mRNA_H-paniculata_contig4811.11899.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: D8LL22_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL22_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 1.030e-16 Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 4 RAEDDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSS-SGLCPICKTE 153
R +DD CAICL+ YE+GD+LT LPCRH FH CI PWLS S LCP+CK+E
Sbjct: 373 REDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSE 423
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: A0A1D1XYA5_9ARAE (E3 ubiquitin-protein ligase RNF13 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XYA5_9ARAE) HSP 1 Score: 71.2 bits (173), Expect = 1.600e-13 Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 10 EDDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSS-SGLCPICKTE 153
E DTCAIC++ +ENGD L LPC+H++H CI PWL++ S CP+CKT+
Sbjct: 131 EVDTCAICIEDFENGDELRLLPCKHWYHVECIDPWLTTKSSSCPLCKTD 179
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: T2M3E9_HYDVU (RING finger protein 150 n=3 Tax=Hydra vulgaris TaxID=6087 RepID=T2M3E9_HYDVU) HSP 1 Score: 71.6 bits (174), Expect = 2.240e-13 Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 10 EDDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSGLCPICKTE 153
EDDTCA+CL+ Y++G+TL LPC H FH+ CI PWL CP+CK+
Sbjct: 238 EDDTCAVCLESYKDGETLRELPCIHLFHKSCIDPWLLYHRTCPMCKSN 285
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: A0A2S5BA91_9BASI (RING-type domain-containing protein n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5BA91_9BASI) HSP 1 Score: 71.2 bits (173), Expect = 3.610e-13 Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1
Query: 19 TCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSGLCPICK 147
TC +CLD ++ GD ALPC+HF+HE C+ PWL +SG CPIC+
Sbjct: 319 TCGVCLDAFQLGDGAVALPCKHFYHEDCLVPWLKTSGTCPICR 361
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: A0A3Q0SGN3_AMPCI (Ring finger protein 150a n=1 Tax=Amphilophus citrinellus TaxID=61819 RepID=A0A3Q0SGN3_AMPCI) HSP 1 Score: 69.3 bits (168), Expect = 1.630e-12 Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
Query: 7 AEDDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSGLCPICK 147
++ D CA+C++ Y+ D + LPCRHFFH+HC+ PWL CP+CK
Sbjct: 263 SDSDNCAVCIEGYKPNDVVRILPCRHFFHKHCVDPWLQDHRTCPMCK 309
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: A0A6G1C942_9ORYZ (RING-type domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1C942_9ORYZ) HSP 1 Score: 65.1 bits (157), Expect = 1.680e-12 Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 1
Query: 13 DDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSGLCPICK 147
++ CA+C++ +E GD L A+PC H FHE CI WL SG+CP+C+
Sbjct: 43 EEECAVCMEDFEAGDKLRAMPCSHCFHERCIFDWLRVSGICPLCR 87
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: A0A668VBE2_OREAU (Ring finger protein 150a n=1 Tax=Oreochromis aureus TaxID=47969 RepID=A0A668VBE2_OREAU) HSP 1 Score: 68.2 bits (165), Expect = 2.090e-12 Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 16 DTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSGLCPICK 147
D CA+C++ Y+ D + LPCRHFFH+HC+ PWL CP+CK
Sbjct: 119 DNCAVCIEGYKPNDVVRILPCRHFFHKHCVDPWLQDHRTCPMCK 162
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: A0A813FP03_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FP03_POLGL) HSP 1 Score: 68.9 bits (167), Expect = 2.110e-12 Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1
Query: 10 EDDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSGLCPICKTE 153
+D C+ICLD ++ GD LTALPC HFFH C+ W+ + CP+C+T
Sbjct: 323 KDHNCSICLDSFQEGDLLTALPCEHFFHSECVTHWMQRATRCPLCRTS 370
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: H2ZKN7_CIOSA (RING-type domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZKN7_CIOSA) HSP 1 Score: 68.9 bits (167), Expect = 2.300e-12 Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1
Query: 10 EDDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSG-LCPICK 147
E D CAICLD YE GDTL LPC+H +H C+ PWL+SS +CP+CK
Sbjct: 234 EYDVCAICLDEYEEGDTLRILPCQHAYHCKCVDPWLTSSKRVCPLCK 280
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Match: A0A015IC27_RHIIW (RING-type domain-containing protein n=8 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015IC27_RHIIW) HSP 1 Score: 68.9 bits (167), Expect = 2.350e-12 Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1
Query: 22 CAICLDLYENGDTLTALPCRHFFHEHCIGPWLSS-SGLCPICKTE 153
CAICLD +ENGD L ALPC H FH CI PWL+ S LCP+CK +
Sbjct: 464 CAICLDEFENGDQLRALPCGHEFHSECIDPWLTQKSSLCPLCKFD 508 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4811.11899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4811.11899.1 >prot_H-paniculata_contig4811.11899.1 ID=prot_H-paniculata_contig4811.11899.1|Name=mRNA_H-paniculata_contig4811.11899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp MRAEDDTCAICLDLYENGDTLTALPCRHFFHEHCIGPWLSSSGLCPICKTback to top mRNA from alignment at H-paniculata_contig4811:11708..11860- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4811.11899.1 ID=mRNA_H-paniculata_contig4811.11899.1|Name=mRNA_H-paniculata_contig4811.11899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig4811:11708..11860- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4811:11708..11860- >mRNA_H-paniculata_contig4811.11899.1 ID=mRNA_H-paniculata_contig4811.11899.1|Name=mRNA_H-paniculata_contig4811.11899.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig4811:11708..11860- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |