prot_H-paniculata_contig48083.11893.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig48083.11893.1
Unique Name	prot_H-paniculata_contig48083.11893.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	114

Homology

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BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.750e-15
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 0

Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAPLEHLQPFGVAGY 112
            +R+D+GG+F  GDF    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   +++P+E WYG   P     PF    Y
Sbjct:  159 VRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFSKPAY 277

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BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 7.070e-15
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 0

Query:    2 RTDDGGEFDGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTITLMQDLTEGGNEK-----LWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAPLEHLQPF 107
            RTD GGEF G F     + G+  E TP +TP+YN VAER LGLL +  +       E   +      LWAEA++ AC   N + T+   G+ +P E ++GT  P+    PF
Sbjct:  262 RTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF 372

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BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.600e-14
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 0

Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 100
            +R+D+GGEF  G+F    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   +++P+E WYG   P
Sbjct:  379 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRP 486

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BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.680e-14
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 0

Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 100
            +R+D+GGEF  G+F    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   +++P+E WYG   P
Sbjct:   45 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRP 152

[Close]

BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.700e-14
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 0

Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 100
            +R+D+GGEF  G+F    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   +++P+E WYG   P
Sbjct:  312 VRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRP 419

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BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.720e-14
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 0

Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 100
            +R+D+GGEF  G+F    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   + +P+E WYG   P
Sbjct:  395 VRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARP 502

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BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.110e-14
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 0

Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 100
            +R+D+GGEF  G+F    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   ++ P+E WYG   P
Sbjct:  257 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRP 364

[Close]

BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.330e-14
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 0

Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 100
            +R+D+GGEF  G+F    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   + +P+E WYG   P
Sbjct:  791 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRP 898

[Close]

BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.350e-14
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 0

Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 100
            +R+D+GGEF  G+F    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   + +P+E WYG   P
Sbjct:  498 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRP 605

[Close]

BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.810e-13
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 0

Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 100
            +R+D+GGEF  G+F    ++  +  E TP  +P++N VAER LGL+ E  +        L   +     ++LWAEAM++AC+  N +  S+   + +P+E WYG   P
Sbjct:  542 VRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARP 649

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KVR5_9PHAE	2.750e-15	36.67	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5LL52_9PHAE	7.070e-15	38.74	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JV76_9PHAE	1.600e-14	37.96	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KKK1_9PHAE	1.680e-14	37.96	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JRL9_9PHAE	1.700e-14	37.96	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JB16_9PHAE	1.720e-14	37.96	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L3Y0_9PHAE	3.110e-14	37.96	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JBA7_9PHAE	4.330e-14	37.96	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	4.350e-14	37.96	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K622_9PHAE	3.810e-13	35.19	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..107 e-value: 3.9E-10 score: 41.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..98 score: 11.586
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..105

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig48083	contig	H-paniculata_contig48083:3..344 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig48083.11893.1	mRNA_H-paniculata_contig48083.11893.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig48083 3..344 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig48083.11893.1 ID=prot_H-paniculata_contig48083.11893.1|Name=mRNA_H-paniculata_contig48083.11893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
IRTDDGGEFDGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTI
TLMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP
LEHLQPFGVAGYMH

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf