mRNA_H-paniculata_contig48128.11902.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48128.11902.1
Unique NamemRNA_H-paniculata_contig48128.11902.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig48128.11902.1 vs. uniprot
Match: D7G8T0_ECTSI (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.480e-23
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1
Query:   22 QGFDTTFTFRLSSPSLRCNVMDGVYTHCRSRGADGLAFVLQGEGSTALGSSGM 180
            QGFDTTFTFRLSSPSLRCN MDGVYTHCRSRGADGLAFV+QGEG TALG SG+
Sbjct:  605 QGFDTTFTFRLSSPSLRCNTMDGVYTHCRSRGADGLAFVIQGEGPTALGRSGV 657          
BLAST of mRNA_H-paniculata_contig48128.11902.1 vs. uniprot
Match: A0A7S2F3Q9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F3Q9_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.310e-14
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   22 QGFDTTFTFRLSSPSLRCNVMDGVYTHCRSRGADGLAFVLQGEGSTALGSSG 177
            +GFDTTF FR++  SLRCN MD  YTHCR+RG DGLAFV+QG+   ALG+ G
Sbjct:  114 EGFDTTFKFRIAEGSLRCNSMDDEYTHCRARGGDGLAFVIQGQSPRALGAGG 165          
BLAST of mRNA_H-paniculata_contig48128.11902.1 vs. uniprot
Match: A0A7S2RZZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZZ2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.370e-14
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1
Query:   10 LPLTQGFDTTFTFRLSSPSLRCNVMDGVYTHCRSRGADGLAFVLQGEGSTALGSSG 177
            L + +GFDT FTFR++  SLRCN+MD  YTHCR+RG DGLAFV+Q +   ALG+ G
Sbjct:  770 LNVREGFDTIFTFRVAEGSLRCNLMDDTYTHCRARGGDGLAFVIQAQSPLALGAGG 825          
BLAST of mRNA_H-paniculata_contig48128.11902.1 vs. uniprot
Match: A0A812RWS5_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RWS5_SYMMI)

HSP 1 Score: 73.9 bits (180), Expect = 5.980e-14
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1
Query:   22 QGFDTTFTFRLSSPSLRCNVMDGVYTHCRSRGADGLAFVLQGEGSTALGSSG 177
            +GFDTT TF++S+PS+RCN +D V T+CRSRGADGLAFVLQ     ALGS+G
Sbjct:  484 EGFDTTITFQISNPSMRCNRLDDVNTYCRSRGADGLAFVLQDATPVALGSAG 535          
BLAST of mRNA_H-paniculata_contig48128.11902.1 vs. uniprot
Match: A0A7S2B5Y5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B5Y5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.120e-13
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   22 QGFDTTFTFRLSSPSLRCNVMDGVYTHCRSRGADGLAFVLQGEGSTALGSSG 177
            +GF+TTFTFR++  SLRCN MD  YTHCR+RG DGLA VLQ +   ALG+ G
Sbjct:  569 EGFETTFTFRIAEGSLRCNQMDDAYTHCRARGGDGLALVLQNQSPRALGAGG 620          
BLAST of mRNA_H-paniculata_contig48128.11902.1 vs. uniprot
Match: T0R3T2_SAPDV (Fibronectin type-III domain-containing protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R3T2_SAPDV)

HSP 1 Score: 72.4 bits (176), Expect = 2.090e-13
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 PPPLPLTQGFDTTFTFRLSSPSLRCNVMDGVYTHCRSRGADGLAFVLQGEGSTALGSSG 177
            P P+ +++GF TTF  R+S+PS  C  MD V THCRSRG DGLAFVLQG  ++ +G  G
Sbjct:  469 PRPMTVSEGFSTTFALRISNPSFHCRFMDDVSTHCRSRGGDGLAFVLQGVNTSVVGRGG 527          
BLAST of mRNA_H-paniculata_contig48128.11902.1 vs. uniprot
Match: A0A7S2V3W6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3W6_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.390e-13
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    1 PPPLPLTQGFDTTFTFRLSSPSLRCNVMDGVYTHCRSRGADGLAFVLQGE 150
            P  L + +GF+TTF+FR+S+PSLRC  MD V+THC SRGADGLAFV+Q +
Sbjct:   94 PRQLNVREGFETTFSFRVSTPSLRCLWMDDVHTHCHSRGADGLAFVVQAQ 143          
BLAST of mRNA_H-paniculata_contig48128.11902.1 vs. uniprot
Match: W4H050_9STRA (Fibronectin type-III domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H050_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.920e-13
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   22 QGFDTTFTFRLSSPSLRCNVMDGVYTHCRSRGADGLAFVLQGEGSTALGSSG 177
            +GF T+F FRLS+PSL+C VMD V THCR+RG DG AFV+Q EG  ++G  G
Sbjct:  595 EGFATSFQFRLSNPSLQCKVMDDVSTHCRARGGDGFAFVIQNEGGASIGRGG 646          
BLAST of mRNA_H-paniculata_contig48128.11902.1 vs. uniprot
Match: A0A2R5GUV2_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUV2_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.360e-13
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1
Query:   22 QGFDTTFTFRLSSPSLRCNVMDGVYTHCRSRGADGLAFVLQGEGSTALGSSGM 180
            +GF T FT RLS+PSL C VMD   T CRSRGADGLAFV+Q E S+ALG  GM
Sbjct:  689 EGFVTEFTLRLSNPSLVCTVMDDEATQCRSRGADGLAFVIQNEASSALGHGGM 741          
BLAST of mRNA_H-paniculata_contig48128.11902.1 vs. uniprot
Match: A0A024U2S3_9STRA (Fibronectin type-III domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2S3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.300e-13
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 PPPLPLTQGFDTTFTFRLSSPSLRCNVMDGVYTHCRSRGADGLAFVLQGEGSTALGSSG 177
            P P  + +GF TTF FRLS+PS+ C  MD V THCR+RG DG AFV+Q +  TA+G  G
Sbjct:  580 PRPQNVREGFTTTFQFRLSNPSVHCKFMDDVSTHCRARGGDGFAFVIQNQDGTAIGRGG 638          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48128.11902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G8T0_ECTSI1.480e-2390.57F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
A0A7S2F3Q9_9STRA1.310e-1465.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RZZ2_9STRA2.370e-1460.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812RWS5_SYMMI5.980e-1467.31Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7S2B5Y5_9STRA1.120e-1363.46Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
T0R3T2_SAPDV2.090e-1355.93Fibronectin type-III domain-containing protein n=2... [more]
A0A7S2V3W6_9STRA2.390e-1364.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W4H050_9STRA3.920e-1361.54Fibronectin type-III domain-containing protein n=1... [more]
A0A2R5GUV2_9STRA5.360e-1367.92Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A024U2S3_9STRA7.300e-1355.93Fibronectin type-III domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48128contigH-paniculata_contig48128:102..281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue7.3e-20
Seed eggNOG ortholog2880.D7G8T0
Hectar predicted targeting categoryother localisation
EggNOG OGs28KFE@1,2QSWE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.4251578-CDS-H-paniculata_contig48128:101..2811622930426.4251578-CDS-H-paniculata_contig48128:101..281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48128 102..281 +
1691481286.8173602-CDS-H-paniculata_contig48128:101..2811691481286.8173602-CDS-H-paniculata_contig48128:101..281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48128 102..281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48128.11902.1prot_H-paniculata_contig48128.11902.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48128 102..281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48128.11902.1

>prot_H-paniculata_contig48128.11902.1 ID=prot_H-paniculata_contig48128.11902.1|Name=mRNA_H-paniculata_contig48128.11902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
PPPLPLTQGFDTTFTFRLSSPSLRCNVMDGVYTHCRSRGADGLAFVLQGE
GSTALGSSGM
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mRNA from alignment at H-paniculata_contig48128:102..281+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48128.11902.1 ID=mRNA_H-paniculata_contig48128.11902.1|Name=mRNA_H-paniculata_contig48128.11902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig48128:102..281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCCCCCCTACCGCTAACCCAGGGATTCGACACGACCTTCACGTTCCG ACTGAGCTCTCCGTCTCTACGCTGCAACGTCATGGACGGTGTTTACACCC ATTGCCGGTCTAGAGGGGCGGATGGTTTGGCGTTTGTGCTGCAGGGAGAG GGGTCGACGGCCCTAGGTAGCAGTGGAATG
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Coding sequence (CDS) from alignment at H-paniculata_contig48128:102..281+

>mRNA_H-paniculata_contig48128.11902.1 ID=mRNA_H-paniculata_contig48128.11902.1|Name=mRNA_H-paniculata_contig48128.11902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig48128:102..281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCCCCCCTACCGCTAACCCAGGGATTCGACACGACCTTCACGTTCCG
ACTGAGCTCTCCGTCTCTACGCTGCAACGTCATGGACGGTGTTTACACCC
ATTGCCGGTCTAGAGGGGCGGATGGTTTGGCGTTTGTGCTGCAGGGAGAG
GGGTCGACGGCCCTAGGTAGCAGTGGAATGCCCCCCCCCCTACCGCTAAC
CCAGGGATTCGACACGACCTTCACGTTCCGACTGAGCTCTCCGTCTCTAC
GCTGCAACGTCATGGACGGTGTTTACACCCATTGCCGGTCTAGAGGGGCG
GATGGTTTGGCGTTTGTGCTGCAGGGAGAGGGGTCGACGGCCCTAGGTAG
CAGTGGAATG
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