mRNA_H-paniculata_contig4812.11900.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4812.11900.1
Unique NamemRNA_H-paniculata_contig4812.11900.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4812.11900.1 vs. uniprot
Match: A0A7S2Y545_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y545_9STRA)

HSP 1 Score: 207 bits (527), Expect = 5.260e-60
Identity = 122/281 (43.42%), Postives = 169/281 (60.14%), Query Frame = 2 
Query:  137 IEEQFGEGKSLYEVLDISPTTDAANIKKAYYKAALKYHPDKCPGDEAANARFQALSMVHAILSDPERRSLYDETGEVTEDG-NAESAEDDDIWYDYWRALFPKVTEAAINSFDEKYKGSEEETRDVLEAYKRVKGKMSAVTDSIMLATDADEDRFRGLIEAAIERKDVPTFAAFRKKTAKKAAAKRKAKMDKEAAEAEELMAMIKARNKERSDAGSLSTHRSKQFDKMVSSLEGRYGGGGGCSARSSSNKRDAKSTKKAPSHSDIDDDEFDRVQKQLEERR 976
            I+  FG   SLY++L + PT  A+ IKKAY+KAALK HPDKCPGDEAA  RFQALS VHA+LS+P+ RS+YDETGE+ +D  N      DD W DYWR LFP+VT A I+SF +KY+GS+EE  DV+ AY    G + AV D++MLA+  DEDRF+ +I+ AI+  ++   A  RKKT K   A+                 + +   K   +  S+ +HR +QF  M+ SLE +Y      S    + K+  K+ +K     + ++DEF  +Q++L   R
Sbjct:    5 IQSMFGHELSLYDILGVPPTASASQIKKAYFKAALKCHPDKCPGDEAAKNRFQALSSVHAVLSNPDLRSIYDETGEIGDDSENMGGMNGDDGWSDYWRMLFPRVTTAGISSFQQKYQGSDEERADVIAAYNDFNGDIMAVIDNVMLASSDDEDRFQAIIDYAIDSGEI---AKKRKKTPKSQKARXXXXXXXXXXXXXXXEMLAEIMRKRHQENLSIVSHRRQQFTSMIDSLEEKYS-----SKEKKTKKKSGKNRQKHQEFEEPNEDEFKSIQERLMNNR 277
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BLAST of mRNA_H-paniculata_contig4812.11900.1 vs. uniprot
Match: A0A835ZGE5_9STRA (J domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGE5_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.960e-58
Identity = 125/261 (47.89%), Postives = 170/261 (65.13%), Query Frame = 2 
Query:  206 ANIKKAYYKAALKYHPDKCPGDEAANARFQALSMVHAILSDPERRSLYDETGEVTEDGNAESAEDDDIWYDYWRALFPKVTEAAINSFDEKYKGSEEETRDVLEAYKRVKGKMSAVTDSIMLATDADEDRFRGLIEAAIERKDVPTFAAFR----KKTAKKAAAKRKAKMDKEAAEAEELMAMIKARNKERSDAGSLS----THRSKQFDKMVSSLEGRYGGGGGCSARSSSNKRDAKSTKKAPSHSDIDDDEFDRVQKQL 964
            + IKKAY+K ALK HPDKCPGDE+A+ RFQAL MVH++LSDPERR+LYDETGEV +     +  + D+WY+Y+R LFPKVT + I+ F  +Y+GSEEE  D+++AY   KG M+ V D++ML+ + D  RF  +IE AI   DV ++AAF+    K T     AK  AK +KEA EAEEL A++K  N +R +AG       T  ++ FD M++SLEGRY  GG   A   +      +  + P   D+DD EF+R+Q +L
Sbjct:   10 SQIKKAYFKLALKCHPDKCPGDESAHTRFQALGMVHSVLSDPERRALYDETGEVADGEGEFNQANFDMWYEYYRNLFPKVTTSDIDKFKGEYQGSEEEKGDIIKAYVACKGDMAKVIDTVMLSGNDDAARFGTVIEEAIAAGDVKSYAAFKTSLSKLTRPGKKAKTSAKAEKEAKEAEELAALLKG-NADRRNAGGGGGGQLTRGAQHFDSMIASLEGRYASGG---AGKKAXXXXXXAAPEGPP--DMDDAEFERIQARL 264
[Close]
BLAST of mRNA_H-paniculata_contig4812.11900.1 vs. uniprot
Match: K3WTQ8_GLOUD (J domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTQ8_GLOUD)

HSP 1 Score: 192 bits (489), Expect = 3.840e-54
Identity = 115/253 (45.45%), Postives = 161/253 (63.64%), Query Frame = 2 
Query:  137 IEEQFGEGKSLYEVLDISPTTDAANIKKAYYKAALKYHPDKCPGDEAANA----RFQALSMVHAILSDPERRSLYDETGEVTEDGNAESAEDDDIWYDYWRALFPKVTEAAINSFDEKYKGSEEETRDVLEAYKRVKGKMSAVTDSIMLATDADEDRFRGLIEAAIERKDVPTFAAFR----------KKTAKKAAAKRK-AKMDKEAAEAEELMAMIKARNKERSDAGSLSTHRSKQ---FDKMVSSLEGRY 841
            I  QFG+G  LYEVL +  +     I +AY K ALKYHPDK  GDE + A    +FQALS +HA+L+D E R+ YDETG +  D   + +    +W DY+  +FPKV+EA I  F ++Y+ S+EE RDVL+AY ++KG M ++ D+IML+T+ DE+RF  +IE AI+ K+V +   +R          KK    A  KRK AK DKEA EAEELM  ++   +ER++ GS+ST  SK+   F+ +++SLE RY
Sbjct:    9 IYAQFGDGCDLYEVLGVDKSATEKEITRAYRKLALKYHPDKHRGDETSKAESTAKFQALSAIHALLNDAEARAYYDETGSIM-DSETDKSPSFQMWVDYFARIFPKVSEADITKFSDEYRFSDEEQRDVLDAYSKLKGHMQSILDTIMLSTEDDEERFAEMIEKAIKNKEVKSLPKWREYVRAKASKPKKQESAAQQKRKQAKKDKEAREAEELMRKVRGNQQERANGGSVSTLSSKRERGFESLLASLETRY 260
[Close]
BLAST of mRNA_H-paniculata_contig4812.11900.1 vs. uniprot
Match: A0A4D9D5G5_9STRA (J domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5G5_9STRA)

HSP 1 Score: 189 bits (481), Expect = 6.270e-53
Identity = 128/297 (43.10%), Postives = 169/297 (56.90%), Query Frame = 2 
Query:  137 IEEQFGEGKSLYEVLDISPTTDAANIKKAYYKAALKYHPDKCPGDEAANARFQALSMVHAILSDPERRSLYDETGEVTEDGNAESAEDDDIWYDYWRALFPKVTEAAINSFDEKYKGSEEETRDVLEAYKRVKGKMSAVTDSIMLATDADEDRFRGLIEAAIERKDVPTFAAFRKKTAKKAAAKRKAKMDKEAAEAEELMAMIKARNKERSDAGSLST---HRSKQFDKMVSSLEGRYG-----GGGGCS-ARSSSNKRDAKSTKKAPSHS---DIDDDEFDRVQ-----KQLEERR 976
            + + FGE K+LYE+L ++    +A I+KAY+K AL  HPDKCP D  A ARFQALS+VHA LSD  +R  YDETGE+  + +AE  + +  WY+YWRALFP VT   IN F E+Y+ SEEE RDVL AY+  +GKMS V D++MLATD DE RFR +IE AI  K V  F  F      KA  ++                      + R    +L+T    R +Q    + SLE +YG     GG GC  A     KRD ++ + A       DIDD +F+R++     K++EERR
Sbjct:   14 VAKAFGEKKTLYEILGVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDTNKRRNYDETGEIGSE-DAELNQSEQEWYEYWRALFPTVTVEKINRFQEEYRESEEEARDVLRAYEEAQGKMSLVIDNVMLATDGDEGRFRKMIEEAITNKRVKRFKCF------KADVRKDLXXXXXXXXXXXXXXXXXXXIQARRGPDALATMGRDRQQQMSSFLQSLEEKYGKGKKVGGSGCKEAGGKGRKRDREAREGARGSQRTEDIDDADFERLRDSLSKKKVEERR 303
[Close]
BLAST of mRNA_H-paniculata_contig4812.11900.1 vs. uniprot
Match: A0A6G0XWH9_9STRA (J domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWH9_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.180e-52
Identity = 117/282 (41.49%), Postives = 173/282 (61.35%), Query Frame = 2 
Query:  128 MNAIEEQFGEGKSLYEVLDISPTTDAANIKKAYYKAALKYHPDKCPGDEAANARFQALSMVHAILSDPERRSLYDETGEVTEDGNAESAEDDDIWYDYWRALFPKVTEAAINSFDEKYKGSEEETRDVLEAYKRVKGKMSAVTDSIMLATDADEDRFRGLIEAAIERKDVPTFAAFRKKTAKKAAAKRKAKMDKEAAEA---EELMAMIKARNKERSDAGSLSTHRSKQFDKMVSSLEGRYGGGGGCSARSSSNKRDAKSTKKAPSHSDIDDDEFDRVQKQL 964
            M+ ++E FG+   LY+VL +  T   + IK AY K ALKYHPDK P D+ A  +FQ L  +HA+LS+P+ RS YDETGE+  D   ES    D W +YWRALFP VTE  I SF+  Y+GSEEE +D+LEAY+R KGK  ++ D +ML+ D D +RF  +I+AAI+   VP F AF KK   K     K+K+ K AAEA   E+L+A I+ +      +G+    R+  F  ++++LE +Y           +++   KS++K+ ++S+  +++F   Q++L
Sbjct:    5 MDQVKEHFGQ-TDLYKVLGVKKTVTESEIKTAYRKQALKYHPDKNP-DKEATEKFQLLCSIHAVLSNPQTRSTYDETGEIDNDAMHESQSFHD-WLEYWRALFPPVTEKDIESFETTYRGSEEEAKDILEAYERYKGKWQSILDVVMLSRDEDVERFSEIIQAAIDDGKVPLFPAFSKKPVAK-----KSKVKKAAAEAKAAEDLIAQIRGKA-----SGNAMAKRASNFGSLLANLEAKY-----------ADEPPKKSSRKSKANSEPSEEDFLAAQRRL 262
[Close]
BLAST of mRNA_H-paniculata_contig4812.11900.1 vs. uniprot
Match: A0A1V9ZBC7_9STRA (J domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZBC7_9STRA)

HSP 1 Score: 186 bits (471), Expect = 7.620e-52
Identity = 115/288 (39.93%), Postives = 168/288 (58.33%), Query Frame = 2 
Query:  128 MNAIEEQFGEGKSLYEVLDISPTTDAANIKKAYYKAALKYHPDKCPGDEAANARFQALSMVHAILSDPERRSLYDETGEVTEDGNAESAEDDDIWYDYWRALFPKVTEAAINSFDEKYKGSEEETRDVLEAYKRVKGKMSAVTDSIMLATDADEDRFRGLIEAAIERKDVPTFAAFRKKTAKKAAAKRKAKMDKEAAEAEELMAMIKARNKERSDAGSLSTHRSKQFDKMVSSLEGRYGGGGGCSARSSSNKRDAKSTKKAPSHSDIDDDEFDRVQKQLEERRTKRVK 991
            M+A+   FG  + LY VL +  T   + +K AY K ALK+HPDK P D  A  +FQ L  +H+ LS+PE R++YDETGE+  +    ++  D  W DYWR LFPKVTE  I SF+  Y+GS+EE +DVL AY++ KGKM ++ D IML+TD D DRF  +I+ AI+  +VP + AF K+   KA+  R  K + EA  AEEL+A I      R +AG     R + F  ++S LE +Y           +++  +K TKK  +  +  +++F   Q ++  ++ K  K
Sbjct:    8 MDAVAAHFGT-RDLYAVLGVKDTATESELKTAYRKKALKFHPDKNPDDAEATTKFQLLCTIHSALSNPELRAVYDETGELETEATETASFRD--WLDYWRMLFPKVTEKDIQSFETSYRGSDEEAQDVLNAYQKYKGKMQSILDVIMLSTDNDIDRFAEIIQEAIDADEVPLYPAFNKRP--KASKARSKKAEAEAKAAEELIAKI------RGNAGGALAKRQQGFASILSGLESKY-----------ADEPKSKKTKKKAAFEEPSEEDFLAAQARVMSKKKKTTK 273
[Close]
BLAST of mRNA_H-paniculata_contig4812.11900.1 vs. uniprot
Match: W7TPA4_9STRA (Subfamily member 9 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPA4_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.610e-51
Identity = 96/174 (55.17%), Postives = 123/174 (70.69%), Query Frame = 2 
Query:  137 IEEQFGEGKSLYEVLDISPTTDAANIKKAYYKAALKYHPDKCPGDEAANARFQALSMVHAILSDPERRSLYDETGEVTEDGNAESAEDDDIWYDYWRALFPKVTEAAINSFDEKYKGSEEETRDVLEAYKRVKGKMSAVTDSIMLATDADEDRFRGLIEAAIERKDVPTFAAFR 658
            + + FG+ K+LYE+LD++    +A I+KAY+K AL  HPDKCP D  A ARFQALS+VHA LSD ++R  YDETGE+  + +AE  + +  WYDYWRALFP VT   I+ F E+Y+ SEEE RDVL+AY+  +GKMS V DS+MLATD DE RFR +IE AI  K V     F+
Sbjct:   14 VAKAFGKKKTLYEILDVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSE-DAELNQSEQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSLVIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCFK 186
[Close]
BLAST of mRNA_H-paniculata_contig4812.11900.1 vs. uniprot
Match: A0A024UH75_9STRA (J domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UH75_9STRA)

HSP 1 Score: 183 bits (465), Expect = 6.700e-51
Identity = 108/240 (45.00%), Postives = 151/240 (62.92%), Query Frame = 2 
Query:  128 MNAIEEQFGEGKSLYEVLDISPTTDAANIKKAYYKAALKYHPDKCPGDEAANARFQALSMVHAILSDPERRSLYDETGEVTEDGNAESAEDDDIWYDYWRALFPKVTEAAINSFDEKYKGSEEETRDVLEAYKRVKGKMSAVTDSIMLATDADEDRFRGLIEAAIERKDVPTFAAFRKK--TAKKAAAKRKAKMDKEAAEAEELMAMIKARNKERSDAGSLSTHRSKQFDKMVSSLEGRY 841
            ++ I   FG    LY +L +  T   + +K AY K ALK+HPDK   ++ A  +FQ L  +HA+LS+ + R++YDETGE+  D + ++   +D W  YWRALFP +TE  I SF+  Y+GS EE++D+LEAYK+ KGK   + D ++LA D D DRF  +I+AAI+   VP F AF+KK   AKK+A+ RK K D EA  AE+L+A I+ RN       S    RS QFD ++S LE +Y
Sbjct:    5 LDRIRAHFGH-TDLYRILHVKKTATESELKTAYRKQALKHHPDKNLDNDDATEKFQLLCTIHAVLSNADSRAVYDETGEIEADSSTDTKSFND-WVAYWRALFPPLTENDITSFEATYRGSAEESKDLLEAYKKHKGKWQNILDVVILARDEDIDRFEDIIQAAIDDGSVPLFPAFKKKPVVAKKSASARK-KQDAEAKAAEDLIAQIRGRN-----GRSAMAKRSAQFDSLLSKLEDKY 236
[Close]
BLAST of mRNA_H-paniculata_contig4812.11900.1 vs. uniprot
Match: A0A1W0A4M0_9STRA (J domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4M0_9STRA)

HSP 1 Score: 183 bits (464), Expect = 6.840e-51
Identity = 104/238 (43.70%), Postives = 154/238 (64.71%), Query Frame = 2 
Query:  128 MNAIEEQFGEGKSLYEVLDISPTTDAANIKKAYYKAALKYHPDKCPGDEAANARFQALSMVHAILSDPERRSLYDETGEVTEDGNAESAEDDDIWYDYWRALFPKVTEAAINSFDEKYKGSEEETRDVLEAYKRVKGKMSAVTDSIMLATDADEDRFRGLIEAAIERKDVPTFAAFRKKTAKKAAAKRKAKMDKEAAEAEELMAMIKARNKERSDAGSLSTHRSKQFDKMVSSLEGRY 841
            M  IE+ FGE + LY +L +  T  A+ +K AY K ALK+HPDK P D  A  +FQ L  +H+ LS+P+ R++YDETGE+  +    ++  D  W +YWRALFPKVT   I +F+  Y+ SEEE +DVL+AY++ KGKM ++ D IML+T+ D +RF  +I+ AI+ ++VP + AF+KK   K   +   K + EA  AEELMA I+ +    +D G+L+  R + F  ++S+LE +Y
Sbjct:    5 MEKIEQHFGE-RDLYAILGVKKTCTASELKTAYRKTALKFHPDKNPDDPEATTKFQLLCTIHSSLSNPDLRAVYDETGELEVEATETASFKD--WLEYWRALFPKVTVKDIENFETSYRDSEEEAQDVLKAYEKYKGKMQSILDVIMLSTENDIERFSDIIQRAIDAEEVPMYPAFKKKPKAK---RNNKKAEAEAKAAEELMAKIRGK----ADGGALAK-RQQGFASLLSNLEAKY 231
[Close]
BLAST of mRNA_H-paniculata_contig4812.11900.1 vs. uniprot
Match: T0R0U8_SAPDV (J domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R0U8_SAPDV)

HSP 1 Score: 181 bits (460), Expect = 2.970e-50
Identity = 98/207 (47.34%), Postives = 136/207 (65.70%), Query Frame = 2 
Query:  128 MNAIEEQFGEGKSLYEVLDISPTTDAANIKKAYYKAALKYHPDKCPGDEAANARFQALSMVHAILSDPERRSLYDETGEVTEDGNAESAEDDDIWYDYWRALFPKVTEAAINSFDEKYKGSEEETRDVLEAYKRVKGKMSAVTDSIMLATDADEDRFRGLIEAAIERKDVPTFAAFRKKTAKKAAAKRKAKMDKEAAEAEELMAMIK 748
            M+A+E  FG+ + LY +L +  +   A +K AY K ALKYHPDK P D+ A  +FQ L  +HA LS PE R++YDETGE+  +    S+  D  W DYWR LFPKVT   I SF+++Y+GS+EE RDVL AY++ KGK +++ D +ML++D D DRF  +I+ AI+  +VP + AF KKT K  +  +K     EA  AEEL+A I+
Sbjct:    6 MDAVEASFGQ-RDLYAILGVEASATTAQLKTAYRKKALKYHPDKNPDDDEATTKFQLLCTIHAALSSPELRAVYDETGELETEATETSSFRD--WVDYWRNLFPKVTTKDIQSFEQEYRGSDEEARDVLNAYEKYKGKWTSIMDVVMLSSDDDMDRFSKIIQEAIDANEVPLYPAFTKKTIKTRSKSKKVAA--EAKAAEELLAKIR 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4812.11900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2Y545_9STRA5.260e-6043.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZGE5_9STRA2.960e-5847.89J domain-containing protein n=1 Tax=Tribonema minu... [more]
K3WTQ8_GLOUD3.840e-5445.45J domain-containing protein n=1 Tax=Globisporangiu... [more]
A0A4D9D5G5_9STRA6.270e-5343.10J domain-containing protein n=1 Tax=Nannochloropsi... [more]
A0A6G0XWH9_9STRA1.180e-5241.49J domain-containing protein n=1 Tax=Aphanomyces eu... [more]
A0A1V9ZBC7_9STRA7.620e-5239.93J domain-containing protein n=1 Tax=Achlya hypogyn... [more]
W7TPA4_9STRA1.610e-5155.17Subfamily member 9 n=1 Tax=Nannochloropsis gaditan... [more]
A0A024UH75_9STRA6.700e-5145.00J domain-containing protein n=1 Tax=Aphanomyces in... [more]
A0A1W0A4M0_9STRA6.840e-5143.70J domain-containing protein n=1 Tax=Thraustotheca ... [more]
T0R0U8_SAPDV2.970e-5047.34J domain-containing protein n=1 Tax=Saprolegnia di... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4812contigH-paniculata_contig4812:2532..9199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.0
Seed ortholog evalue2e-46
Seed eggNOG ortholog65071.PYU1_T008354
KEGG koko:K09529
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Source PGD
EggNOG OGs1MDYE@121069,COG2214@1,KOG0719@2759
Ec32 ortholog descriptionDnaJ domain
Ec32 orthologEc-24_000680.2
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons7
Model size1431
Cds size870
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.2057703-UTR-H-paniculata_contig4812:2531..29651622930426.2057703-UTR-H-paniculata_contig4812:2531..2965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4812 2532..2965 -
1691481286.6918883-UTR-H-paniculata_contig4812:2531..29651691481286.6918883-UTR-H-paniculata_contig4812:2531..2965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4812 2532..2965 -
1622930426.3213923-UTR-H-paniculata_contig4812:9072..91991622930426.3213923-UTR-H-paniculata_contig4812:9072..9199Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4812 9073..9199 -
1691481286.7863233-UTR-H-paniculata_contig4812:9072..91991691481286.7863233-UTR-H-paniculata_contig4812:9072..9199Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4812 9073..9199 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.2213116-CDS-H-paniculata_contig4812:2965..31451622930426.2213116-CDS-H-paniculata_contig4812:2965..3145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4812 2966..3145 -
1691481286.7050984-CDS-H-paniculata_contig4812:2965..31451691481286.7050984-CDS-H-paniculata_contig4812:2965..3145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4812 2966..3145 -
1622930426.2353692-CDS-H-paniculata_contig4812:4294..44021622930426.2353692-CDS-H-paniculata_contig4812:4294..4402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4812 4295..4402 -
1691481286.717092-CDS-H-paniculata_contig4812:4294..44021691481286.717092-CDS-H-paniculata_contig4812:4294..4402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4812 4295..4402 -
1622930426.2494128-CDS-H-paniculata_contig4812:4509..46371622930426.2494128-CDS-H-paniculata_contig4812:4509..4637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4812 4510..4637 -
1691481286.7281559-CDS-H-paniculata_contig4812:4509..46371691481286.7281559-CDS-H-paniculata_contig4812:4509..4637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4812 4510..4637 -
1622930426.2651372-CDS-H-paniculata_contig4812:5335..54321622930426.2651372-CDS-H-paniculata_contig4812:5335..5432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4812 5336..5432 -
1691481286.7373073-CDS-H-paniculata_contig4812:5335..54321691481286.7373073-CDS-H-paniculata_contig4812:5335..5432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4812 5336..5432 -
1622930426.2780921-CDS-H-paniculata_contig4812:5922..59951622930426.2780921-CDS-H-paniculata_contig4812:5922..5995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4812 5923..5995 -
1691481286.7495751-CDS-H-paniculata_contig4812:5922..59951691481286.7495751-CDS-H-paniculata_contig4812:5922..5995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4812 5923..5995 -
1622930426.2898946-CDS-H-paniculata_contig4812:8622..87861622930426.2898946-CDS-H-paniculata_contig4812:8622..8786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4812 8623..8786 -
1691481286.7603528-CDS-H-paniculata_contig4812:8622..87861691481286.7603528-CDS-H-paniculata_contig4812:8622..8786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4812 8623..8786 -
1622930426.3035338-CDS-H-paniculata_contig4812:8952..90721622930426.3035338-CDS-H-paniculata_contig4812:8952..9072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4812 8953..9072 -
1691481286.7726362-CDS-H-paniculata_contig4812:8952..90721691481286.7726362-CDS-H-paniculata_contig4812:8952..9072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4812 8953..9072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4812.11900.1prot_H-paniculata_contig4812.11900.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4812 2966..9072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4812.11900.1

>prot_H-paniculata_contig4812.11900.1 ID=prot_H-paniculata_contig4812.11900.1|Name=mRNA_H-paniculata_contig4812.11900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=290bp
MNAIEEQFGEGKSLYEVLDISPTTDAANIKKAYYKAALKYHPDKCPGDEA
ANARFQALSMVHAILSDPERRSLYDETGEVTEDGNAESAEDDDIWYDYWR
ALFPKVTEAAINSFDEKYKGSEEETRDVLEAYKRVKGKMSAVTDSIMLAT
DADEDRFRGLIEAAIERKDVPTFAAFRKKTAKKAAAKRKAKMDKEAAEAE
ELMAMIKARNKERSDAGSLSTHRSKQFDKMVSSLEGRYGGGGGCSARSSS
NKRDAKSTKKAPSHSDIDDDEFDRVQKQLEERRTKRVKR*
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mRNA from alignment at H-paniculata_contig4812:2532..9199-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4812.11900.1 ID=mRNA_H-paniculata_contig4812.11900.1|Name=mRNA_H-paniculata_contig4812.11900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6668bp|location=Sequence derived from alignment at H-paniculata_contig4812:2532..9199- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGACATAAGCACCGAGGACTCTGTTGAACTGTTGTCTTTTCGCTGTG
TGCTGTCTGTCCGCACCTACATCCTCGCGATTTCCTGCATACAAGCCTTA
TCTGACCCATGCGTACGTATTTGTGATATGAACGCAATCGAGGAACAGTT
TGGCGAGGGAAAATCTTTGTACGAAGTACTCGACATATCACCTACTACCG
ACGCTGCCAACATAAAGAAGGCATACTACAAGGCCGCGCTCAAATATGTG
AGTTCTTCTTTCCATACAGGATATACATTGCATAGAGCTAGCTAGAAGTG
CAGCCAGCAATGGGATAAGGTTATGCCTTCACAGAACAACGTTAATTGTG
AAAATACAGCTATACCTACTAATTTGCCATTCCTTCATTGCTCCCGCTTG
GGTTTCGTCCCAGCACCCAGACAAATGTCCAGGAGATGAAGCAGCGAACG
CTCGTTTCCAGGCACTTTCGATGGTGCACGCCATCTTGTCTGATCCCGAA
AGGCGGAGCCTTTATGACGAAACTGGAGAGGTGACCGAAGATGGTAACGC
CGAAAGTGCGGAAGATGACGATATATGGTAAGTGAGGACGGAAACGAAAT
GAGGTGTGGTCTCTATCTCTACTGGTGCAGTGGTAGTATAATGTAGTAGG
AATTGCAGTACTGTAGCTGGCGCCCTGAGCAGATTCCAAAGTATATGCAA
CTAATTTGAATTCGGAGGAGGTCCGACTCAAACATGTTGGCCATTTTGGC
GCCGAATTTTTATGTGATGCCAGCGTTGAAAAGAGGATCCTTCTATTCAC
CTTGGTGCTTGTTTCACCATTGCGCGTCTCTTTACAGTACCTGCCTGGAG
TCAATCTGCTGTTGTATCGGGTGCTCCACTGCCACCTACCTATTCCCTGA
TCAGTCCGGCCCTGTTGGACTTCGGTCGAATATTGATGATTTTGAAAGTT
AGTTGTGTGATGGAAAAAACAGACAGTTCAGTTCGTCTACTGCAGCACAA
TTTCTGTCCGTTATATTCCAATTGCAGCAGCAAAAACCGCGAAAAAAGAT
CGAGCGACGTTGGCAAGTATCAGCATCACCCGATAGAGCTGTAGTGGTAT
CCGTTGCATCTTCATGTCTGCGTGCTTTGGTGCATGATGGTATCGAGACA
CAGAGTAGCCTGTCTGAAGTCGTTGTAGGTGAATTATGATGATACAAGCA
TTGTTGATTTTGACACATATCGTTTACGATCCCTTAGGGGTGACGAGGCC
AATCACAGGATGTCAGACCTACCAAAGGTGACAACATCAGGAGTCAGTCC
TTGTTCTCCCCGCCGTCGTTGTTGTACAGTATTTCATTTATACCGAGCCA
TTTTGAGGCAATGTGTTCGTTTTGGTGTGTTTAGCCTGTTGGTAAGACTT
GGTCTCCTTTTCTTGGATATCCCTTGAGATATTTGAAATAGAAATCGAAA
TGAAAAAAGAAGGCGGTGATTGAGTGGTTTTGCTTCAGATGTGAAAACTA
AATTCTAAAACTGCTAGTTTATGTTCCGATACTCTGGGAAACGCCATCAT
ATCGTAATAAAAAGGCGAGGTTTTCATCGTAAGCGGCGTGAGGAGCAAAT
CAAATCCAGTTGTACCATATGGAAAGCGGATCATTCCAACAAGTCTCCGT
CGAGGATAAATCTTGACGGCAAGATACGCTGTCCCGTTTCTGTTCTACAA
GGTCATGGGTTCAAATCTTCGACCACCCACCGTCCACAATGCTGAGCGGA
TAAAAGAAGTATCGAAAGACGTCAAAAATGATGAGGGATGTGTCAAGACC
GAACTGCTCAAACCCTCTGATCCTGTGAATTCTCACAACACGCACGGAGG
AACCGACTAATCTTACAAGGCGCTTGCAAAAACACGAGAGAGATTGGAGG
ACACCCTATTGAAAGGGACAATTCCCACAAGTCTCCGTCGAGGGCAGGCC
CAAATTTTGTAATTTTCTTATTATGGGGTTAGTTTTTGTGTGTGCTCCAT
CTCAATCGCTTTTTGCAGCACCTACAGGCACTCCCGATAGACCATAAGCA
CTTTAACACGAGCTAGGTTGGGTGATCGGATTGTATTGACAAGCGACAAC
AAATGGCGTGAAATTGTCAAAGCTTGTGGTCATGCTCCTGTCCAAACTGT
GCATGTTGGCTCTGGCGCCGTTTGGACTGTGTCGTAGTTGAAAACAATTA
CTCCAGTGTTACTCAAGTGCTTGAACTACTCAAGCCAAGTCAAGTGTACG
GCATGTGGTTAACTTCAGAGGAGCCATTCGCCCTGTCAAGTACTGTGTCG
GGGCAATGTAGCCCTCATATTCAATGTTTAAACTGTTGGGAGGTGGCGTG
TATTTTCCTCCTGTTGGTATTTCTCGGCTTCCACAAATATTGCGCTTTCG
CTCCGACCAGCGCACCTAAAACATAATGTCGAAGTCAAATTCGTCATATT
CGATTTCGAGTTTCAATTTTGTTAAAAGACAAGAAATATGTCATAATGAT
CGATTTCTCAGCAGCAAACAAGGGGTTCCTTATTAGCGGGTGGGTGTTGT
ATTTACTGACTATTGATTTTTCCCTCATCTAGAGCTCAGCCAGCGTATGT
ACTCGTATTCACGCGGGTGGAGTTTTAAGCACCTAATCGATACTGTGTCA
AGGATAGTGTACGTCGCCGTTTCGCTCGATGACATACTCTTGCTCTACGC
TTGTAGGGTTTAGAGCTCTAGCGCTACGGGGCTATGGTTACCTCAAATAC
AATTCTACGCGGTAGAAGCTTTTTTGTTTTTTTAATCCCCCGGAAGGCTA
AGGCAAAATCTCTATCCGATGCTTCATACCGACGTACGTCTACATTTCCT
TTTACAGAACAGAGTTATTTGTTCCTCTGCGGGGTAGGCACCACCCCGAT
TCGACTGAACCAGGTAGGCAGTGTGGGGGTTGCACCCACTAAAAGACCTC
TGACCAGATTTCCAGTAATGCTCAGTTCACGAGCTACCCTACCCGTTCGG
GCGTAGGTTCGTGGCGCAGTAGAAGGGTTTGGGTGTTCATGACTTAGGTC
ATTGTTGTCGTCTACAACAACGCCTCACATTTATGAACAAACTCACATAG
CATATTGAAGTCATCGGCGATCGACTCCGTCAAGCTATATTAATTCCTTT
GCTTGGGTTGTCACCGCCTTGCACTTCCGCTCGTGGCTCTCTCCAAACCG
GCAGGTACGACTACTGGCGTGCTCTCTTTCCCAAAGTCACTGAGGCCGCT
ATCAACTCGTTCGATGAAAAATACAAGGTAAAATATTATATACCTCATGC
CTTATTTGTTTACGAGTACAGCTGCGATACGAACTTATTTTATGCGACGT
ACACGACACGCTAGTAGTAAGGCATGGCGCCGTTGGATGGGTGCAATTGA
TTAGAGATTAAGGCAATTTCAAGTTGCAGTGTTCACAATACAGCGACCAC
GATTAACACCCCCTTTATCATTCTCCATGCGTTCAGAAAATGCTCAATAG
CTTATGTCGCAGAATGGAATTAACAACTGTGTTTTCGTCGAACTGTAATT
CGTGAAGTAAAATCATCCACCCGCTCGCCGAGAATCATACTCTGTGCCAA
AGCTGGCGTTGTCATTCATGCATATTTCTTGCAGTGGCTGGTAAGCACTG
ACGTGCATCGAGAGAAATCGCATCATTATTTTCTCATGGTGGCCTTAAGC
AGCTCGGCTACAATCTCAATACTGCCAACCACATACGCTGATTGATACGG
GCTACATTGTATTTCAGGGCTCGGAAGAGGAGACTCGAGATGTGCTTGAG
GCGTATAAGAGGGTGAAGGGCAAGATGTCTGCGGTAACCGACTCTATCAT
GCTCGCAACTGACGGTAAGTTTTCCAGTGTTCTCAGATTATGATATTGTG
GCTGGAGGGTGATCCCGAAAATAGCATAATCTTCGGCAAGCAGATAATTT
GGCTCAATAGAAAAGAGGGCACGCGCATCAATTCCAAGGACCATTGTGCT
GGAATGCACCTTGAACCTGGTATGTTCGCGCAAGAGTGGGGCTTCTTCTA
CGACAATGAATCCATCAGCAAGTACAGCTGTTTCGATCTCTATGCACAGC
ATTGGTACATTGTGTTTGGTGGGGCATTGCATTGTATTGTTATCGGCTGA
TAGTGCTGGTGCTCCCAGGATGTCTAGGTGAAGTCAGTTTAGGATTGAAG
TAGAACCGGAAAACAAGCGCTGTGTTGCCCACAGGCGAAGACTGTAAACT
ACGTGCCGTCTTAGCAAACATTTTGGTAGAATACCTAATGTATCCAAGGG
TGGCTATGCTATTCGCTCACTGTTGTTTTAGTTACAGTATAAACTCATGG
TGGATTCGCTCATGACCGTTAATTCTTCCAGTTGTGTGCATTCCCAGTGT
TGTTGATTGCATTCTGACGGCTGGTGTACAGGGTGACATGGGCTTGCGGT
ACAAGGTGTGACAACATGAGCGACTGGAGTATAATGATACGATACGAATA
TAAACAATTTGTGCCCTCTTGACGTCCTTACTTTTCTGCTGTCACTCAAT
GATTCACCGCAGCGGATGAAGATCGGTTTCGAGGGCTCATTGAGGCGGCC
ATCGAGCGAAAGGACGTGCCAACGTTTGCTGCCTTTCGGAAAAAAACTGC
GAAAAAAGCAGCGGCCAAGCGCAAGGCAAAGATGGACAAGGTGCGGATCC
CTCACCACAGAGAAGTGTGCGTCGATACTCCGTGTGTATTTGCCTGCGCT
AACTAACGCCCCTTCCTCCCGCCGGTAATATCGACGCCGTCGAGCAGGAG
GCTGCGGAAGCCGAGGAGTTGATGGCAATGATAAAGGCTCGAAACAAGGA
GCGATCCGATGCGGGCTCTTTGTCCACCCATCGTTCGAAGCAGTTCGACA
AAATGGTAATGTATTGAATCTACTTTCCCCCTGTCAGTGTATCCGAGCTT
TCCTTTCCATCTCAGAGTGTACACCCTCTGTATGTACCACCCGGTGTATC
CGAGCTCTACAGAGCCATGACGAGGCTCTAGCCTACCCCTTGAACATCGC
TTTTTTTTTCTTTCTACCCCAGACACAAAAAAAATAAATCTGTATCAGCA
GCATCGAGAGGGAAGAAGCTTAAGCCCACAACACTTTTTACCGTGTTCCG
ATTCCAGACCCATGCAGAATGCATGGAGTATTGTCTTGTCGGTCAACCCT
TCGGTTAAGCTCAAACCTAGGGTATATTGTGGGATAGCCATCCAGGACCG
CCTTCCGTCTCTGGGTTGTACGTGACTTGGCCGTTTTAGCATACGGTTTT
AGACTGCACCTGCAAAGTGCAGTATCCTCACACGTAAGACCCTTAATCTC
AACTCCTGTTCGGTCATCGGCAAAGGTTACCCTCTAGCCGTGCCCTACCC
GAAGGCTTAGACTCGTCTCTTGAGCATCGCTTTTTCAGTTACAAACATAC
ACTTTTGGATGGACTTGATTTCCGGGATAACGACTGTCAATCCCTTTTTT
GGTGGTGAACCAGCTTCCGGCAAAGGTTCTATGTAGTTGGATTCATTCGA
CGCGCGGAGGTTGACGGGACGGTTCATTTTTTTTAGCACAAAGCACAAGG
ACTAGTTTCACAATAGCGGGGATATTGGAACTGAAGCCGGAAAACGTCTA
TTTCTATCTAAGGTGGGGCATGTGTGTGCTGCTGTGGCTGGGTACGATCA
CGCTCAAACAGCACGCCACACTAGATATCTCTGTCGGTGACTAGTGCCAC
TTGTCTAAGTCTCTCCCTCTCTGGTCTTCATTTTGCCGCAACCGTGGTAC
ACATCAGCGACAATTTTCGGAAGTCACGAAGAGTGATGTTGTACAGTAGT
GTTCGACCCATGGTTACCGTCGTCCTACATCACAATTCCGTACGTACTGT
TCACGGACATCCTACACGTTTGCGTTCTTCGAACCAGCCGAGGGAATTGA
ACGATATAATCGATCGGAGTTCGGTATGTCAGAGCTTTTAGAAGGGTCTG
AGTTGCGTTTCCTCGACGTAAAAATTCGATTTGTGTTTTTTTCGCTTCGC
CCAGGTTTCGTCGCTTGAGGGACGCTATGGTGGCGGTGGCGGTTGCAGTG
CGCGCAGCAGCTCAAATAAACGCGATGCGAAAAGCACCAAGAAGGCCCCA
AGTCACAGTGACATAGACGATGATGAGTTCGATCGCGTTCAGAAGCAACT
CGAAGAGAGGCGGACCAAGCGGGTCAAGCGATAATGGGATATCGGCCATA
TGATATCTGCGCTTCTCTTTCCATGTGGCGCCGTCTTTGCACGTCCTTGA
CCCCATAACACCGGACCCTGTACAATCCTTACATAATCACTGATAGGAAA
CAAGCGAAACTCCGTTCGGAATCGTTTTATGACAAGCCCCCACTATATGG
CTATGTGGAGATGTGAGCTGGTTGGGAACGTTTCTCCTTCACCAGTTTTT
TTCTCGTTGGATGCGTGTTTTCCCAAGGACTGTGCTGGGAGCCACAACAG
CCGTGCACAGACGTGGAATCTGCACATGTTGTACCAGTCCATCACCTTGA
GATATTTGGCACAAAATCACATATTTCAGAACAAGAAATAAGTGCCACAT
GCATGGACAATTTGAATGTCTCTGATTTTCCAGGACTTGTCACGGGACCC
TCACAGGATAGGACGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4812:2532..9199-

>mRNA_H-paniculata_contig4812.11900.1 ID=mRNA_H-paniculata_contig4812.11900.1|Name=mRNA_H-paniculata_contig4812.11900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1740bp|location=Sequence derived from alignment at H-paniculata_contig4812:2532..9199- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGCAATCGAGGAACAGTTTGGCGAGGGAAAATCTTTGTACGAAGT
ACTCGACATATCACCTACTACCGACGCTGCCAACATAAAGAAGGCATACT
ACAAGGCCGCGCTCAAATATATGAACGCAATCGAGGAACAGTTTGGCGAG
GGAAAATCTTTGTACGAAGTACTCGACATATCACCTACTACCGACGCTGC
CAACATAAAGAAGGCATACTACAAGGCCGCGCTCAAATATCACCCAGACA
AATGTCCAGGAGATGAAGCAGCGAACGCTCGTTTCCAGGCACTTTCGATG
GTGCACGCCATCTTGTCTGATCCCGAAAGGCGGAGCCTTTATGACGAAAC
TGGAGAGGTGACCGAAGATGGTAACGCCGAAAGTGCGGAAGATGACGATA
TATGCACCCAGACAAATGTCCAGGAGATGAAGCAGCGAACGCTCGTTTCC
AGGCACTTTCGATGGTGCACGCCATCTTGTCTGATCCCGAAAGGCGGAGC
CTTTATGACGAAACTGGAGAGGTGACCGAAGATGGTAACGCCGAAAGTGC
GGAAGATGACGATATATGGTACGACTACTGGCGTGCTCTCTTTCCCAAAG
TCACTGAGGCCGCTATCAACTCGTTCGATGAAAAATACAAGGTACGACTA
CTGGCGTGCTCTCTTTCCCAAAGTCACTGAGGCCGCTATCAACTCGTTCG
ATGAAAAATACAAGGGCTCGGAAGAGGAGACTCGAGATGTGCTTGAGGCG
TATAAGAGGGTGAAGGGCAAGATGTCTGCGGTAACCGACTCTATCATGCT
CGCAACTGACGGGCTCGGAAGAGGAGACTCGAGATGTGCTTGAGGCGTAT
AAGAGGGTGAAGGGCAAGATGTCTGCGGTAACCGACTCTATCATGCTCGC
AACTGACGCGGATGAAGATCGGTTTCGAGGGCTCATTGAGGCGGCCATCG
AGCGAAAGGACGTGCCAACGTTTGCTGCCTTTCGGAAAAAAACTGCGAAA
AAAGCAGCGGCCAAGCGCAAGGCAAAGATGGACAAGCGGATGAAGATCGG
TTTCGAGGGCTCATTGAGGCGGCCATCGAGCGAAAGGACGTGCCAACGTT
TGCTGCCTTTCGGAAAAAAACTGCGAAAAAAGCAGCGGCCAAGCGCAAGG
CAAAGATGGACAAGGAGGCTGCGGAAGCCGAGGAGTTGATGGCAATGATA
AAGGCTCGAAACAAGGAGCGATCCGATGCGGGCTCTTTGTCCACCCATCG
TTCGAAGCAGTTCGACAAAATGGAGGCTGCGGAAGCCGAGGAGTTGATGG
CAATGATAAAGGCTCGAAACAAGGAGCGATCCGATGCGGGCTCTTTGTCC
ACCCATCGTTCGAAGCAGTTCGACAAAATGGTTTCGTCGCTTGAGGGACG
CTATGGTGGCGGTGGCGGTTGCAGTGCGCGCAGCAGCTCAAATAAACGCG
ATGCGAAAAGCACCAAGAAGGCCCCAAGTCACAGTGACATAGACGATGAT
GAGTTCGATCGCGTTCAGAAGCAACTCGAAGAGAGGCGGACCAAGCGGGT
CAAGCGATAAGTTTCGTCGCTTGAGGGACGCTATGGTGGCGGTGGCGGTT
GCAGTGCGCGCAGCAGCTCAAATAAACGCGATGCGAAAAGCACCAAGAAG
GCCCCAAGTCACAGTGACATAGACGATGATGAGTTCGATCGCGTTCAGAA
GCAACTCGAAGAGAGGCGGACCAAGCGGGTCAAGCGATAA
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