mRNA_H-paniculata_contig479.11860.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig479.11860.1 vs. uniprot
Match: A0A6H5L295_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L295_9PHAE) HSP 1 Score: 620 bits (1598), Expect = 2.400e-190 Identity = 497/1245 (39.92%), Postives = 604/1245 (48.51%), Query Frame = 1
Query: 397 GDREGAMYSPARKRVRIVDEKLGEFFVLLQPYTGDHNDICEVCDKGGPLLCCDFCNLVYHLNCA--KLTETPKEELWICPACTTEVIARQMNKRRRMTDDGSRASSPGPGIPGL----ERPTVYHGVKAENDAFRAFVLYKNQSMDIGLYPTVQDAARAYDRKALSLFGDAAVCNFPADEQVEVEGVGADGNTVKGVVRSFHQWRAEMQWGNKKRHLGFFERLDDASYAYNRAAVYMNGGDTPLNPIKEGYIPPPPTGLPVRVPRNKMFVQQLQGPLGPLYVAGTEEEKRQLARRRLQMTGKYHEPLIGPEHQVSRLPPLPPPSRPWAGC--------------PLDVGPPPHIAAVARGSTVLEKVASLEGEDTITVAD--CVGNEAAATEQMEGRRYWAAGVASASTNAGNSVTSVPLVDGTKCIGMVAVAAAAXAADDSATRSEGQIRSCPMEEDVLTSSPSPPSPQGNRSSSGPVHSACPAVVHKSAGRAADHSGSAPTSRSSNAITTVCRIKVEKPSASKGFDNTPDTITSSEGATPSPVRTAVAASLVDDDQ----EKKSAGEASEGSNEKEVSITPSTREVAGIAVGVSAVLPSMRTYLENDNKSKPPEGSEQAVAVGAAPARAAIVDMPRPATDQGPSVCAKHNLSSLSPSRHCLKTGTHDGKHLEI--DTSLPEVLGEGL------------GRGDLCLSQTDETVGEEKERLEVSSGASSSPASRSSSPFLERLPIHIAFAAAVQDASAVVASTRAPSPMPAPTVSSFTPVPGMG------SGRNASDVHPSAGKSCSSNSSSTTASLSPVLPQFSAVRVSETAVSRKRKLPAATTSKVSLSPSRSGGSGDTIGCSANGYSCGASRQVDGMGVK------------------------PDLSLDDVAELMWRPRAGPRPRGMESAAMNSARRGGDAGGDERLERLARAMWDKDSTLLERVAPAHLEKVMHVLQTCRHDVDRAAQMLTVRLGIQVEGLG-VRTTRHSRAEK-------------------------------------------QSSTSPRKPTQIGPGLSWRGGVSSSGGAGGVSSGSRGGASLAGGSQSGXXXXXXXXXXXXXXRKADAQGLTREDTKQANDAFMRFGRDLNAVQTALGWNKKRVVEYYYCVWKFSPQYQVWKARRHHAGLPGVGGGAGGKQYTSPAGSAPLGGVLGSGLPNAAADGMRWRGSRLRTLKTGSSQ 3789
G R G +RKRVR+ DEKLGEF VLL PY GDHNDICEVCDKGG LLCCDFCNLVYHL C KLTE P E+LW+CPACT EV +R++ KRRR+ +DG R++SPGPG G ER Y GVKAENDAFRAFVLYKNQ+MDIGL+PT Q AARAYDRKALSLFGDAAVCNFPADEQVEVEGV DG TVKGVVRSFHQWRAEMQWGNKKRHLGFFERL+ AS AYNRAA+YMNG +TPLNP KEGY+PPP TG VRVPRNK+FVQQL PL + RRR QM GKYH PL+G HQVSRLPPL P G A G+TV + + E + CV A ++ + + VA+ + +P V GT V A A+ A +G+ R+ D + P+ P V ++C + ++A A A TT I V S+S GF P + +G + A +L + S G+ + +N ++ + R + +E DN+ E + VA A P A + + + G V +++S + + + + S ++L G + T E ER S A P + L R P S+ APSP + ++ TP+ +G A++ A K S +S T + S V P A S A RKR+L PDLS +DVAEL+W PR+GP+PRG AA RG A LE+ AMWD+DS LLERVAPAH EK M VLQ RHDV+RAAQMLTVR GI V GL VRTTR+ RAE Q++ +PR P P V ++ G +SG RG XXXXXXX +KADAQG+T E+ K A DAFMR GRDLNAVQ ALGW + RVVEYYYCVWK+SP YQVWKA RH AGLPGV GAG S S+ GG+ G G+ A++DGMRWRGSRLRTLK SSQ
Sbjct: 118 GSRSGNTSGVSRKRVRVRDEKLGEFAVLLAPYKGDHNDICEVCDKGGDLLCCDFCNLVYHLCCVTPKLTELPDEDLWMCPACTAEVTSREIAKRRRL-EDGGRSTSPGPGGSGRHHGQERARGYQGVKAENDAFRAFVLYKNQTMDIGLFPTAQAAARAYDRKALSLFGDAAVCNFPADEQVEVEGVATDGTTVKGVVRSFHQWRAEMQWGNKKRHLGFFERLEHASQAYNRAALYMNGPETPLNPTKEGYVPPPLTGRSVRVPRNKLFVQQLPLPLIAQAQVEGSNNSAEFVRRRQQMRGKYHSPLVGDNHQVSRLPPLXXXXXXXXXXXXXXXXXXXXXXXXPSSTG---EAAMSLLGATVAAAPGARKSESRVNGGGTTCVDLPEALQVEVSSKLVISQAVAAPAXXXXXXXXXLPTVVGTVTYSPVVSAVASQA-----VAGKGKGRATAAANDTVGCPPATKPPPAA------VEASCADSLPEAAAGA------------ETAFTTKSAI-VPAASSSAGFAKPP--AAAEDGVSKHRAACVAATALTSPPRGLTKAVNSTGDGTLLANRGDMMMLDLERPWRS----------QLADSMEVDNRMGLDEAAANTVASVATPPPADVSGIK---AEDGSIVITAGTTTTVS---EVFLKAVYPAAAVAVAAEASRSQILAGGCETFTWGQTKPTEAEASVAPPSTPRRASAESERGGGSRTADYRPVTGWERTTLMRAP-----------------SSPAPSPPQSSLPANGTPILASSGATRGQAGVGAAETASLAMKPLRSAVASATPASSSVTPP--ARSPSPNAAGRKRRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSFEDVAELVWDPRSGPKPRG---AAEARGPRGAAATNRSPLEQ---AMWDRDSALLERVAPAHAEKSMQVLQMHRHDVERAAQMLTVRHGIHVVGLSSVRTTRNKRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSNGRASFEGWQAAAAPRAPAAAKP-------VGTASPTHGRASGPRGXXXXX------XXXXXXXGGTPRCGKKADAQGVTHEEAKLAGDAFMRHGRDLNAVQKALGWKRSRVVEYYYCVWKYSPAYQVWKATRHKAGLPGVSKGAGTGGAGSGIHSSSAGGLTGGGILKASSDGMRWRGSRLRTLKAPSSQ 1278
BLAST of mRNA_H-paniculata_contig479.11860.1 vs. uniprot
Match: D7FQ97_ECTSI (Chromodomain helicase-DNA-binding protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ97_ECTSI) HSP 1 Score: 343 bits (879), Expect = 1.590e-103 Identity = 167/214 (78.04%), Postives = 181/214 (84.58%), Query Frame = 1
Query: 427 ARKRVRIVDEKLGEFFVLLQPYTGDHNDICEVCDKGGPLLCCDFCNLVYHLNCA--KLTETPKEELWICPACTTEVIARQMNKRRRMTDDGSRASSPGPGIPGL----ERPTVYHGVKAENDAFRAFVLYKNQSMDIGLYPTVQDAARAYDRKALSLFGDAAVCNFPADEQVEVEGVGADGNTVKGVVRSFHQWRAEMQWGNKKRHLGFFERLD 1050
+RKRVR+ DEKLGEF VLL PY GDHNDICE+CDKGG LLCCDFCNLVYHL C KLTE P E+LW+CPACT EV +RQ+ KRRR+ +DG R++SPGPG G ER Y GVKAENDAFRAFVLYKNQ+MDIGL+PT Q AARAYDRKALSLFGDAAVCNFPADEQVEVEGV DG TVKGVVRSFHQWRAEMQWGNKKRHLGFFER +
Sbjct: 58 SRKRVRVRDEKLGEFAVLLAPYEGDHNDICEICDKGGDLLCCDFCNLVYHLCCVTPKLTELPDEDLWMCPACTAEVTSRQIAKRRRL-EDGGRSTSPGPGGSGRHHGQERVRGYQGVKAENDAFRAFVLYKNQTMDIGLFPTAQAAARAYDRKALSLFGDAAVCNFPADEQVEVEGVATDGTTVKGVVRSFHQWRAEMQWGNKKRHLGFFERRE 270
BLAST of mRNA_H-paniculata_contig479.11860.1 vs. uniprot
Match: D7FQ98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ98_ECTSI) HSP 1 Score: 230 bits (587), Expect = 3.050e-61 Identity = 166/340 (48.82%), Postives = 186/340 (54.71%), Query Frame = 1
Query: 2920 SLDDVAELMWRPRAGPRPRGMESAAMNSARRGGDAGGDERLERLARAMWDKDSTLLERVAPAHLEKVMHVLQTCRHDVDRAAQMLTVRLGIQVEGLG-VRTTRHSRAEK-------------------------------------------------QSSTSPRKPTQIGPGLSWRGGVSSSGGAGGVSSGSRGGASLAGGSQSGXXXXXXXXXXXXXXRKADAQGLTREDTKQANDAFMRFGRDLNAVQTALGWNKKRVVEYYYCVWKFSPQYQVWKARRHHAGLPGVGGGAGGKQYTSPAGSAPLGGVLGSGLPNAAADGMRWRGSRLRTLKTGSSQ 3789
S DVAEL+W PR+GP+PRG AA RG A LE+ AMWD+DSTLLERVAPAH EK M VLQ RHDV+RAAQMLTVR GI V GL VRTTR+ RAE Q++ +PR P V + S XXXXXXXX +KADAQG+TRE+ K A DAFMR GRDLNAVQ LGW + RVVEYYYCVWK+SP YQVWKA RH AGLPGV GAG S SA GG+ G G+ NA++DGMRWRGSRLRTLK SSQ
Sbjct: 211 SSSDVAELVWDPRSGPKPRG---AAEARGPRGVAAANRSPLEQ---AMWDRDSTLLERVAPAHAEKSMQVLQMHRHDVERAAQMLTVRHGIHVMGLSSVRTTRNKRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRASFEGWQAAAAPRAPPAAKA----------------VGTASPXXXXXXXXXXXXXXXXXXXXGAPRCGKKADAQGVTREEAKLAGDAFMRHGRDLNAVQKTLGWKRSRVVEYYYCVWKYSPAYQVWKATRHKAGLPGVSKGAGTGGAGSGVHSASAGGLTGGGILNASSDGMRWRGSRLRTLKAPSSQ 528
BLAST of mRNA_H-paniculata_contig479.11860.1 vs. uniprot
Match: I0Z4T9_COCSC (Uncharacterized protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z4T9_COCSC) HSP 1 Score: 90.1 bits (222), Expect = 6.630e-15 Identity = 56/150 (37.33%), Postives = 80/150 (53.33%), Query Frame = 1
Query: 706 SPGPGIPGLERPT-VYHGVKAENDA--FRAFVLYKNQSMDIGLYPTVQDAARAYDRKALSLFGDAAVCNFP----ADEQVEVEGVGADG-------NTVKGVVRSFHQWRAEMQWGNKKRHLGFFERLDDASYAYNRAAVYMNGGDTPLN 1113
+PG IPG+ R T +Y GV D +RA + Y + +G Y T +DAARAYDRKAL G +A+ NFP A E + +G + + +GV +S +W+A ++ N KR LG FE +A+ AY+ AAV + G N
Sbjct: 73 APGTRIPGMGRGTSLYRGVSKAGDKKKWRAMIQYNHMQHHVGYYATAEDAARAYDRKALLFMGPSAITNFPPSNYAGEDLTADGTAEEQAKKRRRTSAFRGVTKSGGKWKASIRANNVKRDLGVFEDELEAARAYDAAAVQLLGESAVTN 222
BLAST of mRNA_H-paniculata_contig479.11860.1 vs. uniprot
Match: A0A8J9RXU9_9CHLO (Probable AP2-like ethylene-responsive transcription factor PLT2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RXU9_9CHLO) HSP 1 Score: 90.9 bits (224), Expect = 1.780e-14 Identity = 54/139 (38.85%), Postives = 79/139 (56.83%), Query Frame = 1
Query: 721 IPGLERPT-VYHGVKAENDA--FRAFVLYKNQSMDIGLYPTVQDAARAYDRKALSLFGDAAVCNFP----ADEQVEVEGVGADG-------NTVKGVVRSFHQWRAEMQWGNKKRHLGFFERLDDASYAYNRAAVYMNG 1095
IPG+ R T +Y GV D +RA + Y ++ +G YPT ++AARAYDRKAL G +A+ NFP A E + EG + ++ +GV R+ +W+A ++ N K+ LG FE DA+ AY+ AAV + G
Sbjct: 84 IPGMGRGTSLYRGVSKAGDKKKWRAMIQYNHEQHHVGYYPTAEEAARAYDRKALLFMGPSAITNFPPTDYAGEDLTAEGTAEEQAKKRRRTSSFRGVTRAGGKWKAAIRANNVKKDLGVFEDELDAARAYDAAAVQLLG 222
BLAST of mRNA_H-paniculata_contig479.11860.1 vs. uniprot
Match: A0A7R9UFM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFM1_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 3.170e-10 Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1
Query: 502 HNDICEVCDKGGPLLCCDFCNLVYHLNCA--KLTETPKEELWICPACTTEVIA 654
HND+CE+CD+GG ++CCD CNL YH +C KL + P E W+CPAC + ++
Sbjct: 12 HNDVCEICDEGGDIICCDTCNLSYHGSCLEPKLEDVP--EFWMCPACRVKFVS 62
BLAST of mRNA_H-paniculata_contig479.11860.1 vs. uniprot
Match: A0A7S3M305_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M305_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 7.180e-9 Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1
Query: 499 DHNDICEVCDKGGPLLCCDFCNLVYHLNC--AKLTETPKEELWICPAC 636
DH+++CEVC+KGG LLCCD C LV+HL C KL+ PK W CP C
Sbjct: 68 DHDEVCEVCEKGGDLLCCDTCTLVFHLKCFRPKLSGIPKGS-WSCPHC 114
BLAST of mRNA_H-paniculata_contig479.11860.1 vs. uniprot
Match: K0T856_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T856_THAOC) HSP 1 Score: 67.8 bits (164), Expect = 2.570e-7 Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1
Query: 490 YTGDHNDICEVCDKGGPLLCCDFCNLVYHLNCAK--LTETPKEELWICPACTTE-VIARQMNK 669
+ HND+CEVC++ G LLCC CNLV+H+ C + LT+ P E+ W CP C + VI Q ++
Sbjct: 379 FFSQHNDLCEVCNEPGELLCCGSCNLVFHVKCVRPILTDEPAEDDWNCPYCIADGVIGGQKSR 441
BLAST of mRNA_H-paniculata_contig479.11860.1 vs. uniprot
Match: A0A0B7C4I4_9EUPU (PHD-type domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7C4I4_9EUPU) HSP 1 Score: 58.2 bits (139), Expect = 1.760e-6 Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1
Query: 499 DHNDICEVCDKGGPLLCCDFCNLVYHLNCAK--LTETPKEELWICPAC 636
+H+D C C KGG LL C+ C LVYHL+C LTE PK W CP C
Sbjct: 2 NHDDYCAACGKGGQLLMCETCRLVYHLDCLNPPLTEAPKYA-WSCPKC 48
BLAST of mRNA_H-paniculata_contig479.11860.1 vs. uniprot
Match: A0A448ZGV2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGV2_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.590e-6 Identity = 32/95 (33.68%), Postives = 52/95 (54.74%), Query Frame = 1
Query: 424 PARKRVRIVDEKLGEFFVLLQPYTGDHNDICEVCDKGGPLLCCDFCNLVYHLNCAKLTETPKE----ELWICPACTTEVIARQMN-KRRRMTDDG 693
PA +VDE + ++ +TG+H D C VC KGG L CC++C+ V H +C + T KE E ++C C +++R+ ++RR+ G
Sbjct: 644 PAIDVGALVDEIKSGRYPSIKVFTGEHQDFCIVCKKGGTLFCCEYCSNVEHFSCIRTKYTLKEPEPDEDFMCHRCIGVILSRRARAEKRRLLKQG 738 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig479.11860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig479.11860.1 >prot_H-paniculata_contig479.11860.1 ID=prot_H-paniculata_contig479.11860.1|Name=mRNA_H-paniculata_contig479.11860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1244bp MALRMDSGVQNAPTHQRTALPKRTSPPDGKSAPPLNGAPSSAVGGRSPASback to top mRNA from alignment at H-paniculata_contig479:10436..22562+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig479.11860.1 ID=mRNA_H-paniculata_contig479.11860.1|Name=mRNA_H-paniculata_contig479.11860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12127bp|location=Sequence derived from alignment at H-paniculata_contig479:10436..22562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig479:10436..22562+ >mRNA_H-paniculata_contig479.11860.1 ID=mRNA_H-paniculata_contig479.11860.1|Name=mRNA_H-paniculata_contig479.11860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7464bp|location=Sequence derived from alignment at H-paniculata_contig479:10436..22562+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |