prot_H-paniculata_contig4794.11869.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4794.11869.1
Unique Nameprot_H-paniculata_contig4794.11869.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length282
Homology
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BLAST of mRNA_H-paniculata_contig4794.11869.1 vs. uniprot
Match: A0A6H5KTQ0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ0_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 4.740e-41
Identity = 103/215 (47.91%), Postives = 137/215 (63.72%), Query Frame = 0 
Query:    1 MKLSVFVAVLLPGLSAFVVPNTFVASRGAKPLSVRPLLGNNAKAAVSSKETATLVEMTTSNSEDGGAWDMSQFFKGIMGTASSAKAKADTTASEVYAEMKKKVLVKHERQGLEGQLCSLLRIAGDAMSPKSEACVRRLARELEALQPNANAFGLDRVSLAGSWKLLYATVRDDGRTE-RSAEKLSAVERISYVSENYRISHT-DCGVLKVYKRVA 213
            MKLSVF+ VLLP +SAFV P   V +   +    R           SS  TA +     +N E  G W ++  ++ ++G A + KAK D+TA+EVY E+KKKVLVK ERQ LEGQL SL+RI G++MS K + CVRRLA ELE+LQ NA  FG  +  L GSWKL+Y+    +G+   R  ++L  +E ISYVSENYR+SH+ +   L+VYKRV+
Sbjct:    1 MKLSVFL-VLLPSVSAFVSPKPVVLNNHLQ----RXXXXXXXXXXXSSTPTA-VGAWKQANGE--GPWSIATLWRDVVGPAMN-KAKVDSTAAEVYHELKKKVLVKKERQSLEGQLSSLIRIEGNSMSCKKQDCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSRAACEGKGGGRGGDRLPTIEVISYVSENYRLSHSGEEDDLRVYKRVS 206
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BLAST of mRNA_H-paniculata_contig4794.11869.1 vs. uniprot
Match: D7G1W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.840e-15
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 0 
Query:  134 CVRRLARELEALQPNANAFGLDRVSLAGSWKLLYATVRDDGRTE-RSAEKLSAVERISYVSENYRISHT-DCGVLKVYKRVA 213
            CVRRLA ELE+LQ NA  FG  +  L GSWKL+Y++   +G    R  ++L+ +E ISYVSENYR+SH+ +   L+VYKRV+
Sbjct:   12 CVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSSAACEGNGGGRGGDRLTTIEDISYVSENYRLSHSGEQDDLRVYKRVS 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4794.11869.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTQ0_9PHAE4.740e-4147.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G1W5_ECTSI1.840e-1552.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..281
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.803
NoneNo IPR availableTMHMMTMhelixcoord: 3..25

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4794contigH-paniculata_contig4794:9005..14013 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4794.11869.1mRNA_H-paniculata_contig4794.11869.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4794 6003..14123 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4794.11869.1 ID=prot_H-paniculata_contig4794.11869.1|Name=mRNA_H-paniculata_contig4794.11869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp
MKLSVFVAVLLPGLSAFVVPNTFVASRGAKPLSVRPLLGNNAKAAVSSKE
TATLVEMTTSNSEDGGAWDMSQFFKGIMGTASSAKAKADTTASEVYAEMK
KKVLVKHERQGLEGQLCSLLRIAGDAMSPKSEACVRRLARELEALQPNAN
AFGLDRVSLAGSWKLLYATVRDDGRTERSAEKLSAVERISYVSENYRISH
TDCGVLKVYKRVAIKKPKTMATSIASGAIKSREDDTAMGSLVGASGAGLR
KSPSKQALVKGPAGVAKQPLRKRMFFGWRRR*
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