mRNA_H-paniculata_contig4805.11890.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4805.11890.1
Unique NamemRNA_H-paniculata_contig4805.11890.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4805.11890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4805contigH-paniculata_contig4805:7540..12450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930424.6292262-CDS-H-paniculata_contig4805:7539..76591622930424.6292262-CDS-H-paniculata_contig4805:7539..7659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4805 7540..7659 +
1691481285.957233-CDS-H-paniculata_contig4805:7539..76591691481285.957233-CDS-H-paniculata_contig4805:7539..7659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4805 7540..7659 +
1622930424.6422968-CDS-H-paniculata_contig4805:12193..124481622930424.6422968-CDS-H-paniculata_contig4805:12193..12448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4805 12194..12448 +
1691481285.9655306-CDS-H-paniculata_contig4805:12193..124481691481285.9655306-CDS-H-paniculata_contig4805:12193..12448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4805 12194..12448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4805.11890.1prot_H-paniculata_contig4805.11890.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4805 7540..12448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4805.11890.1

>prot_H-paniculata_contig4805.11890.1 ID=prot_H-paniculata_contig4805.11890.1|Name=mRNA_H-paniculata_contig4805.11890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
ARQLINPIDQHHIMTVLANTSKWLRTLAFASFWLASVDRQTSAFLFSPRQ
RSASTQHRHHQQRPLSHTSKINAIDNDAVLHGVTFNRMLVQNSGDTKSCR
PRNSLCAAAGAATAAAGAGAGDAPP
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mRNA from alignment at H-paniculata_contig4805:7540..12450+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4805.11890.1 ID=mRNA_H-paniculata_contig4805.11890.1|Name=mRNA_H-paniculata_contig4805.11890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4911bp|location=Sequence derived from alignment at H-paniculata_contig4805:7540..12450+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGACAACTGATTAACCCAATCGACCAACATCACATCATGACTGTTTT
AGCCAATACTAGCAAGTGGCTTCGCACCCTGGCTTTTGCAAGTTTTTGGC
TTGCATCTGTTGATCGTCAGGTAAGCCGCTTAGCCTAAGTACCGCATAGA
CGAATACAAGGAAACACATGCACTCACCAATCGTTTACATCTGGATTTCA
AGTTACCTCGATCATCAGCGTTCGATCCAGCATGTCGCAGCACATGTTTG
CTAACCTTAGTTCTAGCCCTAGTCCTTGCTGGAGCTGTTTTTTTATTAAC
GAGTGATTTACCCTGTACCTTGGCCAACACTCGTGCGCGTCTGGCCGCGC
CTTCATCACGTGTTGATCGTTGTAAACCACCTACTAGAGGTACAGACAAC
TGCAGTGTAGTACAGTAGGTCGTCTTGATTAATATTACGGCTTATCGCAG
CAAGCTTCACCCGAACCCTGCGAACTTACTGCAAGTTACCAGGTTAGTCC
AACCGAGCGGCAGTAATGCACATGCTTATACTCGTAAATCGAATGAATAG
GGGTGGGTCCTTTATTCTATGTGTTAGCTCATTCTGAACTCAGGCAAATA
CTTCCAGCTTTTTGTGAAGACCATTTGCAGGTTTGCAAGTATTCGTATTT
GGAAATTTCATATTCAATTTCTCACAGCAGTTTTTTTTTGTTTTTAAACG
AAATTTCAAACATGTGTTCCTCACTAAATTCCCGAGGTCTTGAGTAGTCG
ACCTTTCTTAGGTTTGCTTTTTTTTTTTTTCTGCTTTCCGAGGTCGCAGT
TATGTGAAATTTCGTCTGGAAGCTCGAAAAAAAGCTGCGGTCGGAAATAA
ACAACGCATTATATAGGTGAAAATTGTTCCGAAACATCCCGAATATCTTG
GTATCAATAGCCGTATTCCAGGACTATTATGTTTTCGCAATACTTCCAAC
TCTCGAACAAAGGCGAGTTATGCAACAAATCAAATATCGATGTTCTTCTG
ACGCCCTCAGGAACACCCACACCGAATTTGAGCCATTGGTGCAGTTCCGA
AAAACTTATATTGTCTTAACTTTAGTACCGAAATCCGACCCCCAGACCAG
AAAATCCAGGCGCTAGAATCCCAGGCCAGCCAGAAATAACGGATTTTCAC
GCGATCTAGTTGCCGTATTGGAGAAATATTGACGCCGGTCGACTCGTTTG
TCCCCCCGAATCGTAGGTTTCTTCGCCTCGGTGATATGTGGTTTCCTCGT
CGAGATGTCAATGAAAGACACATGCGGGGGTTTCTTTCTTGAACCGTGCT
GTACTTTCGTTTAGTATGATTGTACTGTCGAACAAGCCCATCTACAGACG
TGCTGCTGGAAGAGATTTATATGTTCCATTATTAATGAACGCCCAGCAGG
GGACACGGTGTAGCCGGTATAGTCAGCACCATTTGTACGGGAGATTACCG
GGTCATCGATTTTTCCACACACACGGCATGTACACAAGAGCTGGTGGTAT
CCCTTTAAAGCTGACGAGATCACCTGCTCATCCTGCACTTTGACAGTTCA
ATGCTTTAGGGTCAACGGTCACAGGTAGGGGGAGTGATACGAGGTGGTTG
GTAGCCCAAAACCGGTCCCAACGACCAAAATGATAATCCCCTATTTGTTT
TTTACGTCATAGCCCAAAATGACAAATTACTTTATTCAAGTATCGAATCA
TATATTGAGCAAATCTTAGCTTCGAGATTGAACTGACCAATGCCGATGTA
CTAAGTATATATCAACAGCTGTGATCTAGTGCATTTGCAGTGGGAATTTT
GGATTCGTCTTATATTGGTGACGCACGTCACGAAAATAGTGTGTGTTGAA
GATGTCTCTGTCCGTAGCTCGCTCATTATCTTGTTTAGCCAAAATGGCCA
CTGTACATACACTAGTACAGGTCACAGCGAACACAGCACAACAAACGGCG
CACTATACCTCGCCGTTGTCGACGAGAACCGCCTCATCAAAGATCGCCTG
ACTTACCATGCGACCAAGCTTTCGATACTAATTTCAAGTGTAAAGCCCTA
TACGAAAATTAAGCAGCTTCTTAGCAAGGGTTAAAAATTTACCAAGTTTC
AAAAAGAGAGAGTGACGCTAAACAATTTTTTCAGACGGGTATAGTCGCTG
GTGGGATAGAAGTCACTTCGTGGCGGTTGTACAGCAGTGCAACAGTCAGT
ACAGGCAGTAGACCAGATCACTCAACAAGACCTACTCCACCTCTTTCTGT
GCGTTTCAGTAGCTGTAAGGCTCAGCAACAAGCGAATGGGCATCCGTTGA
AAAACCAAGGCACCAGGCCGTCTGAAGAAAAAGAAACACCTGGCATGCAA
ATTGATCAAAACGAGAAGTGGAAGAAGCCCTTCAAAGCATGAAGCTGCGC
GGAAATTGAAACGTGCCGTGGAGAGAGATGGCTTGGCGTTGTCCGGGGCG
CTGTGACACCGCTTGCTACCGGCACTATTTTACTCGCTGATGGCGCGGTA
TTGCCCACAGGGTCCGGGGGAGTGACCTAGACGGCATTTGGCGGCAGCTC
AGATAGTGCACGGCGCTCAGCCATGCCTGTTGTGTATTGTGCGGACCAGG
ATAGCAGAGCAGCAGCTACAGTGTTGTGCGCGACCAACTTGCCTCAGTTC
AGTGCGATCGGCTGTTGTGGGTTCTTGCGTGTGCCTTTCTGATTGGCTCA
TTTGAAAATTTCGGATAGGTCTGAAAAAAATAATAATAACCTTGGAGACA
TATTTTCAACCGTGGACCATCCCTGTCGCTCCCCCTAACAGTTAATCACG
CCGAATGAAAACTGGGAAGTTTCGCACACGAAGGCCCCCAACTACAGGAC
GAATTTGAGGCCGCACTCCCGACCGTGAGAGCGCTGAAGATCCTGCGCGT
CGAGGGGGGGAATAAGGCAGTATGTGAAAAAAGCATATTTTTTATGTAGG
TTGGCCAATTAACTCCCCCATACTGTACTGCAATTCAGTTTCACGCTGGC
CTCCGCAGCTGGTGGCTAGGCTTCTGACTTTCCTCGAACCCTTTGATTTT
TTATGTATCGCGACCCGAGGCCTATAGCCGAATTCATCGCCGGCTCAGTA
TCGCGTTACGACCACTGTATTAAAACATGAAACCTGAAGTAGTCAGGATC
CTGGTGAACTAAAAGAAAAGAAGAAAAAAGCCTCAGGTTTTACTTTGTAT
TAAACTACTGTAGTTGTAACGCGTTAGTGAGCTCGGCGACAACGCTGTCT
GTAGGCCTCGGGGCACGATAAATCAAAGCGTTCCGTGAAGCTCAGGAGCA
CAGCAAACAGGGTACGGAAGTCAGAGCGAAACTGCACGTAGTTCAGGAGA
GCTAAGCCGGTGACCTACATACTTGAGGTGTTTTTTCTAGATGGACTTCC
TCATCTCGACCCCCGACGCGCACGATCTCCAGTGCTCTCTCGGTAGGTGA
TACTAGGTACTACTAATCTATGCTATGCGTGCTCATTGCGTCAACAGCGA
AGGGTAAGACTTCCACAATTGTTGCTCCTGAGTGGGAAACGCCACGAGGG
GGGGTATTGAAATACAAAGTGAACGCTCGAAACAACAAACTGTGCTCAGA
CGCACCCCTGATTCTCATGACGAGACAGCAGATCTTTCGAACAAGGCATG
TTTTGGGATCACCAATTGTGTACTGGTACGTCCTATTAGCGTCGAACTTT
ATGTTGAAATATTGTTGGACCAAGTAAGGCTTCTTCATCCGAGCGAGCAC
CCGTGGTGTGGAAGTATCAAAGGACACCATGGCGCTGTTACGGCTGGAAA
CCCTGAAACCCCGTACTCGAGGTTACGAGTCCATTTGTCGTGCATCTGGT
GAACCATTTTTGTTGACCGCGTCATCTGTCCCTCGTCGATGGGTTTGATG
ATCGCACCGTGTCGGAAAGGAGTTACTGTAAAGACCATAATATCATTATA
TTTACTCTGTCTCAATTATAACAATAGAGGCACCTAAGTATCTCCATTTG
TTCTTTAATGGAACTCTTCCTGTTTTTTGGTTGAAAACCCAAGTTTTGGG
TCAAACACTTGACTTTTAACACCAAAACACGCGCCGTGCAAAAAAGTACT
CGGACGAAAAATACTCTTTTTTGGGACATTTTCCGTAGAACTAAAAAAAC
GTGCATTTTTTGGCGTTTTTCGGCCGAGTGCTTTTTTCACGGCGTGTGTT
TTAGTGTTACAAGTCAACTGTTTATAACGCAATAATTCGGGGTTCAACCC
CAAAAACATGTGGGATTTTGATTGAATTAGAAAAAAAATCGAAGATAGTT
TACGTGCGTCTCTAATCACGATATAACTGTAGTGTGGGACAATACCGAAA
GTCCATAAAAAGGGCCCTTTTTCGGTGGAGTATTTTTTTTACGGTGCGTG
TTTTAGTGTTGAAAATCAACTGCTTGACCTAAACATTTGGGGTTCAATCC
AAAAACATGTACAATTCCATTAGAAATAAAAAGAAATCAGAGATGTTTAT
GTGCCTCTACAATCCTTTTCTGAGTATACTTATGAGACAGAGGAAGTATA
TTTCCTTTGTCAGTATAGAGTTTAATTCAATTTACCTCCGGCCGCTGCCG
CTTCTGTTGCTGCTAATACTACTACTACTTTGGCTTCCGCTACTTTCACT
GTAGACGTCGGCGTTTTTGTTCTCTCCTCGACAACGATCAGCCTCGACAC
AGCATCGTCATCACCAACAGCGACCTTTATCGCATACCAGTAAGATCAAC
GCTATCGACAACGATGCTGTGCTACACGGCGTCACATTTAATCGGATGCT
GGTACAGAACAGCGGGGATACGAAATCATGTCGACCAAGAAATTCGCTCT
GCGCAGCAGCAGGAGCGGCGACGGCGGCGGCGGGGGCGGGAGCGGGGGAC
GCACCTCCATT
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Coding sequence (CDS) from alignment at H-paniculata_contig4805:7540..12450+

>mRNA_H-paniculata_contig4805.11890.1 ID=mRNA_H-paniculata_contig4805.11890.1|Name=mRNA_H-paniculata_contig4805.11890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig4805:7540..12450+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGACAACTGATTAACCCAATCGACCAACATCACATCATGACTGTTTT
AGCCAATACTAGCAAGTGGCTTCGCACCCTGGCTTTTGCAAGTTTTTGGC
TTGCATCTGTTGATCGTCAGGCAAGACAACTGATTAACCCAATCGACCAA
CATCACATCATGACTGTTTTAGCCAATACTAGCAAGTGGCTTCGCACCCT
GGCTTTTGCAAGTTTTTGGCTTGCATCTGTTGATCGTCAGACGTCGGCGT
TTTTGTTCTCTCCTCGACAACGATCAGCCTCGACACAGCATCGTCATCAC
CAACAGCGACCTTTATCGCATACCAGTAAGATCAACGCTATCGACAACGA
TGCTGTGCTACACGGCGTCACATTTAATCGGATGCTGGTACAGAACAGCG
GGGATACGAAATCATGTCGACCAAGAAATTCGCTCTGCGCAGCAGCAGGA
GCGGCGACGGCGGCGGCGGGGGCGGGAGCGGGGGACGCACCTCCAACGTC
GGCGTTTTTGTTCTCTCCTCGACAACGATCAGCCTCGACACAGCATCGTC
ATCACCAACAGCGACCTTTATCGCATACCAGTAAGATCAACGCTATCGAC
AACGATGCTGTGCTACACGGCGTCACATTTAATCGGATGCTGGTACAGAA
CAGCGGGGATACGAAATCATGTCGACCAAGAAATTCGCTCTGCGCAGCAG
CAGGAGCGGCGACGGCGGCGGCGGGGGCGGGAGCGGGGGACGCACCTCCA
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