACCACCTTCGTGTCTTCGGCTGCATGGTGTACGT
GATGTTCCAGTCTCAGCAGAGACGAAAACTCGATGACAAA
back to top