mRNA_H-paniculata_contig4813.11904.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4813.11904.1
Unique NamemRNA_H-paniculata_contig4813.11904.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4813.11904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4813contigH-paniculata_contig4813:363..951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size589
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4813.11904.1prot_H-paniculata_contig4813.11904.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4813 433..768 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.548837-UTR-H-paniculata_contig4813:362..4321622930426.548837-UTR-H-paniculata_contig4813:362..432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4813 363..432 +
1691481286.872088-UTR-H-paniculata_contig4813:362..4321691481286.872088-UTR-H-paniculata_contig4813:362..432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4813 363..432 +
1622930426.584813-UTR-H-paniculata_contig4813:768..9511622930426.584813-UTR-H-paniculata_contig4813:768..951Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4813 769..951 +
1691481286.8898258-UTR-H-paniculata_contig4813:768..9511691481286.8898258-UTR-H-paniculata_contig4813:768..951Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4813 769..951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.5692186-CDS-H-paniculata_contig4813:432..7681622930426.5692186-CDS-H-paniculata_contig4813:432..768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4813 433..768 +
1691481286.8816-CDS-H-paniculata_contig4813:432..7681691481286.8816-CDS-H-paniculata_contig4813:432..768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4813 433..768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4813.11904.1

>prot_H-paniculata_contig4813.11904.1 ID=prot_H-paniculata_contig4813.11904.1|Name=mRNA_H-paniculata_contig4813.11904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MCSLLSFNNDGKVVVRPTTPTAHVGCSPITETGPIKLAPFPSPNFQQAHT
GCNFILSTLYFWEDVKSTNRSQEQKISIKPPALGAGGVGRKNNDCVFDFS
RLPCELSLLVS*
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mRNA from alignment at H-paniculata_contig4813:363..951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4813.11904.1 ID=mRNA_H-paniculata_contig4813.11904.1|Name=mRNA_H-paniculata_contig4813.11904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=589bp|location=Sequence derived from alignment at H-paniculata_contig4813:363..951+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGACACACATACATGCGAAATGTCAGACTCAATAGTCACTGCACCTAT
CCCGCAATTGCGTTACGCATATGTGCTCGTTGCTCTCTTTCAACAACGAC
GGCAAGGTAGTCGTGCGACCAACCACCCCAACTGCCCACGTAGGGTGCAG
TCCTATCACCGAGACTGGACCCATCAAGCTTGCACCATTTCCGTCTCCCA
ACTTCCAACAAGCACACACGGGTTGCAATTTCATTCTCTCCACTCTCTAC
TTTTGGGAGGATGTAAAAAGCACAAACCGCAGCCAAGAGCAAAAGATTTC
CATTAAACCTCCCGCACTTGGGGCAGGTGGCGTGGGCAGGAAAAATAATG
ATTGTGTATTTGATTTCTCGAGGTTGCCGTGCGAACTTTCGCTTTTGGTG
TCTTGATCTCGGGCTAAACCGTCCGCAATATGTACATTGTTTCCTTGTTT
TCTATTCATGTTTGCTTGCCTCGCACCCAAAGGCCTGTAAACACAGACGC
ATCGTTGACTCAGAAACCCAGAGCGGAGTTTCCGTCGCACTCCTGAAGCT
GCCTGAGGAATCCCAGGATAATTTCGAGGAAATCCATCT
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Coding sequence (CDS) from alignment at H-paniculata_contig4813:363..951+

>mRNA_H-paniculata_contig4813.11904.1 ID=mRNA_H-paniculata_contig4813.11904.1|Name=mRNA_H-paniculata_contig4813.11904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig4813:363..951+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTCGTTGCTCTCTTTCAACAACGACGGCAAGGTAGTCGTGCGACC
AACCACCCCAACTGCCCACGTAGGGTGCAGTCCTATCACCGAGACTGGAC
CCATCAAGCTTGCACCATTTCCGTCTCCCAACTTCCAACAAGCACACACG
GGTTGCAATTTCATTCTCTCCACTCTCTACTTTTGGGAGGATGTAAAAAG
CACAAACCGCAGCCAAGAGCAAAAGATTTCCATTAAACCTCCCGCACTTG
GGGCAGGTGGCGTGGGCAGGAAAAATAATGATTGTGTATTTGATTTCTCG
AGGTTGCCGTGCGAACTTTCGCTTTTGGTGTCTTGAATGTGCTCGTTGCT
CTCTTTCAACAACGACGGCAAGGTAGTCGTGCGACCAACCACCCCAACTG
CCCACGTAGGGTGCAGTCCTATCACCGAGACTGGACCCATCAAGCTTGCA
CCATTTCCGTCTCCCAACTTCCAACAAGCACACACGGGTTGCAATTTCAT
TCTCTCCACTCTCTACTTTTGGGAGGATGTAAAAAGCACAAACCGCAGCC
AAGAGCAAAAGATTTCCATTAAACCTCCCGCACTTGGGGCAGGTGGCGTG
GGCAGGAAAAATAATGATTGTGTATTTGATTTCTCGAGGTTGCCGTGCGA
ACTTTCGCTTTTGGTGTCTTGA
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