mRNA_H-paniculata_contig4788.11855.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4788.11855.1
Unique NamemRNA_H-paniculata_contig4788.11855.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4788.11855.1 vs. uniprot
Match: D8LG20_ECTSI (Peroxyredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG20_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 1.390e-99
Identity = 159/206 (77.18%), Postives = 173/206 (83.98%), Query Frame = 2 
Query:   92 MKMASLARAVGGCMALNGVQGFIAPSTAGRTLGARSIHTTNSRLAMVIKEGDKFP-ESSFQILKDGGPKDVSSAELLSGKKVVICGVPGAFTPTCSDNHLPSFIQLADQFKAKGVDTVACMAVNDAFVMSRWIKSLEGEDKVTMLADGGAAFAEASGLVVKTGNFGGPRLNRLAMIVNDGTIEKLFLEEGTGYSDKSSGDNVLAAL 706
            MKM+ LARAVGGC+AL   QGF+A S  GRT G RSIH   SRLAM IKEGDKFP +S+FQI  D GP DV ++E+ +GKKVVICGVPGAFTPTC DNHLPSFI  AD+FK KGVDTVACM+VNDAFVMSRWIKSL+ EDKVTMLADGGA FAE SGL VKTG FGG RL RLAMIVNDGTIEKLFLE+GTGY+D SSGD VLAAL
Sbjct:    1 MKMSVLARAVGGCVALRSAQGFVASSAVGRTTGVRSIHQA-SRLAMAIKEGDKFPMDSTFQIKGDAGPADVPASEIFAGKKVVICGVPGAFTPTCDDNHLPSFIANADKFKEKGVDTVACMSVNDAFVMSRWIKSLDAEDKVTMLADGGAVFAEESGLCVKTGKFGGTRLQRLAMIVNDGTIEKLFLEDGTGYTDVSSGDTVLAAL 205
[Close]
BLAST of mRNA_H-paniculata_contig4788.11855.1 vs. uniprot
Match: B7ZGN1_9PHAE (Peroxyredoxin n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN1_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 1.230e-80
Identity = 129/161 (80.12%), Postives = 141/161 (87.58%), Query Frame = 2 
Query:  227 MVIKEGDKFPE-SSFQILKDGGPKDVSSAELLSGKKVVICGVPGAFTPTCSDNHLPSFIQLADQFKAKGVDTVACMAVNDAFVMSRWIKSLEGEDKVTMLADGGAAFAEASGLVVKTGNFGGPRLNRLAMIVNDGTIEKLFLEEGTGYSDKSSGDNVLAAL 706
            M IKEGDKFP  +SFQIL DGGP DV +A++ +GKKVVICGVPGAFTPTCSD+HLPSFI LAD+FKAKGVDTVAC++VNDAFVMSRWIKSL+  DKVTMLADGG  FAE SGL VKTG FGG RL RLAMIVNDGTIEKLFLE+GTGY+D SSG  VLAAL
Sbjct:    1 MAIKEGDKFPAGTSFQILGDGGPADVPAADVFAGKKVVICGVPGAFTPTCSDDHLPSFIALADEFKAKGVDTVACLSVNDAFVMSRWIKSLDAADKVTMLADGGGVFAEESGLCVKTGKFGGTRLQRLAMIVNDGTIEKLFLEDGTGYTDLSSGAGVLAAL 161
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BLAST of mRNA_H-paniculata_contig4788.11855.1 vs. uniprot
Match: A0A836CPD9_9STRA (Peroxyredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPD9_9STRA)

HSP 1 Score: 207 bits (528), Expect = 3.180e-60
Identity = 110/199 (55.28%), Postives = 144/199 (72.36%), Query Frame = 2 
Query:  116 AVGGCMALN-GVQGFIAPSTAGRTLGARSIHTTNSRLAMVIKEGDKFP-ESSFQILKDGGPKDVSSAELLSGKKVVICGVPGAFTPTCSDNHLPSFIQLADQFKAKGVDTVACMAVNDAFVMSRWIKSLEGEDKVTMLADGGAAFAEASGLVVKTGNFGGPRLNRLAMIVNDGTIEKLFLEEGTGYSDKSSGDNVLAAL 706
            A+  C+ LN   + FI+  T       R  H++  RLAMV+KEGDK P +++FQ L DG P  VS+A+L +GKKVVICGVPGA TPTCS++H+P+FI   D FKAKGVDTVA ++VND FVMS W K LE  D + ML DG AAFA+++GL + TG+FGG RL R+AM+VNDG +EKL +E+G G++D S   ++LAAL
Sbjct:    7 AISSCLLLNTSARAFISKGTP----PPRYFHSSR-RLAMVLKEGDKLPMDATFQRLVDGKPTPVSAADLFAGKKVVICGVPGAMTPTCSESHVPTFINAIDDFKAKGVDTVAVISVNDPFVMSAWGKKLEVGDSIMMLGDGSAAFAKSTGLNMDTGDFGGVRLKRMAMLVNDGVVEKLGVEDGGGFTDISDAKSILAAL 200
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BLAST of mRNA_H-paniculata_contig4788.11855.1 vs. uniprot
Match: A0A7S2UXL6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXL6_9STRA)

HSP 1 Score: 201 bits (512), Expect = 7.560e-58
Identity = 104/191 (54.45%), Postives = 139/191 (72.77%), Query Frame = 2 
Query:  137 LNGVQGFIAPSTAGRTLGARSIHTTNSRLAMVIKEGDKFP-ESSFQILKDGGPKDVSSAELLSGKKVVICGVPGAFTPTCSDNHLPSFIQLADQFKAKGVDTVACMAVNDAFVMSRWIKSLEGEDKVTMLADGGAAFAEASGLVVKTGNFGGPRLNRLAMIVNDGTIEKLFLEEGTGYSDKSSGDNVLAAL 706
            L G Q F++ + A   + ARS+   +  LAMV  EGDK P +  FQ+L DG P ++ ++EL +GKKV ICG+PGAFTPTCS+ HLP FI++A+  KAKGVDTV C++VND FVM  W K L  +DKVTMLADGGAAFA+A+GL   TG+FGG RL RL+M+V+DG I KL +E+G+ ++D SS + +L  +
Sbjct:   15 LMGSQAFLSSTMA---VQARSLGGKSHGLAMVA-EGDKIPLDGVFQLLADGKPSELPASELFAGKKVAICGLPGAFTPTCSNTHLPGFIEVAEDIKAKGVDTVCCISVNDPFVMGAWGKQLGADDKVTMLADGGAAFAKATGLDFDTGSFGGTRLKRLSMLVDDGVISKLNVEDGSAFTDISSAETLLGQI 201
[Close]
BLAST of mRNA_H-paniculata_contig4788.11855.1 vs. uniprot
Match: A0A7S2UXP0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXP0_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.940e-56
Identity = 97/165 (58.79%), Postives = 126/165 (76.36%), Query Frame = 2 
Query:  215 SRLAMVIKEGDKFP-ESSFQILKDGGPKDVSSAELLSGKKVVICGVPGAFTPTCSDNHLPSFIQLADQFKAKGVDTVACMAVNDAFVMSRWIKSLEGEDKVTMLADGGAAFAEASGLVVKTGNFGGPRLNRLAMIVNDGTIEKLFLEEGTGYSDKSSGDNVLAAL 706
            S LAMV  EGDK P +  FQ+L DG P ++ ++EL +GKKV ICG+PGAFTPTCS+ HLP FI++A+  KAKGVDTV C++VND FVM  W K L  +DKVTMLADGGAAFA+A+GL   TG+FGG RL RL+M+V+DG I KL +E+G+ ++D SS + +L  +
Sbjct:   34 SSLAMVA-EGDKIPLDGVFQLLADGKPSELPASELFAGKKVAICGLPGAFTPTCSNTHLPGFIEVAEDIKAKGVDTVCCISVNDPFVMGAWGKQLGADDKVTMLADGGAAFAKATGLDFDTGSFGGTRLKRLSMLVDDGVISKLNVEDGSAFTDISSAETLLGQI 197
[Close]
BLAST of mRNA_H-paniculata_contig4788.11855.1 vs. uniprot
Match: A0A836CG28_9STRA (Peroxyredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG28_9STRA)

HSP 1 Score: 176 bits (447), Expect = 6.150e-49
Identity = 89/161 (55.28%), Postives = 112/161 (69.57%), Query Frame = 2 
Query:  227 MVIKEGDKFP-ESSFQILKDGGPKDVSSAELLSGKKVVICGVPGAFTPTCSDNHLPSFIQLADQFKAKGVDTVACMAVNDAFVMSRWIKSLEGEDKVTMLADGGAAFAEASGLVVKTGNFGGPRLNRLAMIVNDGTIEKLFLEEGTGYSDKSSGDNVLAAL 706
            M +KEGD  P ++ F  L DG P +V +A+L +GKKV ICGVPGA TPTCS+ HLP FI   ++ K+KGVDTVAC++VND FVM  W K LE +DKV MLADGGA FA+A G    T +FGG RL RLAM+V DG ++KL +E+G  +   S    +L AL
Sbjct:    1 MALKEGDMVPMDAVFSRLVDGKPTNVPAADLFAGKKVAICGVPGAMTPTCSEKHLPGFIAALEELKSKGVDTVACISVNDPFVMGAWGKKLECDDKVMMLADGGANFAKAIGHEFDTKDFGGIRLKRLAMLVKDGVVQKLGVEDGGAFEGASDVKTILEAL 161
[Close]
BLAST of mRNA_H-paniculata_contig4788.11855.1 vs. uniprot
Match: UPI000366DB32 (peroxiredoxin n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000366DB32)

HSP 1 Score: 172 bits (436), Expect = 2.490e-47
Identity = 87/161 (54.04%), Postives = 110/161 (68.32%), Query Frame = 2 
Query:  227 MVIKEGDKFPESSFQILKDGGPKDVSSAELLSGKKVVICGVPGAFTPTCSDNHLPSFIQLADQFKAKGVDTVACMAVNDAFVMSRWIKSLEGEDKVTMLADGGAAFAEASGLVVKTGNFG-GPRLNRLAMIVNDGTIEKLFLEEGTGYSDKSSGDNVLAAL 706
            M IK GD  PE+ F I+ +GGPK VSS+E+  GK VV+  VPGAFTPTCS+ HLP F+  AD  KAKGVDTVAC AVND FV++ W K+ + +D V MLADG A FA+A GL +    FG G R  R AMIV DG ++ L +E+     +K++ + VLAAL
Sbjct:    1 MSIKVGDTLPEAKFTIMGEGGPKPVSSSEVFKGKTVVLFAVPGAFTPTCSEQHLPGFVGRADDLKAKGVDTVACTAVNDVFVLTAWAKARDAQDDVEMLADGNADFAKAIGLDIDLSGFGLGTRSKRYAMIVEDGVVKYLGIEDSPPEHNKATAEKVLAAL 161
[Close]
BLAST of mRNA_H-paniculata_contig4788.11855.1 vs. uniprot
Match: A0A5S9IM09_9BACT (Glutathione-dependent peroxiredoxin n=1 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9IM09_9BACT)

HSP 1 Score: 171 bits (432), Expect = 8.050e-47
Identity = 87/159 (54.72%), Postives = 111/159 (69.81%), Query Frame = 2 
Query:  230 VIKEGDKFPESSFQILKDGGPKDVSSAELLSGKKVVICGVPGAFTPTCSDNHLPSFIQLADQFKAKGVDTVACMAVNDAFVMSRWIKSLEGEDKVTMLADGGAAFAEASGLVVKTGNFGGPRLNRLAMIVNDGTIEKLFLEEGTGYSDKSSGDNVLAAL 706
            +IK GDK PE +FQ + DG P+++S+ ++ SGKKVV+  VPGAFTPTCS+ HLP F+ L D+ K KGVDTVAC AVNDAF+M  W KS  G + ++MLADG   FA+A G    TG FGG R NR A++ NDG +E +F+EE  G    SS + VL AL
Sbjct:    1 MIKVGDKLPEVTFQQMCDGKPQNLSTNDVFSGKKVVVFAVPGAFTPTCSEQHLPGFVALCDKIKEKGVDTVACTAVNDAFIMDAWQKS-RGAENISMLADGSGQFAKAIGAEKDTGIFGGIRSNRYALVANDGVVEHVFVEE-PGKFTVSSAEAVLEAL 157
[Close]
BLAST of mRNA_H-paniculata_contig4788.11855.1 vs. uniprot
Match: A0A3B9AG14_9GAMM (Glutathione-dependent peroxiredoxin n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A3B9AG14_9GAMM)

HSP 1 Score: 169 bits (429), Expect = 2.400e-46
Identity = 89/161 (55.28%), Postives = 106/161 (65.84%), Query Frame = 2 
Query:  227 MVIKEGDKFPESSFQILKDGGPKDVSSAELLSGKKVVICGVPGAFTPTCSDNHLPSFIQLADQFKAKGVDTVACMAVNDAFVMSRWIKSLEGEDKVTMLADGGAAFAEASGLVVKTGNFG-GPRLNRLAMIVNDGTIEKLFLEEGTGYSDKSSGDNVLAAL 706
            M IK GDK PE  F ++ + GP  +S+ +L  GKKVVI  VPGAFTPTCS  HLP F+  AD+ KAKGVDTVAC AVND FVM  W KS    DKV MLADG   +A+A GL +    FG G R  R A++V DGT+ K F+EE  G  + SS +NVLA L
Sbjct:    1 MTIKTGDKVPEGRFNVMNEDGPGSLSTKDLFGGKKVVIFSVPGAFTPTCSRQHLPGFVDKADEIKAKGVDTVACTAVNDVFVMDAWGKSANAGDKVLMLADGNGEYAKALGLEMDGTGFGLGMRGARFALVVEDGTVTKTFIEEA-GSFEVSSAENVLANL 160
[Close]
BLAST of mRNA_H-paniculata_contig4788.11855.1 vs. uniprot
Match: A0A2E0LGK8_9GAMM (Glutathione-dependent peroxiredoxin n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A2E0LGK8_9GAMM)

HSP 1 Score: 169 bits (427), Expect = 4.670e-46
Identity = 91/161 (56.52%), Postives = 106/161 (65.84%), Query Frame = 2 
Query:  227 MVIKEGDKFPESSFQILKDGGPKDVSSAELLSGKKVVICGVPGAFTPTCSDNHLPSFIQLADQFKAKGVDTVACMAVNDAFVMSRWIKSLEGEDKVTMLADGGAAFAEASGLVVKTGNFG-GPRLNRLAMIVNDGTIEKLFLEEGTGYSDKSSGDNVLAAL 706
            M I+ GD  PE    I+K  GP  VS+ EL  GKKVV+  VPGAFTPTCS +HLP F++ AD+ KAKGVDTVACMAVNDAFVM  W K    + KV MLADG   +  A  LV+    FG G R  R A+IVNDG +E+ F+EEG G    SS DNVLA L
Sbjct:    1 MSIQVGDTMPEGRLNIMKADGPGSVSAKELFDGKKVVLFSVPGAFTPTCSRDHLPGFVEKADEIKAKGVDTVACMAVNDAFVMDAWGKQAGADGKVLMLADGNGDYTRALDLVMDGTGFGLGMRGRRFALIVNDGKVEQAFIEEG-GQFKVSSADNVLAHL 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4788.11855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG20_ECTSI1.390e-9977.18Peroxyredoxin n=1 Tax=Ectocarpus siliculosus TaxID... [more]
B7ZGN1_9PHAE1.230e-8080.12Peroxyredoxin n=1 Tax=Laminaria digitata TaxID=803... [more]
A0A836CPD9_9STRA3.180e-6055.28Peroxyredoxin n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S2UXL6_9STRA7.560e-5854.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UXP0_9STRA1.940e-5658.79Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CG28_9STRA6.150e-4955.28Peroxyredoxin n=1 Tax=Tribonema minus TaxID=303371... [more]
UPI000366DB322.490e-4754.04peroxiredoxin n=1 Tax=Hyphomicrobium zavarzinii Ta... [more]
A0A5S9IM09_9BACT8.050e-4754.72Glutathione-dependent peroxiredoxin n=1 Tax=Candid... [more]
A0A3B9AG14_9GAMM2.400e-4655.28Glutathione-dependent peroxiredoxin n=1 Tax=Portic... [more]
A0A2E0LGK8_9GAMM4.670e-4656.52Glutathione-dependent peroxiredoxin n=1 Tax=Portic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4788contigH-paniculata_contig4788:7057..12398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.0
Seed ortholog evalue6.7e-81
Seed eggNOG ortholog2880.D8LG20
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.peroxiredoxin activity
EggNOG OGsCOG0678@1,KOG0541@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1741
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4788.11855.1prot_H-paniculata_contig4788.11855.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4788 8089..12307 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930418.756673-UTR-H-paniculata_contig4788:7056..80881622930418.756673-UTR-H-paniculata_contig4788:7056..8088Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4788 7057..8088 -
1691481283.3062243-UTR-H-paniculata_contig4788:7056..80881691481283.3062243-UTR-H-paniculata_contig4788:7056..8088Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4788 7057..8088 -
1622930418.874751-UTR-H-paniculata_contig4788:12307..123981622930418.874751-UTR-H-paniculata_contig4788:12307..12398Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4788 12308..12398 -
1691481283.3818023-UTR-H-paniculata_contig4788:12307..123981691481283.3818023-UTR-H-paniculata_contig4788:12307..12398Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4788 12308..12398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930418.7762403-CDS-H-paniculata_contig4788:8088..81811622930418.7762403-CDS-H-paniculata_contig4788:8088..8181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4788 8089..8181 -
1691481283.3198948-CDS-H-paniculata_contig4788:8088..81811691481283.3198948-CDS-H-paniculata_contig4788:8088..8181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4788 8089..8181 -
1622930418.7893126-CDS-H-paniculata_contig4788:8799..89941622930418.7893126-CDS-H-paniculata_contig4788:8799..8994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4788 8800..8994 -
1691481283.3303626-CDS-H-paniculata_contig4788:8799..89941691481283.3303626-CDS-H-paniculata_contig4788:8799..8994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4788 8800..8994 -
1622930418.8091147-CDS-H-paniculata_contig4788:9253..93791622930418.8091147-CDS-H-paniculata_contig4788:9253..9379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4788 9254..9379 -
1691481283.344469-CDS-H-paniculata_contig4788:9253..93791691481283.344469-CDS-H-paniculata_contig4788:9253..9379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4788 9254..9379 -
1622930418.8242056-CDS-H-paniculata_contig4788:9986..100651622930418.8242056-CDS-H-paniculata_contig4788:9986..10065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4788 9987..10065 -
1691481283.354655-CDS-H-paniculata_contig4788:9986..100651691481283.354655-CDS-H-paniculata_contig4788:9986..10065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4788 9987..10065 -
1622930418.848162-CDS-H-paniculata_contig4788:11749..117841622930418.848162-CDS-H-paniculata_contig4788:11749..11784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4788 11750..11784 -
1691481283.363633-CDS-H-paniculata_contig4788:11749..117841691481283.363633-CDS-H-paniculata_contig4788:11749..11784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4788 11750..11784 -
1622930418.8613362-CDS-H-paniculata_contig4788:12217..123071622930418.8613362-CDS-H-paniculata_contig4788:12217..12307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4788 12218..12307 -
1691481283.3726974-CDS-H-paniculata_contig4788:12217..123071691481283.3726974-CDS-H-paniculata_contig4788:12217..12307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4788 12218..12307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4788.11855.1

>prot_H-paniculata_contig4788.11855.1 ID=prot_H-paniculata_contig4788.11855.1|Name=mRNA_H-paniculata_contig4788.11855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
MKMASLARAVGGCMALNGVQGFIAPSTAGRTLGARSIHTTNSRLAMVIKE
GDKFPESSFQILKDGGPKDVSSAELLSGKKVVICGVPGAFTPTCSDNHLP
SFIQLADQFKAKGVDTVACMAVNDAFVMSRWIKSLEGEDKVTMLADGGAA
FAEASGLVVKTGNFGGPRLNRLAMIVNDGTIEKLFLEEGTGYSDKSSGDN
VLAAL*
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mRNA from alignment at H-paniculata_contig4788:7057..12398-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4788.11855.1 ID=mRNA_H-paniculata_contig4788.11855.1|Name=mRNA_H-paniculata_contig4788.11855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5342bp|location=Sequence derived from alignment at H-paniculata_contig4788:7057..12398- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCTGCTGGATTGTGCTCTGTGGCGTGGACTGGTCAATCCTCTTCTAAT
TTCTGCACCGGTGCGAGTCAAACTTTTCAACAAAAGCAAACATGAAGATG
GCATCGCTTGCTCGCGCAGTGGGGGGATGTATGGCTTTGAACGGGGTTCA
GGGATTTATTGCTCCCAGCACAGCAGGCAGGGTGAGCAACTTACCCAACC
CTCCTCCTAGCCCATTCGCACCTCCTACCTGTTCCCCTTCTTAGCCATCT
TGGGCAAAAACAAGACGGGTACTTTCGTGTTCCTGGGTCGTGCCGAAGGT
GTCCGTGGGTAAAGGGTTCATGCAATGACGTCTCGGTTCCATTTTCCTAG
ATTTCCCTTGCAGGTAGACGGCGTGACACGTGCAGTAACTCCGGACAGCA
CAGTCATAAGTACAGTCAGTACAGACAATGCAGTCACTACAACACTGATT
GTTCTTCACAGATTCATGTGAGCGTGAGACAAGGTACACCTCCTGTGGGT
TAGTTGTTGGGGGTTTCTGTTCCTGCACGTGGTTCGAAGTAGCTTGCATA
CCTTCACCTTCTCTTCGCCTTCTCTTCGCCTTCTTTTCCATGCCTTATCT
TGCGCGGTTGGCAGACTCTCGGAGCACGTTCGATCCACACAACAAACAGG
TACGTGAAGAGCGAGTTCACTACCTGTGTCGTGTGTTTTTTGTGAGCCGG
CGATGTACTGACTATTGATTGCTGTGTTACCCCTCCATAGAGTGAGTGTC
TTGTTGGTTTATTCATTGGATAGGGATTGTTTGCCGTTTCGTTATTTACA
GTGGCACCCGTACATGTGCGCCGATGTGAGAAACTGGAACTGTTATTGTG
AAGTAGGCAGTAGGGAAACCGAGGGGTTCGGGGTTGGATATACACGGGGT
ATCAGGCGAAAGATGCCATTCCAACATTTAAACAGCACCCTTCTCGCACA
ACTCCCAAACCGGCAACTTTAACTCGAAGGAGAAAAAATATCCCTCAACA
CACAGGTATTCCGTAGCAGGGTAGGTTATAAGAGTGTTGTACAGGTATTC
ACTCTTGAATGCGGTGAACGGATGTGTAGTGTGCAGGATGAGAGAGCGGA
GTCGACAACCTCGTCTGATGATGCCGTATGTTTGGTTGAATCATATGGAA
ACGCGAAGAACTATTAGGTGCCCAAGATATGTCTAGAGGTACGATCGTTG
TAATGTTTGTGTTCTTGTGCCGGGTATAATAACTCCCGGTATGGAACTCT
ACACGTTATGCGCAGTCGATCAAATTTACTGCAGCGTTGGAGTAATTCCG
TACATCATGTTCGGATCTGGCTGAAATACCGTGATCGACAGGAAGCATAT
AAGGCGAGGTATTGGTAGTGTATAGTGCTTGTTCATCGACTTGGGATGGG
AACAACTGTGCTGGCGGTAACGGTGATGCGCAGAGTCAAAGGGCTTGACG
TGGAGCTATTCAAGTCCCTTTTGTTCATTGGACTCCTGATTCAAATCAAC
CATGCTTAGTGTAACCATGCAGCGTAAGACAGGTCACGGTTTGAAAGTTT
AGAAGGCAAAAATAAATGGAAACAATTAGCAGTTTCATTGTGACCAGTCT
CGCATGCTTGGGGCAAGCAGGACTTGCTGGGTTCACCAAAAAGCGCAGAG
TGTGAGATCTCCCTATGTGAGAGCGAGTCGAGCACGGGGAAGGGTTCCTG
TTCGAGTGAACGGGCTTTCCATCTATCCACCCAACTTGACATTTTTTTTC
GCGGGCGTCCAGGAAAGGGCGAGGGTAGAGGTGTATACGACGTTTTTCTG
CTTTGTATTGCGACCGTTAGTGTGTCGTTTTCTCGGCGTTCCTGTGTTCA
CCGTCGAGAGTCGGGCAACGGTAGGGGGGGATTAGTTAGCCCAATTGTGT
ATCTTGCTCCCTTTGCGGATCGGCGAGGTGTAGCATTTGATCGTTCTTTC
GCTTATCCGCTGATTAGTTGAACAGTGCACGTCAAGATCCTCGTACTGTG
CATATTTTTTGCATGATGGGTGCGATGAACAGGTCATTTCGGTTCTAAAA
TTACGATGTCGTGAGTTTCCGTAAAGTAGCAACGTGTTCTTGTGATATGG
CCAGGTGCAAGGAGGAAGCAGTCTTCCCGTGGAATATACTCTGACTAGAT
TTTAAGGCTGAAAATGATGTTGTCACGCTATGGTGCTACGCCTAAACCAA
ATATGTGATCCTCTGGCAATTTTTCTCCCCATTCACCCTGGCGTGTGAGC
GACGGCCACCAGTTCCTAGACAACTGCACCTGCACCGCACACGAGATGCT
CATTGTGCTCCCATGTGCGCTCTCGTATTCAAGCAGATTGGCAATGGTGA
TCAAGGAGGGTGACAAGTTCCCGGAATCTTCGTTCCAGATCCTCAAGGAT
GGTGGACCGAAGGTACGTGCCTGTTATCATCTTGGTATTACAGGGTTGAG
CTTGATTTTGTAATTGCTTTCTAAAGGCGTCAACGCATACCAGTATTTTG
ATGCGCCCAATAAGGAAACTTTCCAATTTAAAGCTCTGAGAAACATGATT
CAACACTATCGGATGAGCACATCTCGCGGACCTACGCCCGAAAGGGCAGG
GTAGCTCCTGAATTGAGGGTGACTGGAAGTCTAGTTGGAGATTTTTTAGT
GGGTGCAACCCCCACACGGCTTACTCCGCAGAGAAATAAATAGCTGTTCT
GTTGAAGGAAATGTAAAAATAGTCGGGTATGGAAGCATCGGATGAAGGTT
TTGGCCTTGGCCTTCCTGGGGTTAACCCCCCCCCCGAGCATATCTATCCA
ATAACAGAATTCTATGGGACATTTACGGTATGGTGTTGCCAGCGGTCCAA
TGTTCCCTTGAAGCCATCTAACTCCGTGAAGACCAGGGGGCTTTCAATCT
GCATCGTGGCGAGTACCAGAGATAGGCTTACTCGTTGGGTAGGGGACTAT
ACTCGAAAAATGGTTCGGTGTGTCATCTTGACCACTTCTTTCCCCCCTTC
GCCCCTTCTGTCTCCACAGGATGTTTCTTCTGCTGAACTGCTCTCTGGTA
AGAAGGTGGTAATCTGCGGCGTTCCGGGTGCCTTCACGCCGACATGCAGC
GACAACCACCTCCCTTCGTTCATCCAGCTCGCCGACCAATTCAAGGTGAC
TGCTGTGATGTGCGCGTTGACGTTGCAAAGGTGGCGAGGCTGGTTTGAGG
GTGGTGGATGGTTGGTTATGGTTACAGTCCTGTTCGTCACTCTGTTTACT
ACACATTTCGTTCTTAAACCTCGTTTTCATGATGTACGTTCGAGTTGAAA
TTCCAGTGCTCGTTGGCCCACTAACCCCCGCTTCGTCGCCATCGCTATCT
TGACCCCATTCCACTCTTTTCTACAACTTCCCCGCCCTACGTATGCACCA
AAAGGCGAAGGGCGTCGACACGGTGGCGTGCATGGCTGTGAACGACGCCT
TCGTCATGAGCCGCTGGATCAAGTCGCTCGAGGGGGAGGATAAGGTCACC
ATGCTCGCGGACGGAGGTGCAGCGTTTGCCGAGGCCAGTGGGTTGGTTGT
CAAGACTGGAAACTTCGGCGGACCTCGGCTGAACCGACTGGCCATGATCG
TGAGTCTTGGCCCGTCGTTTGTTTTCGATCATTTGTTTGTAATTGGCTCA
TGTGTTGGGGATTTGGCTCCTTATCAATTCTTCCTCGAGAGTAACACGGT
ACTGGCAGATGGGATCTGCACGATATACAGTAACTGAAGCGGAACACTGC
CACGGTTGAATGCTATGGTGTTTTCCGTAAAGCAGAAACAATTGTAGTAC
CCTACGTTCACCTCGTCAGGTCTAATACCGACCGCTCGCATTATGTGGCA
GACTTCCTTTTATGTGTACTGTTCGTTTCTGCTGTTGAACAATCCATGAA
TATCCGATGAGCGTTTGTGCGTATATTCATTTTTTGACGTTCTGAAGCAG
ATCCACGCTGTAGCAAGGTGCGGCTTTTAAAGGGCGCTCTTGTCCGTGCC
CAGGATTCACAAGAAATTACTACCACCACTAGCACGATTGTTGTCGGTCA
TCTAGTAATAACTAATCGAGAAGGTTATATGGCTTAATAAATGATTCGGG
TTGCATGACCGTGGCATGACTACAAGATGGAAAAATGTACTGCGCTGTAT
CCGTCCCTGCCCGCGCGTCGTTTCTGATTTGTCCCTGAACTCATCGTGCG
ATTTCTCCCTGGTGTAGGTGAACGATGGTACCATCGAGAAGTTGTTCTTG
GAGGAAGGCACCGGTTACTCCGACAAGTCCTCGGGTGACAACGTGCTTGC
TGCTCTATAAGGCTGCTCTATAAGGCAACCCCAGAGTTACCGTCACGTCC
ATGCTAGCTTTACCAGCAACCACGCCCTAATCGTCATCTAGTTCTTCGTA
CGGGATGTCGGGTTCATTGTGAATGAAAGGACGACCTTCCGCACTACGCT
GATGGTTGATTATTTAGCGTTCTTCGTGATGCTTTACGCCCATGATAATC
ATGAAGATTATGATGCGGTGTTGGTCTCACGTGCTGCAGATGTGGCTTCT
AGTCGAGTAGATAGTGCGCCAATGGACGTCAACATGGGCGGACTAGTTTG
TGTCGAGTGTCGTCGCTTGAGTGTTGTAACGGACCCCCGCGCGCAGCTGA
GTCCCAGACAGTTCGTGCTGGGTGTTCCGTGTGCAAGTGTAGCAGTGTAG
GTATTGCGAAAGAAAAGGCTGCGGTCGACAGTTTTCTAGGGTGCGGATGA
CAGTTGGCACGATGTCGTAGTAACCAACTCCTTGTCAGTAAGATTTCTTG
TCCCTTGAGCAACCGGATTTCGTAACGGCCAAGAGCTGAATGGGCCCACA
ATCAGTCGTGAACGACGGCGAATAGCCAACAGAAAGTGTTGAACCACCTC
TCACCAACGGACATATGTCGGAACGGGTAGGGTAACTCGTGAACTGAGCA
TGACTGGAAGTCTAGTCGGACGTCTTTCAGTGGGTGCAACGCTCACACTG
CCCGGTACCCGGTTCGGCCGAACCGGGGTGGCGCCTGTCCCGAAGAGGAT
TAAATAACTGAGTTCTGTTAAAAGAAATGTGGAAATACTTTGATAAAATA
CTGTAGTATGGAAGCATCGGTAAAGGTTTTTGCCTTGGCCTTACGAGGGT
TAACCCCCCCATCCCCCCGAGGGTTAAAAGAAAAAAACCCACCTCTTACC
TGTAAGTGTCATTTTCGCTTGTCGCTCGAAGGAATATTTACATTAAAATC
TGTCCTAAGCGAGAACGGACAAAGTTTTTGGACAGGAATAATATATTGTG
TTGCCAGCTCGATGAGGCTAGTGATTTGCGGGAAAGAGTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig4788:7057..12398-

>mRNA_H-paniculata_contig4788.11855.1 ID=mRNA_H-paniculata_contig4788.11855.1|Name=mRNA_H-paniculata_contig4788.11855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig4788:7057..12398- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGATGGCATCGCTTGCTCGCGCAGTGGGGGGATGTATGGCTTTGAA
CGGGGTTCAGGGATTTATTGCTCCCAGCACAGCAGGCAGGATGAAGATGG
CATCGCTTGCTCGCGCAGTGGGGGGATGTATGGCTTTGAACGGGGTTCAG
GGATTTATTGCTCCCAGCACAGCAGGCAGGACTCTCGGAGCACGTTCGAT
CCACACAACAAACAGACTCTCGGAGCACGTTCGATCCACACAACAAACAG
CAGATTGGCAATGGTGATCAAGGAGGGTGACAAGTTCCCGGAATCTTCGT
TCCAGATCCTCAAGGATGGTGGACCGAAGCAGATTGGCAATGGTGATCAA
GGAGGGTGACAAGTTCCCGGAATCTTCGTTCCAGATCCTCAAGGATGGTG
GACCGAAGGATGTTTCTTCTGCTGAACTGCTCTCTGGTAAGAAGGTGGTA
ATCTGCGGCGTTCCGGGTGCCTTCACGCCGACATGCAGCGACAACCACCT
CCCTTCGTTCATCCAGCTCGCCGACCAATTCAAGGATGTTTCTTCTGCTG
AACTGCTCTCTGGTAAGAAGGTGGTAATCTGCGGCGTTCCGGGTGCCTTC
ACGCCGACATGCAGCGACAACCACCTCCCTTCGTTCATCCAGCTCGCCGA
CCAATTCAAGGCGAAGGGCGTCGACACGGTGGCGTGCATGGCTGTGAACG
ACGCCTTCGTCATGAGCCGCTGGATCAAGTCGCTCGAGGGGGAGGATAAG
GTCACCATGCTCGCGGACGGAGGTGCAGCGTTTGCCGAGGCCAGTGGGTT
GGTTGTCAAGACTGGAAACTTCGGCGGACCTCGGCTGAACCGACTGGCCA
TGATCGCGAAGGGCGTCGACACGGTGGCGTGCATGGCTGTGAACGACGCC
TTCGTCATGAGCCGCTGGATCAAGTCGCTCGAGGGGGAGGATAAGGTCAC
CATGCTCGCGGACGGAGGTGCAGCGTTTGCCGAGGCCAGTGGGTTGGTTG
TCAAGACTGGAAACTTCGGCGGACCTCGGCTGAACCGACTGGCCATGATC
GTGAACGATGGTACCATCGAGAAGTTGTTCTTGGAGGAAGGCACCGGTTA
CTCCGACAAGTCCTCGGGTGACAACGTGCTTGCTGCTCTATAAGTGAACG
ATGGTACCATCGAGAAGTTGTTCTTGGAGGAAGGCACCGGTTACTCCGAC
AAGTCCTCGGGTGACAACGTGCTTGCTGCTCTATAA
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