mRNA_H-paniculata_contig48061.11892.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48061.11892.1
Unique NamemRNA_H-paniculata_contig48061.11892.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig48061.11892.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA)

HSP 1 Score: 51.2 bits (121), Expect = 4.050e-5
Identity = 28/77 (36.36%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:  139 VWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMSGDGSTLVADLVGKLDLIFHSSTDVPATLEVSYLPEVNFNLFSL 369
             W +DSGA+NH+TNDLS +  +++P  G + V   +GS L    +G  +LI +S T      ++ ++P+V+ NL S+
Sbjct:   63 AWFADSGATNHLTNDLSNLQ-VKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSI 136
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BLAST of mRNA_H-paniculata_contig48061.11892.1 vs. uniprot
Match: A0A0J7KFP4_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KFP4_LASNI)

HSP 1 Score: 51.6 bits (122), Expect = 4.390e-5
Identity = 33/95 (34.74%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:   97 VALTNQNPTINNGNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMSGDGSTLVADLVGKLDLIFHSSTDVPAT----LEVSYLPEVNFNLFSL 369
            + +T++ PTINN +VW++DSGAS+HMT+       L      E  V  G+   + A  +GK ++ F +      T     +V Y+P+++ NLFSL
Sbjct:  153 LTVTSEWPTINNKDVWLADSGASDHMTSREEWFTKLESVGDRERPVTLGNNKVIFA--IGKGEIQFEARVADKITKYTMADVLYVPDISRNLFSL 245
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BLAST of mRNA_H-paniculata_contig48061.11892.1 vs. uniprot
Match: A0A5N6LS31_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LS31_9ASTR)

HSP 1 Score: 50.8 bits (120), Expect = 7.030e-5
Identity = 30/76 (39.47%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:  142 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMSGDGSTLVADLVGKLDLIFHSSTDVPATLEVSYLPEVNFNLFSL 369
            W+ DSGAS+H+TNDLS +  L  P  G + ++ GDGS+L    +G L L F+S + +  +  V  +P V+ N+ S+
Sbjct:  159 WLFDSGASHHITNDLSAL-SLHAPYDGTEELVIGDGSSLKITHIGSLSLTFNSHSLLLTS--VLCVPLVSKNIISI 231
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BLAST of mRNA_H-paniculata_contig48061.11892.1 vs. uniprot
Match: A0A5N5J6G7_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5J6G7_9ROSI)

HSP 1 Score: 50.8 bits (120), Expect = 8.230e-5
Identity = 34/91 (37.36%), Postives = 47/91 (51.65%), Query Frame = 1 
Query:   97 VALTNQNPTINNGNVWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMSGDGSTLVADLVGKLDLIFHSSTDVPATLEVSYLPEVNFNLFSL 369
            +A +N  PT      W+SDSGASNH+T+DLS M D      G+D V  G+G+ L     G   +   SST   A   + + P +  NL S+
Sbjct:  321 IASSNNQPT-----TWISDSGASNHITSDLSNM-DAHNEYHGKDHVDVGNGAGLTIANTGSSKITCGSSTF--ALKNILHCPSIAANLLSI 403
[Close]
BLAST of mRNA_H-paniculata_contig48061.11892.1 vs. uniprot
Match: A0A151SCF9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SCF9_CAJCA)

HSP 1 Score: 50.4 bits (119), Expect = 8.570e-5
Identity = 25/77 (32.47%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  139 VWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMSGDGSTLVADLVGKLDLIFHSSTDVPATLEVSYLPEVNFNLFSL 369
            +W  DSGASNH+TND+S +   ++   G+  V+ GDG++L+   +G   +    S    +   + Y+P ++ NL S+
Sbjct:   13 MWYPDSGASNHLTNDISYL-STKQEYQGKQRVLVGDGNSLLISHIGHSKMHTAQSNITFSLPNIMYIPNISKNLLSI 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48061.11892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A834W4R7_9FABA4.050e-536.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7KFP4_LASNI4.390e-534.74Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A5N6LS31_9ASTR7.030e-539.47Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A5N5J6G7_9ROSI8.230e-537.36Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
A0A151SCF9_CAJCA8.570e-532.47Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48061contigH-paniculata_contig48061:28..396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930425.0720744-CDS-H-paniculata_contig48061:27..3961622930425.0720744-CDS-H-paniculata_contig48061:27..396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48061 28..396 -
1691481286.123667-CDS-H-paniculata_contig48061:27..3961691481286.123667-CDS-H-paniculata_contig48061:27..396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48061 28..396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48061.11892.1prot_H-paniculata_contig48061.11892.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48061 28..396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48061.11892.1

>prot_H-paniculata_contig48061.11892.1 ID=prot_H-paniculata_contig48061.11892.1|Name=mRNA_H-paniculata_contig48061.11892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
LYENCFSSTVDLIDLIDVGKLDDTEDGECGLPVALTNQNPTINNGNVWVS
DSGASNHMTNDLSKMYDLRKPVAGEDVVMSGDGSTLVADLVGKLDLIFHS
STDVPATLEVSYLPEVNFNLFSL
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mRNA from alignment at H-paniculata_contig48061:28..396-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48061.11892.1 ID=mRNA_H-paniculata_contig48061.11892.1|Name=mRNA_H-paniculata_contig48061.11892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at H-paniculata_contig48061:28..396- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTACGAAAATTGTTTCTCGAGCACTGTCGACTTGATTGACTTGATTGA
TGTTGGGAAGTTGGATGATACAGAGGATGGAGAGTGCGGTTTGCCTGTAG
CTTTGACGAATCAAAATCCGACTATTAACAATGGCAATGTGTGGGTGTCT
GATTCTGGTGCAAGTAACCACATGACGAACGATCTTTCGAAAATGTATGA
CCTTCGCAAGCCGGTGGCAGGGGAAGATGTGGTAATGTCGGGGGATGGAT
CGACTCTGGTGGCAGATTTGGTGGGAAAGTTGGATTTGATTTTTCACTCC
TCGACCGATGTGCCTGCCACACTTGAAGTATCATACTTACCGGAGGTGAA
CTTCAACCTTTTTTCCCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig48061:28..396-

>mRNA_H-paniculata_contig48061.11892.1 ID=mRNA_H-paniculata_contig48061.11892.1|Name=mRNA_H-paniculata_contig48061.11892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig48061:28..396- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTACGAAAATTGTTTCTCGAGCACTGTCGACTTGATTGACTTGATTGA
TGTTGGGAAGTTGGATGATACAGAGGATGGAGAGTGCGGTTTGCCTGTAG
CTTTGACGAATCAAAATCCGACTATTAACAATGGCAATGTGTGGGTGTCT
GATTCTGGTGCAAGTAACCACATGACGAACGATCTTTCGAAAATGTATGA
CCTTCGCAAGCCGGTGGCAGGGGAAGATGTGGTAATGTCGGGGGATGGAT
CGACTCTGGTGGCAGATTTGGTGGGAAAGTTGGATTTGATTTTTCACTCC
TCGACCGATGTGCCTGCCACACTTGAAGTATCATACTTACCGGAGGTGAA
CTTCAACCTTTTTTCCCTCCTGTACGAAAATTGTTTCTCGAGCACTGTCG
ACTTGATTGACTTGATTGATGTTGGGAAGTTGGATGATACAGAGGATGGA
GAGTGCGGTTTGCCTGTAGCTTTGACGAATCAAAATCCGACTATTAACAA
TGGCAATGTGTGGGTGTCTGATTCTGGTGCAAGTAACCACATGACGAACG
ATCTTTCGAAAATGTATGACCTTCGCAAGCCGGTGGCAGGGGAAGATGTG
GTAATGTCGGGGGATGGATCGACTCTGGTGGCAGATTTGGTGGGAAAGTT
GGATTTGATTTTTCACTCCTCGACCGATGTGCCTGCCACACTTGAAGTAT
CATACTTACCGGAGGTGAACTTCAACCTTTTTTCCCTC
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