mRNA_H-paniculata_contig1185.1188.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1185.1188.1
Unique NamemRNA_H-paniculata_contig1185.1188.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1185.1188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1185contigH-paniculata_contig1185:2731..3308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size195
Cds size117
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1185.1188.1prot_H-paniculata_contig1185.1188.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1185 2747..3246 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928895.6229916-UTR-H-paniculata_contig1185:2730..27461622928895.6229916-UTR-H-paniculata_contig1185:2730..2746Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1185 2731..2746 +
1691480659.9667256-UTR-H-paniculata_contig1185:2730..27461691480659.9667256-UTR-H-paniculata_contig1185:2730..2746Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1185 2731..2746 +
1622928895.6752295-UTR-H-paniculata_contig1185:3246..33081622928895.6752295-UTR-H-paniculata_contig1185:3246..3308Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1185 3247..3308 +
1691480659.9912868-UTR-H-paniculata_contig1185:3246..33081691480659.9912868-UTR-H-paniculata_contig1185:3246..3308Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1185 3247..3308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928895.6388142-CDS-H-paniculata_contig1185:2746..27541622928895.6388142-CDS-H-paniculata_contig1185:2746..2754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1185 2747..2754 +
1691480659.9757636-CDS-H-paniculata_contig1185:2746..27541691480659.9757636-CDS-H-paniculata_contig1185:2746..2754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1185 2747..2754 +
1622928895.653825-CDS-H-paniculata_contig1185:3137..32461622928895.653825-CDS-H-paniculata_contig1185:3137..3246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1185 3138..3246 +
1691480659.9832034-CDS-H-paniculata_contig1185:3137..32461691480659.9832034-CDS-H-paniculata_contig1185:3137..3246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1185 3138..3246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1185.1188.1

>prot_H-paniculata_contig1185.1188.1 ID=prot_H-paniculata_contig1185.1188.1|Name=mRNA_H-paniculata_contig1185.1188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
MKTEISCSQANMLRMEAADPDYGRRRCAKLSIGNSCQV*
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mRNA from alignment at H-paniculata_contig1185:2731..3308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1185.1188.1 ID=mRNA_H-paniculata_contig1185.1188.1|Name=mRNA_H-paniculata_contig1185.1188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=578bp|location=Sequence derived from alignment at H-paniculata_contig1185:2731..3308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGACCGTTGCCGCGATGAAGACGTGAGAATGTTACACGAATGGAATAA
AAGATCCGAAGTACTCCGTTGTCACCTGCAGGTTAGCATGAAGGAGTGAG
CAGAGCAACAACAGCAACAGAGAGGAGGATGGCTGTGTTATAGGCAGTTC
GGCTCTACAATAACTAGGGGGAAATCTTTCTCTAGAAAATAGAAAATAAT
GGAATAAAAAAAGTAAAATATGCTGCAGGACCAAAGCCTCGAACGAATCA
TCCACAAAACAAAAAACAGAGCACCAGAAAGCTGAAGGCTTGTAGCAATT
GAAATTCAAAACTGAAATCGAGTTTCCTCTGCCCTCCTCCCTCAACGTTT
GCATGAGGCGCACCTGTTTTATCCACTCCTTGATGTCATTCTCCTTGTGC
GTACCAGGGAAATCTCTTGTAGCCAGGCTAATATGCTCAGGATGGAGGCT
GCCGACCCTGATTACGGACGCAGACGCTGTGCAAAACTCTCGATTGGCAA
TAGTTGCCAAGTCTAGTTGAAGTCCGCAGTACCCTCCCGTGTACCCGGCG
CATTCAAGCTCTTCCCGCGGATTCTTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig1185:2731..3308+

>mRNA_H-paniculata_contig1185.1188.1 ID=mRNA_H-paniculata_contig1185.1188.1|Name=mRNA_H-paniculata_contig1185.1188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig1185:2731..3308+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACATGAAGACGGAAATCTCTTGTAGCCAGGCTAATATGCTCAGG
ATGGAGGCTGCCGACCCTGATTACGGACGCAGACGCTGTGCAAAACTCTC
GATTGGCAATAGTTGCCAAGTCTAGGGAAATCTCTTGTAGCCAGGCTAAT
ATGCTCAGGATGGAGGCTGCCGACCCTGATTACGGACGCAGACGCTGTGC
AAAACTCTCGATTGGCAATAGTTGCCAAGTCTAG
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