mRNA_H-paniculata_contig48083.11893.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48083.11893.1
Unique NamemRNA_H-paniculata_contig48083.11893.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.750e-15
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 1 
Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAPLEHLQPFGVAGY 336
            +R+D+GG+F  GDF    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   +++P+E WYG   P     PF    Y
Sbjct:  159 VRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPY-PFSKPAY 277
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BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 7.070e-15
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 1 
Query:    4 RTDDGGEFDGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTITLMQDLTEGGNEK-----LWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAPLEHLQPF 321
            RTD GGEF G F     + G+  E TP +TP+YN VAER LGLL +  +       E   +      LWAEA++ AC   N + T+   G+ +P E ++GT  P+    PF
Sbjct:  262 RTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF 372
[Close]
BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.600e-14
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 300
            +R+D+GGEF  G+F    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   +++P+E WYG   P
Sbjct:  379 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRP 486
[Close]
BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.680e-14
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 300
            +R+D+GGEF  G+F    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   +++P+E WYG   P
Sbjct:   45 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRP 152
[Close]
BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.700e-14
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 300
            +R+D+GGEF  G+F    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   +++P+E WYG   P
Sbjct:  312 VRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRP 419
[Close]
BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.720e-14
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 300
            +R+D+GGEF  G+F    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   + +P+E WYG   P
Sbjct:  395 VRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARP 502
[Close]
BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.110e-14
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 300
            +R+D+GGEF  G+F    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   ++ P+E WYG   P
Sbjct:  257 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGEPRP 364
[Close]
BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.330e-14
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 300
            +R+D+GGEF  G+F    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   + +P+E WYG   P
Sbjct:  791 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRP 898
[Close]
BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.350e-14
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 300
            +R+D+GGEF  G+F    ++  +  E TP  +PQYN VAER LGL+ E  +        L   +     +KLWAEAM++AC+  N +  S+   + +P+E WYG   P
Sbjct:  498 VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRP 605
[Close]
BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.810e-13
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:    1 IRTDDGGEF-DGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTIT-------LMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP 300
            +R+D+GGEF  G+F    ++  +  E TP  +P++N VAER LGL+ E  +        L   +     ++LWAEAM++AC+  N +  S+   + +P+E WYG   P
Sbjct:  542 VRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARP 649
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48083.11893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVR5_9PHAE2.750e-1536.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE7.070e-1538.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE1.600e-1437.96Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KKK1_9PHAE1.680e-1437.96Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE1.700e-1437.96Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JB16_9PHAE1.720e-1437.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3Y0_9PHAE3.110e-1437.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE4.330e-1437.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE4.350e-1437.96Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K622_9PHAE3.810e-1335.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48083contigH-paniculata_contig48083:3..344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score70.9
Seed ortholog evalue4.5e-10
Seed eggNOG ortholog400682.PAC_15712908
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930425.1296988-CDS-H-paniculata_contig48083:2..3441622930425.1296988-CDS-H-paniculata_contig48083:2..344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48083 3..344 +
1691481286.1346638-CDS-H-paniculata_contig48083:2..3441691481286.1346638-CDS-H-paniculata_contig48083:2..344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48083 3..344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48083.11893.1prot_H-paniculata_contig48083.11893.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48083 3..344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48083.11893.1

>prot_H-paniculata_contig48083.11893.1 ID=prot_H-paniculata_contig48083.11893.1|Name=mRNA_H-paniculata_contig48083.11893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
IRTDDGGEFDGDFHLKLDKKGVSHELTPLDTPQYNDVAERRLGLLHEKTI
TLMQDLTEGGNEKLWAEAMNFACDITNMSCTSSIEGNVTPFEKWYGTTAP
LEHLQPFGVAGYMH
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mRNA from alignment at H-paniculata_contig48083:3..344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48083.11893.1 ID=mRNA_H-paniculata_contig48083.11893.1|Name=mRNA_H-paniculata_contig48083.11893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig48083:3..344+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGCACGGACGACGGCGGGGAGTTCGATGGCGATTTTCACCTCAAGCT
GGACAAGAAGGGCGTTAGTCACGAGCTCACACCCCTGGACACGCCGCAAT
ACAACGACGTTGCCGAAAGGCGGCTGGGTCTACTCCACGAGAAAACGATC
ACGTTGATGCAGGATCTGACGGAGGGGGGCAACGAGAAACTATGGGCGGA
GGCGATGAACTTCGCCTGCGACATCACCAACATGAGCTGCACTTCGTCCA
TCGAAGGAAACGTTACCCCGTTTGAGAAATGGTACGGGACTACAGCGCCG
CTGGAACACCTACAACCTTTTGGGGTGGCAGGATACATGCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig48083:3..344+

>mRNA_H-paniculata_contig48083.11893.1 ID=mRNA_H-paniculata_contig48083.11893.1|Name=mRNA_H-paniculata_contig48083.11893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig48083:3..344+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGCACGGACGACGGCGGGGAGTTCGATGGCGATTTTCACCTCAAGCT
GGACAAGAAGGGCGTTAGTCACGAGCTCACACCCCTGGACACGCCGCAAT
ACAACGACGTTGCCGAAAGGCGGCTGGGTCTACTCCACGAGAAAACGATC
ACGTTGATGCAGGATCTGACGGAGGGGGGCAACGAGAAACTATGGGCGGA
GGCGATGAACTTCGCCTGCGACATCACCAACATGAGCTGCACTTCGTCCA
TCGAAGGAAACGTTACCCCGTTTGAGAAATGGTACGGGACTACAGCGCCG
CTGGAACACCTACAACCTTTTGGGGTGGCAGGATACATGCACATCCGCAC
GGACGACGGCGGGGAGTTCGATGGCGATTTTCACCTCAAGCTGGACAAGA
AGGGCGTTAGTCACGAGCTCACACCCCTGGACACGCCGCAATACAACGAC
GTTGCCGAAAGGCGGCTGGGTCTACTCCACGAGAAAACGATCACGTTGAT
GCAGGATCTGACGGAGGGGGGCAACGAGAAACTATGGGCGGAGGCGATGA
ACTTCGCCTGCGACATCACCAACATGAGCTGCACTTCGTCCATCGAAGGA
AACGTTACCCCGTTTGAGAAATGGTACGGGACTACAGCGCCGCTGGAACA
CCTACAACCTTTTGGGGTGGCAGGATACATGCAC
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