mRNA_H-paniculata_contig4810.11896.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A836CLT3_9STRA (Auxin efflux carrier n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT3_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 2.780e-19 Identity = 37/67 (55.22%), Postives = 53/67 (79.10%), Query Frame = 1
Query: 7 KLLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHPDGAIVSSAVAYISFYLLGWSPMFWTAG 207
K+LR+ P + E RE+++C++F NSG LPLLFV+++F HPD ++ A+AYISF+L+GWSP FWT G
Sbjct: 97 KVLRIEPTTEEGREVQVCSAFGNSGILPLLFVNALFRAHPDPTVLPRAIAYISFFLMGWSPAFWTVG 163
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A4D9D5S5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5S5_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 7.600e-19 Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 1
Query: 7 KLLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHPDGAIVSSAVAYISFYLLGWSPMFWTAG 207
+L+ L P S RE+R+C++FAN+GPLPLLFVD++F HPD + + AVA+ISFYLL WSP+FW G
Sbjct: 111 RLVGLNPFSEAGREVRICSTFANAGPLPLLFVDALFKNHPDPTLRTRAVAFISFYLLAWSPLFWNYG 177
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A7S2SS74_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS74_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 4.980e-18 Identity = 42/66 (63.64%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 10 LLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHPDGAIVSSAVAYISFYLLGWSPMFWTAG 207
+LR+ S RELRM +F NSGPLPLLF DS+F G D + S AVA+ISFYLLGWSPMFWT G
Sbjct: 174 VLRVPRESIPGRELRMSCAFGNSGPLPLLFADSLFAGRADPTMASRAVAFISFYLLGWSPMFWTYG 239
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: W7U1P2_9STRA (Membrane transporter n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1P2_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 3.500e-17 Identity = 41/70 (58.57%), Postives = 49/70 (70.00%), Query Frame = 1
Query: 1 MEKLLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHP-DGAIVSSAVAYISFYLLGWSPMFWTAG 207
M LRL P S +EL +C++FANSGPLPLLF D+ F HP D + AVAYISFYL+ WSP+FWT G
Sbjct: 203 MAASLRLDPASDAGKELAVCSAFANSGPLPLLFADAFFRLHPTDPTLYPRAVAYISFYLVAWSPLFWTLG 272
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A7S1TU85_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU85_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 3.990e-17 Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query: 22 RPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHPDGAIVSSAVAYISFYLLGWSPMFWT 201
R A+EL++C++F NSGPLPLL VD+ F HPD ++ +AV Y+SFYLLGWSP FWT
Sbjct: 119 RKSGTNAKELQICSTFGNSGPLPLLLVDAFFRNHPDPTLLPAAVGYVSFYLLGWSPAFWT 178
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A6H5JBW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW8_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 5.550e-16 Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1
Query: 1 MEKLLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHP 126
MEK+L L+ GSPEARELR CTSFANSGPLPLLFVDSIFG HP
Sbjct: 79 MEKILGLKEGSPEARELRTCTSFANSGPLPLLFVDSIFGAHP 120
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: D8LM61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM61_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 9.870e-16 Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1
Query: 1 MEKLLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHP 126
MEK+L L+ GSPEARELR CTSFANSGPLPLLFVDSIFG HP
Sbjct: 104 MEKILGLKEGSPEARELRTCTSFANSGPLPLLFVDSIFGAHP 145
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A482USC9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482USC9_9ARCH) HSP 1 Score: 79.0 bits (193), Expect = 1.470e-15 Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 31 SPEARELRMCTSFANSGPLPLLFVDSIFGGHPDGAIVSSAVAYISFYLLGWSPMFWTAG 207
S A++L+ CT+F NSGPLPL+F D +F H + ++ +VAYIS YLLGWSP+FW AG
Sbjct: 221 SESAKQLQACTTFGNSGPLPLVFTDGLFRAHSNPLLLQQSVAYISLYLLGWSPLFWIAG 279
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A7S3XRL6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRL6_HETAK) HSP 1 Score: 75.1 bits (183), Expect = 2.830e-15 Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1
Query: 1 MEKLLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHPDGAIVSSAVAYISFYLLGWSPMFWTAG 207
+ KLL + S E R +C+SF N+G LP+LFV+++F GHPD ++ A++ +SF+ LGWSP+FW G
Sbjct: 72 LAKLLGIERASYEGRVFNVCSSFGNAGLLPMLFVNALFRGHPDPTVLPRAISSVSFFQLGWSPLFWGLG 140
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Match: A0A7S1UII2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UII2_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.500e-14 Identity = 33/67 (49.25%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 10 LLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGG-HPDGAIVSSAVAYISFYLLGWSPMFWTAG 207
LLR++P S E REL++ ++F NSG LPL+ +D++F + D +++ +VAY+S YLLGWSP+FW+ G
Sbjct: 26 LLRIKPTSQEGRELQVSSAFGNSGTLPLVLLDALFRAPYADPSVLPRSVAYVSLYLLGWSPLFWSVG 92 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4810.11896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4810.11896.1 >prot_H-paniculata_contig4810.11896.1 ID=prot_H-paniculata_contig4810.11896.1|Name=mRNA_H-paniculata_contig4810.11896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp MEKLLRLRPGSPEARELRMCTSFANSGPLPLLFVDSIFGGHPDGAIVSSAback to top mRNA from alignment at H-paniculata_contig4810:3287..3818- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4810.11896.1 ID=mRNA_H-paniculata_contig4810.11896.1|Name=mRNA_H-paniculata_contig4810.11896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=532bp|location=Sequence derived from alignment at H-paniculata_contig4810:3287..3818- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4810:3287..3818- >mRNA_H-paniculata_contig4810.11896.1 ID=mRNA_H-paniculata_contig4810.11896.1|Name=mRNA_H-paniculata_contig4810.11896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig4810:3287..3818- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |