mRNA_H-paniculata_contig4785.11851.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4785.11851.1
Unique NamemRNA_H-paniculata_contig4785.11851.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4785.11851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4785contigH-paniculata_contig4785:6637..10183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1397
Cds size702
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4785.11851.1prot_H-paniculata_contig4785.11851.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4785 7319..10170 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930418.316614-UTR-H-paniculata_contig4785:6636..73181622930418.316614-UTR-H-paniculata_contig4785:6636..7318Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4785 6637..7318 -
1691481283.1003835-UTR-H-paniculata_contig4785:6636..73181691481283.1003835-UTR-H-paniculata_contig4785:6636..7318Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4785 6637..7318 -
1622930418.3902042-UTR-H-paniculata_contig4785:10170..101831622930418.3902042-UTR-H-paniculata_contig4785:10170..10183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4785 10171..10183 -
1691481283.138496-UTR-H-paniculata_contig4785:10170..101831691481283.138496-UTR-H-paniculata_contig4785:10170..10183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4785 10171..10183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930418.3321583-CDS-H-paniculata_contig4785:7318..76151622930418.3321583-CDS-H-paniculata_contig4785:7318..7615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4785 7319..7615 -
1691481283.1106756-CDS-H-paniculata_contig4785:7318..76151691481283.1106756-CDS-H-paniculata_contig4785:7318..7615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4785 7319..7615 -
1622930418.3509252-CDS-H-paniculata_contig4785:9316..95001622930418.3509252-CDS-H-paniculata_contig4785:9316..9500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4785 9317..9500 -
1691481283.121237-CDS-H-paniculata_contig4785:9316..95001691481283.121237-CDS-H-paniculata_contig4785:9316..9500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4785 9317..9500 -
1622930418.3727329-CDS-H-paniculata_contig4785:9949..101701622930418.3727329-CDS-H-paniculata_contig4785:9949..10170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4785 9950..10170 -
1691481283.131053-CDS-H-paniculata_contig4785:9949..101701691481283.131053-CDS-H-paniculata_contig4785:9949..10170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4785 9950..10170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4785.11851.1

>prot_H-paniculata_contig4785.11851.1 ID=prot_H-paniculata_contig4785.11851.1|Name=mRNA_H-paniculata_contig4785.11851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
MTYEGDEPNTHGQNQQTGDPPKIMTGESLFRLSHGAFFAKRRAVMQEMFD
KYPPGQFPDHMITAGERAGMLATKIELGAGGTIGGLSVYLAGRYLNARRG
LRGTPRGTIFASAAAMIAGAALFTLTDVGSFFHDEDVKGGPLNLERDCPA
YLMLENCAKRQDCVDAAQKLGDKFRLLEGYNACVNRAVEENSGAFPSGSA
GFPTGSAGFPTGSAGFPTGSAGFPTGNARFPKT*
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mRNA from alignment at H-paniculata_contig4785:6637..10183-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4785.11851.1 ID=mRNA_H-paniculata_contig4785.11851.1|Name=mRNA_H-paniculata_contig4785.11851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3547bp|location=Sequence derived from alignment at H-paniculata_contig4785:6637..10183- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTCAAGAGGAATGACATATGAAGGCGATGAACCGAACACCCATGGGC
AAAACCAACAAACGGGTGACCCACCAAAAATCATGACTGGAGAATCATTA
TTTCGTCTTTCCCATGGCGCGTTCTTCGCGAAGAGGCGTGCGGTCATGCA
GGAGATGTTCGACAAGTATCCTCCAGGGCAATTCCCCGACCACATGATCA
CGGCAGGGGAGAGAGCGGGAATGCTTGCGACCAAGTGAGTTGGGTTGAAT
TAGTGCTGTATATCACCAGGCAATGTTATAGGCGAGGGTATTCGAAAATC
ATGGAGCGCAGTCAAGCACTCCTGTGGGAATATTATCAATATGATACACG
AGAATGAGATATGTAGAGTGGGGGTCCCATTTGAATGCGGTGGTATGGTA
CCCGAATTTGACCACACTAAAGTGCAATCCCCCACGATGCCCAGTTTAGC
CCAGTTTAGTACAGTACCGCAGTCAAAAGGCTCCATACTAGGGTAGTATC
GCGCTGAAAAAAACTACCCTGAAGACTACGATACCGCACTTACATGGTCG
ATGAATCGTCGTTACCTCAAGCCAGAAAACATCTTTGCAATTTGAGCAGA
AACCAAGAGCCCTTTCTCGCCTAGTGTCCCTAGTCTTGACCCATACATTT
TGCACATCATCGTACAACTGCTTTTGTTCCCAGGATAGAGCTTGGAGCAG
GAGGCACTATCGGCGGCCTCTCCGTGTACCTTGCTGGTCGGTATCTCAAC
GCACGTCGAGGACTCCGGGGAACACCGCGTGGAACTATCTTTGCAAGCGC
CGCCGCGATGATCGCTGGGGCGGCTCTGTTTACACTTACAGACGTGGGAT
CCTTCTTCCACGATGAGGTACAGCAAGCCGGTGCTCAACGGCGTGGAATT
TGAAAGAATCCCCCCCGAAAACTCGACGAAGTTTTCGAGGTGTTGTTGTC
ATAGTTGTTACATGCAATTTTCTTGATTATGAACCCAACCTCTTGGCAGT
TAATAACCAACATATTTGCTGGGTATCAGCACCAATTTGCACTCTTCCTG
GGACGCGCACCTCTGCCACCGTGCAATAAACGCCTTCTCTCTTCAACACG
TCCAGGACAAGGTACTTTTCGAAACATCGTTGAAGACTTATATCCGATTC
GTGTTGAAAATCGGCCGTTTTTCGCGCGTTCCGAAGGAGTGTGCCCAAAA
GTAGATCTATGTAGGTAAACACAGACCTGCTATGGGTGCGTCCCAGGGTC
TGATATAAACAATATATGTTTTATATTATATTAAAATCAAATATCCTAAA
CACAAATATCAGAAAGCAAATTTCAGAGGGCTGTGTCCCGAAGGGCTCAA
GGAGCGCAGCCGAAAAATGTACTTTTTTTATGTTTTCTAATCATGAACAG
AAGAGGCGCAAATATATCGATAGGTCCAAGAAACCTCCGGTGTAAGCTCG
AATGATACCTGGTTCGAGTCGCTAATTTTCAGATCTACGGACTTTACAAA
AATCAAACCCAAATCTAAAGGCAATTTTGACATCTAGTCAATATCCACTG
CATATCCACTGCAGATTTTCCCTAGTTGTTCTCGACGAAAATGCTCGTGT
TTTACAGCCGTCCAACTGCACGATAACAGTGTACGACTGCCGACGGAGTC
AAGGACGAAACGCAGCACAAGACGATTCATAAGCCGTTATGAAGATAATC
CGGAAACCACCGAGTGGGGACTTTCCACACCTATCGAAGCGAAAAAGTCC
AATTTTTCACCAATTTTTCAGGGTAGATTAGTGTCTTCAATATATTTCTT
CAGCCCATCTTCAACGAAAAAATGGAGCAATGCACAATGTTTTTCGTCTT
ACAAGTCGTCTCCCTGTAATCTCCCGCTCTTGTTGAGAATGAAACGCCAC
GCACGTTCGCGACGTTTCCCGATATTGTTGATATTATTCAGCATGGGTCT
CGAGTGCGTCTGGGCATGATGGTAACTTTGTCAACCTTGTAGAGTTTGGG
GTAGAGTGAAGGGTAGGATGCAGTTGTCACCGAGCACCGTTACTGGGCGC
GACCAAGTTAGTGATGTGGGCTCATCGTTTTCCGCTGGTGTCATATCTTG
CCGACGGGAAGGTGTGCAAAAGATTTAAGCGTTTCGGTCCCTCTTACGTG
CAAACGGACAGGACATCCCGGCAACCTCTGCGAAAGAACAACCCTTGAGA
ATATATTTGGACGCGATTTTCCATATGATCCTTTGGTGCCTGGAGAGGAA
CCAGCATGCCCAATAAGTGTTAGAATCAGCCCTGACTGGCTGTACCGTCA
ACTCTACTCTATAGTCTATGCGATATACTTGTTCATCTTCACAACCTCTT
GTATCTGTTTCAAGTATCTCACTATCCCCTTTTCCCAATGCACCAAACCT
CACTGTATTTGCGTTTATTGTCGCGTGATACTTCCCCCCAAGTACCTGTA
TTCAGAGAGGACTTGACTGGGTTAACTCGCGGCATCACGTTCAAAGCAAA
TCTCATCCTTGCCGACGCCGCGTGTGCCTCTACCGCTCTCTGTCCCTGTG
CCGCGTGAAAATTCCCAGGACGTCAAAGGGGGGCCGCTGAACCTGGAGAG
GGATTGCCCGGCATACCTCATGCTCGAAAATTGTGCAAAACGTCAAGATT
GTGTAGATGCCGCCCAAAAGCTCGGCGACAAGTTTCGATTACTCGAGGGG
TACAATGCATGTGTCAACCGTGCGGTTGAGGAGAATTCTGGCGCATTTCC
TTCTGGAAGTGCCGGTTTCCCAACTGGAAGTGCCGGTTTCCCAACTGGAA
GTGCCGGTTTCCCAACTGGAAGTGCCGGTTTTCCCACTGGAAATGCAAGA
TTCCCGAAAACGTGAACAAGCTTGGCGATGACATGTGGGCATCTCCCCGG
GATTGCATCATGTGGCTTGTGGTTGGATTGGTTGTCGCGTCATGCAGTTC
CAGTGTCGAGTAGGCAATAATCTGGCAAAGCAGGTTATTGGTCAATACCA
TTTCTTGGTGATTATCCTTGTTTTGTTTTCCTTGTCTGGCGAATGACAGG
AGCTGTTTGAGACCGCATGCCGTAACGACTGCCTCCATTAAGGTGTTTAT
TTTGTTTTTTCGGCCGGCCGAGTTATGTCCACATGCCAGATCTTGTCGAC
TGGGTTGATCCTGGATACCCCCGCCCTGCCAAGCAAGGCAAGGAGGGAAT
GAATCCTGCTTGTCTTAGCAAATATCATATTTGGTGTGTGCGCTAGCAGT
GGAGACGGCCTGTGTTGGTCCCCACGACGCACTCGTACGTCGCAGCTCTT
TTCTACAGTGTCATAGACACATATGTTGCTGGAGTTCTCACGGGTGTATT
ATTAAACGGAACGGGTGAAAGGTGTGTTACCATAAATGCAGCGCACTAGG
TTGATCTCAGTCATCCATATGTAAATTTCCTGTTTACCCCAATCCTCCAC
ACGCAATCCGTCTCGTTGCAACGCGCGATTTTGTGCCTTCGCTGGTTCGC
CGCTGCGGTTGTGCGGGCGTCAAGGGGTGGGATATGGTATTGCAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig4785:6637..10183-

>mRNA_H-paniculata_contig4785.11851.1 ID=mRNA_H-paniculata_contig4785.11851.1|Name=mRNA_H-paniculata_contig4785.11851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig4785:6637..10183- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACATATGAAGGCGATGAACCGAACACCCATGGGCAAAACCAACAAAC
GGGTGACCCACCAAAAATCATGACTGGAGAATCATTATTTCGTCTTTCCC
ATGGCGCGTTCTTCGCGAAGAGGCGTGCGGTCATGCAGGAGATGTTCGAC
AAGTATCCTCCAGGGCAATTCCCCGACCACATGATCACGGCAGGGGAGAG
AGCGGGAATGCTTGCGACCAAATGACATATGAAGGCGATGAACCGAACAC
CCATGGGCAAAACCAACAAACGGGTGACCCACCAAAAATCATGACTGGAG
AATCATTATTTCGTCTTTCCCATGGCGCGTTCTTCGCGAAGAGGCGTGCG
GTCATGCAGGAGATGTTCGACAAGTATCCTCCAGGGCAATTCCCCGACCA
CATGATCACGGCAGGGGAGAGAGCGGGAATGCTTGCGACCAAGATAGAGC
TTGGAGCAGGAGGCACTATCGGCGGCCTCTCCGTGTACCTTGCTGGTCGG
TATCTCAACGCACGTCGAGGACTCCGGGGAACACCGCGTGGAACTATCTT
TGCAAGCGCCGCCGCGATGATCGCTGGGGCGGCTCTGTTTACACTTACAG
ACGTGGGATCCTTCTTCCACGATGAGGATAGAGCTTGGAGCAGGAGGCAC
TATCGGCGGCCTCTCCGTGTACCTTGCTGGTCGGTATCTCAACGCACGTC
GAGGACTCCGGGGAACACCGCGTGGAACTATCTTTGCAAGCGCCGCCGCG
ATGATCGCTGGGGCGGCTCTGTTTACACTTACAGACGTGGGATCCTTCTT
CCACGATGAGGACGTCAAAGGGGGGCCGCTGAACCTGGAGAGGGATTGCC
CGGCATACCTCATGCTCGAAAATTGTGCAAAACGTCAAGATTGTGTAGAT
GCCGCCCAAAAGCTCGGCGACAAGTTTCGATTACTCGAGGGGTACAATGC
ATGTGTCAACCGTGCGGTTGAGGAGAATTCTGGCGCATTTCCTTCTGGAA
GTGCCGGTTTCCCAACTGGAAGTGCCGGTTTCCCAACTGGAAGTGCCGGT
TTCCCAACTGGAAGTGCCGGTTTTCCCACTGGAAATGCAAGATTCCCGAA
AACGTGAGACGTCAAAGGGGGGCCGCTGAACCTGGAGAGGGATTGCCCGG
CATACCTCATGCTCGAAAATTGTGCAAAACGTCAAGATTGTGTAGATGCC
GCCCAAAAGCTCGGCGACAAGTTTCGATTACTCGAGGGGTACAATGCATG
TGTCAACCGTGCGGTTGAGGAGAATTCTGGCGCATTTCCTTCTGGAAGTG
CCGGTTTCCCAACTGGAAGTGCCGGTTTCCCAACTGGAAGTGCCGGTTTC
CCAACTGGAAGTGCCGGTTTTCCCACTGGAAATGCAAGATTCCCGAAAAC
GTGA
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