mRNA_H-paniculata_contig4810.11896.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4810.11896.1
Unique NamemRNA_H-paniculata_contig4810.11896.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A836CLT3_9STRA (Auxin efflux carrier n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.780e-19
Identity = 37/67 (55.22%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    7 KLLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHPDGAIVSSAVAYISFYLLGWSPMFWTAG 207
            K+LR+ P + E RE+++C++F NSG LPLLFV+++F  HPD  ++  A+AYISF+L+GWSP FWT G
Sbjct:   97 KVLRIEPTTEEGREVQVCSAFGNSGILPLLFVNALFRAHPDPTVLPRAIAYISFFLMGWSPAFWTVG 163          
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A4D9D5S5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5S5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 7.600e-19
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    7 KLLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHPDGAIVSSAVAYISFYLLGWSPMFWTAG 207
            +L+ L P S   RE+R+C++FAN+GPLPLLFVD++F  HPD  + + AVA+ISFYLL WSP+FW  G
Sbjct:  111 RLVGLNPFSEAGREVRICSTFANAGPLPLLFVDALFKNHPDPTLRTRAVAFISFYLLAWSPLFWNYG 177          
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A7S2SS74_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS74_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.980e-18
Identity = 42/66 (63.64%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   10 LLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHPDGAIVSSAVAYISFYLLGWSPMFWTAG 207
            +LR+   S   RELRM  +F NSGPLPLLF DS+F G  D  + S AVA+ISFYLLGWSPMFWT G
Sbjct:  174 VLRVPRESIPGRELRMSCAFGNSGPLPLLFADSLFAGRADPTMASRAVAFISFYLLGWSPMFWTYG 239          
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: W7U1P2_9STRA (Membrane transporter n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1P2_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.500e-17
Identity = 41/70 (58.57%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    1 MEKLLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHP-DGAIVSSAVAYISFYLLGWSPMFWTAG 207
            M   LRL P S   +EL +C++FANSGPLPLLF D+ F  HP D  +   AVAYISFYL+ WSP+FWT G
Sbjct:  203 MAASLRLDPASDAGKELAVCSAFANSGPLPLLFADAFFRLHPTDPTLYPRAVAYISFYLVAWSPLFWTLG 272          
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A7S1TU85_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU85_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.990e-17
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   22 RPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHPDGAIVSSAVAYISFYLLGWSPMFWT 201
            R     A+EL++C++F NSGPLPLL VD+ F  HPD  ++ +AV Y+SFYLLGWSP FWT
Sbjct:  119 RKSGTNAKELQICSTFGNSGPLPLLLVDAFFRNHPDPTLLPAAVGYVSFYLLGWSPAFWT 178          
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A6H5JBW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 5.550e-16
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1
Query:    1 MEKLLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHP 126
            MEK+L L+ GSPEARELR CTSFANSGPLPLLFVDSIFG HP
Sbjct:   79 MEKILGLKEGSPEARELRTCTSFANSGPLPLLFVDSIFGAHP 120          
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: D8LM61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM61_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 9.870e-16
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1
Query:    1 MEKLLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHP 126
            MEK+L L+ GSPEARELR CTSFANSGPLPLLFVDSIFG HP
Sbjct:  104 MEKILGLKEGSPEARELRTCTSFANSGPLPLLFVDSIFGAHP 145          
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A482USC9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482USC9_9ARCH)

HSP 1 Score: 79.0 bits (193), Expect = 1.470e-15
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   31 SPEARELRMCTSFANSGPLPLLFVDSIFGGHPDGAIVSSAVAYISFYLLGWSPMFWTAG 207
            S  A++L+ CT+F NSGPLPL+F D +F  H +  ++  +VAYIS YLLGWSP+FW AG
Sbjct:  221 SESAKQLQACTTFGNSGPLPLVFTDGLFRAHSNPLLLQQSVAYISLYLLGWSPLFWIAG 279          
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A7S3XRL6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRL6_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 2.830e-15
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 MEKLLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHPDGAIVSSAVAYISFYLLGWSPMFWTAG 207
            + KLL +   S E R   +C+SF N+G LP+LFV+++F GHPD  ++  A++ +SF+ LGWSP+FW  G
Sbjct:   72 LAKLLGIERASYEGRVFNVCSSFGNAGLLPMLFVNALFRGHPDPTVLPRAISSVSFFQLGWSPLFWGLG 140          
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A7S1UII2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UII2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.500e-14
Identity = 33/67 (49.25%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   10 LLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGG-HPDGAIVSSAVAYISFYLLGWSPMFWTAG 207
            LLR++P S E REL++ ++F NSG LPL+ +D++F   + D +++  +VAY+S YLLGWSP+FW+ G
Sbjct:   26 LLRIKPTSQEGRELQVSSAFGNSGTLPLVLLDALFRAPYADPSVLPRSVAYVSLYLLGWSPLFWSVG 92          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLT3_9STRA2.780e-1955.22Auxin efflux carrier n=1 Tax=Tribonema minus TaxID... [more]
A0A4D9D5S5_9STRA7.600e-1958.21Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2SS74_9STRA4.980e-1863.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U1P2_9STRA3.500e-1758.57Membrane transporter n=3 Tax=Monodopsidaceae TaxID... [more]
A0A7S1TU85_9STRA3.990e-1758.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6H5JBW8_9PHAE5.550e-1685.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM61_ECTSI9.870e-1685.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482USC9_9ARCH1.470e-1555.93Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3XRL6_HETAK2.830e-1546.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1UII2_9STRA1.500e-1449.25Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4810contigH-paniculata_contig4810:3287..3818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog2880.D7G8U0
KEGG koko:K07088
Hectar predicted targeting categoryother localisation
EggNOG free text desc.auxin efflux carrier
EggNOG OGsCOG0679@1,KOG2722@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.0162876-CDS-H-paniculata_contig4810:3286..33691622930426.0162876-CDS-H-paniculata_contig4810:3286..3369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4810 3287..3369 -
1691481286.6054392-CDS-H-paniculata_contig4810:3286..33691691481286.6054392-CDS-H-paniculata_contig4810:3286..3369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4810 3287..3369 -
1622930426.0335813-CDS-H-paniculata_contig4810:3691..38181622930426.0335813-CDS-H-paniculata_contig4810:3691..3818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4810 3692..3818 -
1691481286.6176934-CDS-H-paniculata_contig4810:3691..38181691481286.6176934-CDS-H-paniculata_contig4810:3691..3818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4810 3692..3818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4810.11896.1prot_H-paniculata_contig4810.11896.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4810 3287..3818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4810.11896.1

>prot_H-paniculata_contig4810.11896.1 ID=prot_H-paniculata_contig4810.11896.1|Name=mRNA_H-paniculata_contig4810.11896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MEKLLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHPDGAIVSSA
VAYISFYLLGWSPMFWTAG*
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mRNA from alignment at H-paniculata_contig4810:3287..3818-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4810.11896.1 ID=mRNA_H-paniculata_contig4810.11896.1|Name=mRNA_H-paniculata_contig4810.11896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=532bp|location=Sequence derived from alignment at H-paniculata_contig4810:3287..3818- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAAGCTGCTTCGTCTTAGGCCAGGATCCCCGGAGGCGCGCGAGCT ACGCATGTGCACATCATTCGCCAACTCAGGCCCTCTCCCCCTCCTATTCG TCGACTCGATTTTTGGTGGACACCCTGGTAAGTTGAACTGTCTTACTCCA GAGGACGAGAACGAGATACAGAAAAAAAAGCACAGGGGGTTCTTCCTCGC GCAATGTGACCGAGTTTGATTTAGATTTACCATGGTAAGGCTCTACGCTA AAATGTATTTGACCGTGTGAATTGGCAATTACCATACCGTGTTTATACTA CTAATGGTAGTGCTGTTGTGATTTGGTAAAGCGTTAGTTAAAGTCCTTTT TTAACCGTTTTTTTTTTTTTTCTGTGTGATGACCCTGTAACAAGCGCCTT TTTTTTTTTTTTTTCCATTTGTTGTATTGGAAAAAAATAATCATCCCAGA TGGCGCCATCGTATCGAGTGCGGTGGCATACATATCTTTTTACCTGCTTG GGTGGAGCCCCATGTTTTGGACAGCAGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4810:3287..3818-

>mRNA_H-paniculata_contig4810.11896.1 ID=mRNA_H-paniculata_contig4810.11896.1|Name=mRNA_H-paniculata_contig4810.11896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig4810:3287..3818- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAAGCTGCTTCGTCTTAGGCCAGGATCCCCGGAGGCGCGCGAGCT
ACGCATGTGCACATCATTCGCCAACTCAGGCCCTCTCCCCCTCCTATTCG
TCGACTCGATTTTTGGTGGACACCCTGATGGAAAAGCTGCTTCGTCTTAG
GCCAGGATCCCCGGAGGCGCGCGAGCTACGCATGTGCACATCATTCGCCA
ACTCAGGCCCTCTCCCCCTCCTATTCGTCGACTCGATTTTTGGTGGACAC
CCTGATGGCGCCATCGTATCGAGTGCGGTGGCATACATATCTTTTTACCT
GCTTGGGTGGAGCCCCATGTTTTGGACAGCAGGGTGAATGGCGCCATCGT
ATCGAGTGCGGTGGCATACATATCTTTTTACCTGCTTGGGTGGAGCCCCA
TGTTTTGGACAGCAGGGTGA
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