mRNA_H-paniculata_contig47995.11877.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47995.11877.1
Unique NamemRNA_H-paniculata_contig47995.11877.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47995.11877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47995contigH-paniculata_contig47995:60..497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930422.267412-CDS-H-paniculata_contig47995:59..4971622930422.267412-CDS-H-paniculata_contig47995:59..497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47995 60..497 -
1691481284.9766445-CDS-H-paniculata_contig47995:59..4971691481284.9766445-CDS-H-paniculata_contig47995:59..497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47995 60..497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47995.11877.1prot_H-paniculata_contig47995.11877.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47995 60..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47995.11877.1

>prot_H-paniculata_contig47995.11877.1 ID=prot_H-paniculata_contig47995.11877.1|Name=mRNA_H-paniculata_contig47995.11877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
KKKFDGNCSHCRKHGHRGEDCWGAKGDDQKKTKKDLGLCWVCGSSEHIAR
QCPKRHHDTNESAVACLATIRGPKVMTTGTDDRKTTDNSALTREKEHWNS
DTGATDHMTSDETAFEDYTPTLPGTKCAIANGTFVPVEGCALCFQ*
back to top

mRNA from alignment at H-paniculata_contig47995:60..497-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47995.11877.1 ID=mRNA_H-paniculata_contig47995.11877.1|Name=mRNA_H-paniculata_contig47995.11877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=438bp|location=Sequence derived from alignment at H-paniculata_contig47995:60..497- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAAAAAGTTCGACGGCAACTGCAGCCACTGCAGGAAACATGGACATCG
CGGTGAGGATTGCTGGGGCGCCAAAGGGGATGATCAAAAGAAAACAAAAA
AGGATCTAGGCCTATGCTGGGTGTGCGGTAGCTCAGAGCACATCGCGAGA
CAGTGCCCGAAACGTCACCACGATACCAACGAAAGTGCAGTAGCATGCCT
GGCTACCATAAGAGGACCCAAGGTAATGACGACCGGAACTGACGATCGCA
AGACAACAGACAACTCTGCCTTGACCAGAGAGAAGGAACACTGGAACTCA
GACACCGGCGCGACAGACCACATGACGTCGGATGAGACTGCGTTCGAGGA
CTACACTCCAACGCTCCCGGGGACCAAGTGTGCAATCGCCAACGGGACAT
TCGTGCCGGTAGAGGGGTGCGCCTTGTGCTTCCAGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig47995:60..497-

>mRNA_H-paniculata_contig47995.11877.1 ID=mRNA_H-paniculata_contig47995.11877.1|Name=mRNA_H-paniculata_contig47995.11877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig47995:60..497- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAAAAAGTTCGACGGCAACTGCAGCCACTGCAGGAAACATGGACATCG
CGGTGAGGATTGCTGGGGCGCCAAAGGGGATGATCAAAAGAAAACAAAAA
AGGATCTAGGCCTATGCTGGGTGTGCGGTAGCTCAGAGCACATCGCGAGA
CAGTGCCCGAAACGTCACCACGATACCAACGAAAGTGCAGTAGCATGCCT
GGCTACCATAAGAGGACCCAAGGTAATGACGACCGGAACTGACGATCGCA
AGACAACAGACAACTCTGCCTTGACCAGAGAGAAGGAACACTGGAACTCA
GACACCGGCGCGACAGACCACATGACGTCGGATGAGACTGCGTTCGAGGA
CTACACTCCAACGCTCCCGGGGACCAAGTGTGCAATCGCCAACGGGACAT
TCGTGCCGGTAGAGGGGTGCGCCTTGTGCTTCCAGTAAAAGAAAAAGTTC
GACGGCAACTGCAGCCACTGCAGGAAACATGGACATCGCGGTGAGGATTG
CTGGGGCGCCAAAGGGGATGATCAAAAGAAAACAAAAAAGGATCTAGGCC
TATGCTGGGTGTGCGGTAGCTCAGAGCACATCGCGAGACAGTGCCCGAAA
CGTCACCACGATACCAACGAAAGTGCAGTAGCATGCCTGGCTACCATAAG
AGGACCCAAGGTAATGACGACCGGAACTGACGATCGCAAGACAACAGACA
ACTCTGCCTTGACCAGAGAGAAGGAACACTGGAACTCAGACACCGGCGCG
ACAGACCACATGACGTCGGATGAGACTGCGTTCGAGGACTACACTCCAAC
GCTCCCGGGGACCAAGTGTGCAATCGCCAACGGGACATTCGTGCCGGTAG
AGGGGTGCGCCTTGTGCTTCCAGTAA
back to top